Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_10261
Subject:
NR_001575.1
Aligned Length:
5701
Identities:
64
Gaps:
5629

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTGTGCGGCTGTCCCGGGAGGGCTTTAGCGCAGAGCCGCGACGGGCAGCGGGGGTGTGTTGCCTGACGCGTGCG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CAGCTGTGGGGCGACACACGGGGGCGGCTTCTGCAGCCGAGGGACCCCGCTTTGCAGCCTGCACCCCGGCTCCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCGTGCCCGCCGCTGTCTGTCGCCCGCCGGTGCGATGAGCCCAGCCCTGCTTGGACGCTGTTCACGCCTCTGCG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CTCCATACCTTGCTCCTGTCCTCTGTTTGCAGTTCCACTCTAGCAGAGCAGGGTGGGCTCCTCCCCTCTGTACG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GTAGAGGAGCCTGGTCACTGGCCCATCTCAGTAGTGAAACTGGAGGTTTGATGCACAGGGGATTCTCAGTAGCA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GGCGCCAGTGCCTGATTTATCGTGAGAAGCAGTTTAATATTTCGGCTATAAAAGGCTAGAACTAGTTCCTAATT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AGAAGGTGTGCCAGGTTGTAAATTGTCAGGTTGCAAGTAGGGATGAGCACGCCAAGTTTTTGCGTATAGGTCTA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  AAGAAGTTTTGGGGGTGGGGGAGGATGCGGTACCCCAGACCTGTTTCCTTGTCTGCCCAGACCTTGCCATGGTG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TAGCTTTCCATCTCTTGTGACAGTGTCTCAAGGAGCAGTAGACATTCTTTGGCTGCAGCAGATTTCGCATTGTC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TTCCTGATTGGAAGAGTTCAGTTATGAGGCTTCTGGTTGCCAGTTACTCCTTTCTTTTGAAGAGAAAGAACTGG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AATCATTTGGATAAGGGATGGGCGTTGGAAGGAGTAGTTTTCACTTTTTATGTATTGTATAAGGCAGTTATGCT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GTGAACTATTTATATATGATGGAATAAACAAAAACAAAGCAAGAGCTGCTGGAGGTTTGGATAGTCCTACTCAT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GTTGAAGTAATCAGAATAGTAGTAGTATTGGCAAGTTCTCAGGGTGGGAGATCTGTGGCTTTAGCCACCTGGAT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GGAAGTCTGCGTAATGGTTTCTCAGTGACAGGAGATTCCCTCGGTTTTAATCCAGTAGTTCCTAGTTATTCCAC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TCTCCAGTTTCCAACCGGGTCATTTAGGCCCTTGCAATCTTGTGGAATTCTTATAAATTCTGTTACCAGGTTTT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GTTGTTGTTGTAAGGAAAAATTCCATTTTGTTATCTTTTTTTTTTTTTTTTGGATACAGTCTCTCTCTGTCACC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  CAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAGCCTCTGCCGCCTGGGTCCAAGTGATTATCCTGTCT  1258

Query    1  ----------------------------------------------------------------------ATGG  4
                                                                                  |..|
Sbjct 1259  TGGCCTCTCTAGTAGCTGGGATTACAGGCACCGCCACCATGCCTGGCTAATTTTTCTGTTTTTAGTAGAGACAG  1332

Query    5  GGTTTCTCCATGTCGGTCAGGCTGGTCTGGAACTCCTGACCTCAGGTGATCCGCCCACCTCAGCCTCC------  72
            |||||||||||||.||.|||||||||||.||||||||||||||||||||||||||...||||||||||      
Sbjct 1333  GGTTTCTCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCTGTCTCAGCCTCCCAAAGT  1406

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1407  GTTGGGATTACAGGTGTGAGCCACAGCGCTGGGCCCTAAAACTGCATTTTGTTACCTGTTAATATGAAGCATCT  1480

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1481  TTGTTGTTTCCCAAGACACTTCCTGTTTAGGTCCACAGTGAGTTTTAGGAATTAAGTTTAGGAAAGTGGAACAC  1554

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1555  AATTTTGGCACATTGTCTTTTTTTTTTTTTTTTTGGAGACGGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTG  1628

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1629  GCGCGATCTTGGCTCACTGCAACCTCCGCTTCCCGGGTTCAAGCAGTTCTCTGCCTCAGCCTCCTGAGTAGCTG  1702

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1703  GGATTACAAGCACATACCACCATGCCCGGCTAACTTTCGTATTTTTAGTAGAGACGGGGTTTCACCGTCTTGGC  1776

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1777  CAGGCTGGCCTTGAACTCTTGACCTTGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTCA  1850

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1851  ACCACCGCGCCCAACTGAACACTGTCTTTATAAAAACACAGTCCTTTCAGATGTCGGGACTTATTAATAATTAA  1924

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1925  ATATATTCAAATTTATTTGCAACAAAAAATTACCTTTCATAGAAATGTTACATTAAAAAATATATTTTAACTTA  1998

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1999  TACTTGATGTCATTGGAACTTTGTTAAACTTTGTTTATATTTTAGTGAAAGGAGAGGAAAATGTTCGATCAGAA  2072

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2073  AAAAATATATTTCTAATATATTGAATATTATCCTATCATTGCCACATATTGTGCACTATCAGAATTACATATCA  2146

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2147  TCTTTGTCTTTTCCTACTGTGGGAGTTCGATCAATTTGTAAAACAACATAAATTTTTTTCTATGGGCCAAACAG  2220

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2221  TGATTAGAATGGCTGAAACATAATACTGCTCTGAGGTAGCTGAAGCTAATGGTATTAAACACAAAGCCATATGG  2294

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2295  TAGATCTGCAATTAAAAAAAAAATCACATATAATGGAGGAACTGACATGCAGTACAATTTTATAAATTATGGGT  2368

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2369  TGTTGTAGCCTGTAGTTTTAACATGATACAAACATCACATAATTATCCTATAAAGGTTAATTTCATTGCTACAT  2442

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2443  TGACCTGACAGTTGCAGGAGTACAATAGCTGTCAATAAGATAAAATTGTGTTTTTGGTGGTTTTGGAGAAAGCT  2516

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2517  TTGAGGACTTGTTTTAGGAAAAGGCATTTAATCTATTTACAACATTATGTTTTGGTATTACTGGCATTTCTTTT  2590

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2591  AAAGTAATTCAGCATATTATCACTATAAGCTCAGAATTCCCTTTTCCTAAATAGAAAGTGACCTATTTTACTGA  2664

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2665  CTTTTAAAAATGTAAGATTACATTACATTTAACAACATCAACTGTCCATTGCAAACAGCAGTGAAGGAGACCAG  2738

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2739  TGGTGCAGGAGATACAAAACTTTTCACGCTTACTTTTGGAAGACACGTGTTATATAGCAAATGCGCCTTTCTGG  2812

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2813  TGGAGTCTGTTATATTAAATTTGATTTGTATTCATTTTACTGACAGCAGGAGATTGGTAGCCTAAAATCATGGT  2886

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2887  AGCTTCAAGAGAGTTTTCAACCTGGCATAAATTTCCTTTTTCTGTGAGGAATCCACAGGTAAGAATTGACTGTT  2960

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2961  AGAACAAAAAGATGATTAAGCACTTCATAAGTGCAGGGTTTTGTGAAAGTGGTTCATAATTATAATGTGGATAC  3034

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3035  ATTCCAGATTCTGTTAATGACCACCTCAACATCATACAGTATAGCCATTTTAATATGATGATGTTACGTCAACC  3108

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3109  TGTTGTACAACTACTTTATAATTTTACTGTGGGTGATGTGTGTTGAAGTGATCATTAAACATGCCTGTGTGCAT  3182

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3183  GTGTGTGTATATGTTTCTGTCCGTATGTCATCTTTATCATCAGTGTGAAACACGACTTCCTCTATATACACGTT  3256

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3257  TGAATTATTAGTTCCTTAAGTGGATCTGATAAATCCTTGGAAAAAGAAGGAGAATTTTGAGAAGTCCTGTGTGT  3330

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3331  TAGTTCCTCAAGTGGATATGGTAAATTCTTGGAAAAAGAATGAGAATTTTGAGAGATAATGTATATTTGATTCC  3404

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3405  TTTCTGAAATGGAACATAGTCTTGCCATCTGTCTTTGGCTCTTTTTATGACTGGTTCTGTGACTATAGAACAGG  3478

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3479  CCATATACATTATCTGAGCGCATGAGAAAAGCTCTACAGAGAATGGTGGTAGGCTGGTATGAAAGGCGCGATGT  3552

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3553  TGTTGTAGGGCATCGAGCCCCGGGCCGTCACCGTCACCTCGGCCGCTGCCGCTGTCACCATGTCACCATCGGGG  3626

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3627  CCGCTGCCGCTGTCACCATCGCCTTGTTCCCCCATCCCCCGCCATGGCTGAGGACCTCTCCGCGGCCACATCCT  3700

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3701  ACTGCCCCGTCTGTCAGGAGGTGCTCAAAACGCCCGTGCGGACCGCGCCCTGTCAGCACGTTTTCTGTAGAAAA  3774

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3775  TGTTTCCTGACTGCAATGAGGGAAAGCGGAGCACATTGTCCCCTGTGTCGTGGAAATGTGACTAGAAGAGAGAG  3848

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3849  CATGCCCTGAACGGGCCTTAGACCTTGAAAATATAATGAGGAAGTTTTCTGGTAGCTGCAGATGCTGTGCAAAA  3922

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3923  CAGATTAAATTCTATCGCATGAGACTTCATTGCAAATCTTGTAAGAAGTATCAGGATGAATATGATGTTTCTTC  3996

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3997  TATCATTCCAAACTTTCAGATCTCTGAAGATTCAGTAGGGAACAGCAATAGGAGTGAAACATCCACATCTGATA  4070

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4071  ACACAGAAACTTACCAAGAGAATACAAGTTCTTCTGGTCATCCTACTTATAAGTGTCCCCTGTGTCAAGAATCA  4144

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4145  AATTTTACCAGAGAGCGTTTACTGGATCACTCTAACAGTAATCACTTATTTCAGATAGTTCCTGTGACATGTCC  4218

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4219  TATTTGTGTATCTCTTCCTTGGGGAGATCCTAGCCAGATTACCAGAAATTTCGTTAGTCATCTAAATCAGAGAC  4292

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4293  ATCAGTTTGATTATGGAGAATTTGTGAATCTTCAGCTAGATGAAGAAACTCAATGTCAAACTGCTGTTGAAGAA  4366

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4367  TCATTTCAAGTAAACATCTGAAGGCTGTAGACATCTCTGCATCTTTGTACCTGCAAGTGCCATCTTTAAGGGGG  4440

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4441  AAACTACATGAAGTCACCGTTTCAGTAACTTGATGTGTATATTAATAAAAGTAATTCAGTCATTTTAGTTTTTG  4514

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4515  ATTGAAAATAAAGGTAGGGCTTCTAAAAACTTCATCCTCTTGGTAAGTTAAAAAATGAAAGTTATGACATTAGC  4588

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4589  TTTAAAAGCGTAAAAGATGTTTCACTAATGTAATGGTGAAAGAGAATCCCTGTTGTACTTTATCTTTTTGTAAT  4662

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4663  ATTAAATATTCTTGAATTTTTCATTATGTTGCTTTTGAAATTTGGTACATTCCTCCCATTTACTTTATTATTGT  4736

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4737  ACACATTAAACACACAGTAGCAAATTTTGAACGATGTGATATAATCTAACAAATCTGAGCCAGTTATTAGAGTT  4810

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4811  GCAGAATAGAAACTTGAAGTGCTAAATGGAAAAATCCAAAGGAAATTTTTTAAATGCAGATTCTAGCTGAAAAA  4884

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4885  TTCAACTATAAGAAAATCGTATTTATATAACATTTACTATTTTTGAAGACTAGTAATAATTTTAATTCTTTAAA  4958

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4959  AAGTGAAAGCTTGTTGTAAAGATATTTTCTTTTTGTTATTAGAAGGAAATACAGAGAGAAAAATTTATTTCTTT  5032

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5033  CATGGGCATTTGGTAATTTCAGTCTTTGACTGATTTGTAAGCCTAGAATATACTAAGCTGAATAGCAGCTCTTT  5106

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5107  GGCCTCAGAATTTTCAGTAGCCAGTATTTCTGATTAACTAAGTTGAAACTCTTATTAGAAACTTTCAGTTGGTA  5180

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5181  TTACTGTATTCTAGAAGATATAAATGAGAGGTTTGGCTTCATCTCAGTTTAGAAATTTATTCAAAGCTAAAGAT  5254

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5255  GTATATGTATATATATATACTTTTGTGTGTATATATACACGTATGTGTGTATGCAGTTTTTCAGGTTATATATA  5328

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5329  GAGTTTCTATAAGGATTTTTTAAATGGACAAGCAATAGGGGGTTGAAGTGTTTATCTGATTTGTTAAAATTTTG  5402

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5403  TGTATAACCAGATTTTTAAAAAGTGATAGTCACAGTGCTAAGTGATCTAGTTGGCTGCTATTACACCTTAGAAA  5476

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5477  TTGAGTTTACACACACACACAATTACCTGTTTGTATGGTGCTCATTTCTTATTCTCAGATATAATGTGTGACCG  5550

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5551  TGATACAGTGAGAAAGATTCTACCAACCACTGTTTCACTACTTTTTAGTCAAAATTGGGTATGTTCTTAGTATT  5624

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5625  CATTAGTGAGAATCATAAAGTATTTTGTAGAAGGCCCAAATCACAGAATAAAGGACTAAGAGTGGATTCACTGA  5698

Query   73  ---  72
               
Sbjct 5699  CAT  5701

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