Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_10171
- Subject:
- XR_001744731.2
- Aligned Length:
- 3349
- Identities:
- 390
- Gaps:
- 2950
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTTTTTTTCCGAACGCCCGCAGCAGGGTCAGAAGGGAGGTGGTCGCCCTCCGTCGTGGTCTGGCGTGTATTCCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGCCTTGGTGTCTGGCGGTTTCCGAGCGTTGGTGTCTGGCGGTTTCCGAGCGTTGGTGTCTTGGCGGTTTCCGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCGTTGGTGTCTGGCGGTTTCCGACCGTTGGTGTCTGGCACGCGCCACCCTCTCTTGCTTTGGTTGCGCCATGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGATGTACCAGACAAGAAGACAAGAAAATGATTTGAGGACAGCTTCAATCGCGGTGTGAAGAAGAAAGCAGCAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AACGACCACTGAAAACAACGCCGGTGGCAAAATATCCAAAGAAAGGGTCCCAAGCGGTACATCGTCATAGCCGG 370
Query 1 ----------------------ATGATCTTTTCAATGCTGCGAAAGCTGCCAAAAGTGACATGCAGGGATGTCC 52
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AAACAGTCAGAGCCACCAGCCAATGATCTTTTCAATGCTGCGAAAGCTGCCAAAAGTGACATGCAGGGATGTCC 444
Query 53 TTCCTGAGATCCGTGCTATCTGCATTGAGGAAATTGGGTGTTGGATGCAAAGCTACAGCACGTCTTTCCTCACC 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TTCCTGAGATCCGTGCTATCTGCATTGAGGAAATTGGGTGTTGGATGCAAAGCTACAGCACGTCTTTCCTCACC 518
Query 127 GACAGCTATTTAAAATATATTGGTTGGACTCTGCATGATAAGCACCGAGAAGTCCGCGTGAAGTGCGTGAAGGC 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GACAGCTATTTAAAATATATTGGTTGGACTCTGCATGATAAGCACCGAGAAGTCCGCGTGAAGTGCGTGAAGGC 592
Query 201 TCTGAAAGGGCTGTACGGTAACCGGGACCTGACCGCACGCCTGGAGCTCTTCACTGGCCGCTTCAAGGACTGGA 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TCTGAAAGGGCTGTACGGTAACCGGGACCTGACCGCACGCCTGGAGCTCTTCACTGGCCGCTTCAAGGACTGGA 666
Query 275 TGGTTTCCATGATCATGGACAGAGAGTACAGTGTGGCAGTGGAGGCCGTCAGATTACTGATACTTATCCT---- 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TGGTTTCCATGATCATGGACAGAGAGTACAGTGTGGCAGTGGAGGCCGTCAGATTACTGATACTTATCCTTAAA 740
Query 345 ----------------------TAAGAAC-----ATGGAAG------------------GGGTG--CTGATGGA 371
||||||| .|||||| .|||| |.|| |||
Sbjct 741 CTTTTCTACCCTGAGTGCGAGATAAGAACGATGGGTGGAAGAGAGCAACGCCAGAGCCCAGGTGCCCAGA-GGA 813
Query 372 C-------------GTGGACTGT-----------GAGAGC------------GTCTACCCCATTGTG------- 402
| .|| |||| |||||| ||||.|.|||...||
Sbjct 814 CTTTCTTCCAGCTTCTG--CTGTCCTTCTTTGTGGAGAGCAAGCAAATCGCAGTCTTCTCCAGGCTGACAAGGC 885
Query 403 -------------------------------------------------------------------------- 402
Sbjct 886 GAAGGGCATGGCTTCGAAGTGCAAAAGAGTCATCATGAAACATCATGAATCATGAATCATTAGGCGTCTTCCCT 959
Query 403 -------------------------------------------------------------------------- 402
Sbjct 960 TCGCTCCCCACTTTTTTTTTTTTTTTTTTGAGACTGAGTCTCGCTCTGTTGCCCAGGCTGGAGTACAGTGGTGC 1033
Query 403 -------------------------------------------------------------------------- 402
Sbjct 1034 GATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCGTAGCCTCCTGAGTAGCTGGGA 1107
Query 403 -------------------------------------------------------------------------- 402
Sbjct 1108 TTACAGGTCCCCGCCACCACACCTGGCTAATTTTCTTATTTATTTATTTATTTTTAGTAGAGATGGGGTTTTGC 1181
Query 403 -------------------------------------------------------------------------- 402
Sbjct 1182 CATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCACCTGCTTTGGCCTCCCAAAGTGCTGGGAT 1255
Query 403 -------------------------------------------------------------------------- 402
Sbjct 1256 TACAGGCGTAAGCCATTGCACCCAACTCACTCCCCACCTTAAAACCAAAAGCGCTCTGGCTCTCAATGGAGACA 1329
Query 403 -------------------------------------------------------------------------- 402
Sbjct 1330 TCAAGCCCTCCCTGCCCCTTCTCCCTCCCCTTTCAGAGAATCTCCAGGAATTTCTGCCATTGTGCAGGGAGCAA 1403
Query 403 -------------------------------------------------------------------------- 402
Sbjct 1404 TTGAAAAATCAGTTAGTTCAGCTGGGTGCAGTGGCTCATGTCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGG 1477
Query 403 -------------------------------------------------------------------------- 402
Sbjct 1478 GCAGATCACCTGAGGCCAGGAGTTGGAGACCAGCCTGGCCAGCACAGTGAAACCCCGTCTCTACTAAAAATACA 1551
Query 403 -------------------------------------------------------------------------- 402
Sbjct 1552 AAAAATTAGCCGGGCGTGGTGATGGGCACCTGTAATCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATGGCGTG 1625
Query 403 -------------------------------------------------------------------------- 402
Sbjct 1626 AACCTGGGAGGTGGAGCTTGCAGTGAGCCGAGACTGCAGCATTGCACTCCAGCCTGCGCAACAAGAGTGAAACT 1699
Query 403 -------------------------------------------------------------------------- 402
Sbjct 1700 GTCTCAAAAAACAAAACAAAACAAAACACAAAAAGAAAGAAAAAAGGAAAAATCAGTTAGTTCGATTATTAGAA 1773
Query 403 -------------------------------------------------------------------------- 402
Sbjct 1774 GACTAGATTATTGCTCAGCAGTAACCACTCCTTTCCCACAAACTCCCCTCTCTAGGAGGAATGTACCTCCCCAC 1847
Query 403 -------------------------------------------------------------------------- 402
Sbjct 1848 CCATTCCTGTTAGGCTTGGCCAGGTGAATCGCTTTGGCCAATAGAATGTAACTGACAAGGTGAGCAGAGATTTG 1921
Query 403 -------------------------------------------------------------------------- 402
Sbjct 1922 CAGTGGGCTTGTGCTTGGTGCTGGTCCTCCGGGGCTCCTGCCTTTAGCCAGGGGAAGCACACTCCCCAGCCCCT 1995
Query 403 -------------------------------------------------------------------------- 402
Sbjct 1996 CCTTAGCCCTCTGGCCCTGGGGAGAATGAGAGGCATGTGGCACAGTCCTGGACCCAGCCGTGGCTGGGAGCAAG 2069
Query 403 -------------------------------------------------------------------------- 402
Sbjct 2070 CCTGGAAGCTTGAGCGAGAGATAAATGCTTGGTCTTTTTGTTTGAGACTAAGTCTCGCTCTATCGCCCAGGCTG 2143
Query 403 -------------------------------------------------------------------------- 402
Sbjct 2144 GAGTGCAGTGTGGCACAATCTCAGCTCATTGCAACCTCCACCTCCCAGGTTCAAGCTATTCTCCTGCTTCAGCC 2217
Query 403 -------------------------------------------------------------------------- 402
Sbjct 2218 TCCCAAGTAGCTGGGACTACAGCCAAATTGGAAGACCCACTTCTCTGGACTGGATGCTGCATTGAATTGAGCAA 2291
Query 403 -------------------------------------------------------------------------- 402
Sbjct 2292 AGGAACTGAGTGCCCGGGGAGCTCAAAGGGAAGCAGCCCAGCCTTCCTTCCGGGGCAGAGCAGTGGTGGGGACC 2365
Query 403 -------------------------------------------------------------------------- 402
Sbjct 2366 TGTTTCCAGCTGCTTGTGCCCCCCACTTCATGGAGGAGGGACCAGGGATCCTCAGAGGAGAGGAATCGGCTCCC 2439
Query 403 -------------------------------------------------------------------------- 402
Sbjct 2440 AGACACCTGCCACTCGTGAATGCATCTGATAAACTCACTCACACTGAGGCCTTGGGGACTGAGAGTGCGATGAC 2513
Query 403 -------------------------------------------------------------------------- 402
Sbjct 2514 ATGGATCCTGCGGACAAACCGCCCCAGGGCGTACCTAGCACCGAAGCATCAGGCGCCACTAGGTCTCCAGCTCC 2587
Query 403 -------------------------------------------------------------------------- 402
Sbjct 2588 TTCTCGGATGACGTCCTTCAGCACGCCCCGGTCCCCCGAGATGTCCAGCATCCTCTGACTTAACCGCTCGTACA 2661
Query 403 -------------------------------------------------------------------------- 402
Sbjct 2662 GGGACTGATGGAGAATGAAAGCCAGGCCTCAGAGCCGCAGACCCACCCGGCCACCCCTCAGCGTCTACGCCCCC 2735
Query 403 -------------------------------------------------------------------------- 402
Sbjct 2736 ACGTCTGGGCCCTCACCTGGCCGGGGGCGTCGTCCCCTTCCAGGACTCCCTGGTTTAACGCGCTTCCCCCCATG 2809
Query 403 -------------------------------------------------------------------------- 402
Sbjct 2810 TCCTAGCTGCCCTCCCTGTGGCGTGAGCCTTCGGCCTGGTGCGCCCCGCTGCCCTTCCTGGCTGTGACTCTGGT 2883
Query 403 -------------------------------------------------------------------------- 402
Sbjct 2884 GGGGTTCCGAAGGCCCCTTTATGCCCGGCAGACCCCTACCGACGGCGGCATTCCATTCTGGGGCCACGAGGAGG 2957
Query 403 -------------------------------------------------------------------------- 402
Sbjct 2958 CACTCATCGTTTCGTTCCAACCGCCGCCAACGGCCCTGGCCCTCGCGAGCTCTGGAACTACAGAGGTCGCACGG 3031
Query 403 -------------------------------------------------------------------------- 402
Sbjct 3032 TGAGTTGCCAGGTGTGGCCCGTAATCGGAGCGCACAAAACATGATGGGACACGTAACGGGACCACACAGGGCAC 3105
Query 403 -------------------------------------------------------------------------- 402
Sbjct 3106 ATTGGGCACTTGCAGGGGCGCGAGGTGGCGGCACGTAATGGGAGCGCGCTGAGCATGATGGGGCATGTGCGGGA 3179
Query 403 -------------------------------------------------------------------------- 402
Sbjct 3180 GCGCCAGGCGGGGCATGTAACCAGAGCGTGCGGGGCATGATGGGGCACGGACATGGGGGGTTAGGTGGGGCACG 3253
Query 403 -------------------------------------------------------------------------- 402
Sbjct 3254 TAATTGGAGCTCGCGGGGCAGGATGGGGCATCTAACTGGAGCGACAGAGAGCACGATGGGGCACTTACAGGGGC 3327
Query 403 ------------------- 402
Sbjct 3328 CGGAGGCTGGGTACGTAAT 3346
