Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_10261
Subject:
NR_029427.3
Aligned Length:
5766
Identities:
65
Gaps:
5694

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CTTTCTGATAGCAGGCAGCCATCTTGCCTGGAGCCTGAGAAAGGGAGGAGAGACAGAAGGAACCGGCGACAGTG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTCTCAGGGCCGCTCCGGGGGGCCTCAAGAACCGGAGGCAGCCCCGGAGGTGGTCCCCGATCCCGGGCTATGCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTTGGATCTGAGAAGGGAAGGCGGAGGGCGGCGGGGACAAGATGGGTGGAGAATGTCAAGCAAGGAATGCTAGG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CGGGGGAGGGGCGTTGCTATGGCGACTGGGGAGGGGCGGTGTCTGTTCTGAATCGCTGTGTGTCACCCGGGCGC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TGCCCAGGAAGGGCAGGGCTGGGGTGATGACCATGGTAACACCCGGGGGGGAGTTCGTGACATCTCCGGCGCGG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AGGGACTCGATGTCTATGGCAATGGTCGCCTGGTGGAAGGGACGGAACTAGATCCCTTCGCTCGGGACGCTCAC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ATTCCAGGCCCTTGTCCTGCAGGCTGCCGCGGGCGGACACGCCAGAGGAGGAGGCCGGGGAATGGCCGCGGTGT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GGCAGCAAGTCTTAGCAGTGGACGCGAGTTTCGGACGCAGTATATCCGCCGGCGCAGCCAGCTGCTGCGGGAGA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  ATGCCAAGGCTGGGCACCCCCCAGCGCTGCGTCGGCAGTACCTGAGGCTTCGGGGGCAGCTGCTGGGCCAGCGC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TACGGGCCCCTCTCCGAGCCAGGCAGTGCTCGTGCCTATAGCAACAGCATCGTCCGCAGTAGCCGCACTACTCT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TGACCGCATGGAGGACTTTGAGGATGATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCTGTCAGCAGAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GCTCCTACCAGCTGCAGGCGCAGATGAACCGTGCCGTCTATGAGGACAGGCCCCCTGGCAGCGTGGTGCCCACG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TCAGCAGCAGAGGCAAGTCGGGCCATGGCCGGGGACACGTCACTGAGCGAGAACTATGCCTTTGCGGGCATGTA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TCATGTTTTTGACCAGCACGTGGATGAGGCAGTCCCAAGGGTGCGCTTCGCCAATGATGACCGACACCGCCTGG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CCTGCTGCTCACTCGACGGCAGCATCTCCCTGTGCCAGCTGGTGCCTGCCCCACCCACAGTGCTTCGCGTGCTA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CGGGGCCACACCCGTGGTGTCTCCGACTTCGCCTGGTCCCTCTCCAATGACATCCTCGTGTCCACCTCACTGGA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TGCCACCATGCGCATCTGGGCCTCTGAGGATGGTCGCTGCATCCGAGAGATCCCTGACCCCGATAGCGCTGAAC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TGCTCTGCTGCACCTTCCAGCCTGTCAACAACAACCTCACTGTGGTGGGGAACGCCAAGCACAACGTGCATGTC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  ATGAACATCTCCACAGGCAAGAAAGTGAAGGGGGGCTCCAGCAAGCTGACAGGCCGTGTCCTTGCTCTGTCCTT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TGATGCCCCTGGCCGGCTGCTCTGGGCGGGTGATGACCGTGGCAGTGTCTTCTCTTTCCTCTTTGATATGGCCA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CAGGGAAGCTGACCAAAGCCAAGCGTTTGGTGGTGCATGAGGGGAGCCCTGTGACCAGCATCTCAGCCCGGTCC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TGGGTCAGCCGCGAGGCCCGGGATCCCTCACTGCTCATCAATGCTTGCCTCAACAAGTTGCTGCTCTACAGGGT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GGTAGACAACGAGGGGACCCTGCAGCTGAAGAGAAGCTTCCCCATCGAGCAGAGCTCACATCCTGTGCGCAGCA  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TCTTCTGTCCCCTCATGTCCTTCCGCCAGGGGGCCTGCGTGGTGACGGGCAGTGAGGACATGTGCGTGCACTTC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TTTGATGTGGAGCGGGCGGCCAAGGCTGCTGTCAACAAGCTGCAGGGCCACAGTGCACCTGTGCTTGATGTCAG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CTTCAACTGCGACGAGAGCCTACTGGCCTCCAGTGACGCCAGCGGCATGGTCATCGTCTGGAGGCGGGAGCAGA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  AGTAGGGTCCTGTCGGCCCTGCTGCTGTCCTCCATCCCACCCCTCTTACTCCAGCCTCGTGTTGTAAATAAAGT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TTCGGTGGTCATGCTGAGGGCCGGCTCCCAGCTCTGCCGGGGACGGACAGGGCAGAGGGCAGCGGGCAGCTCCA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GGAACACGGTGGAACGGGGTTCATTGACTCATTTGTGCATTCATGCATCGACGGATTCATTCATTCCACAAGCA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TTGATTGAATGTCTGCTGGGTTACAGGCCCTGCCTTAACTGTTTTACACACTTATGCATTCGATAGACATTAGT  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  GAGCCCTGACCGTGTGCCAGGAACTGTTCTAGGCACTGGGGATACTGCTCTGACCTAAACTGATGGAAATGCCT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GCCTTCATTGGGCTTGCATCATAGCGGAGACAGTAGATAAAAACATGGAACAGGCCAGCTAATGATGAGTGGTA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  TGAAGAAAATAAAGCAAGGATGGGAGACAGAGCTGCAGAAGTTGGGGGAGTGGGCTCTTTATGGTGACAGCATC  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  AGGGAAGATGATCCTGACAGGGTGACTTTTTTGTTTTTGAGACAGGGTCTCACTCTGTCACCCAGGTTGGAATG  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  CAGTGGCATGACCATAGCTCACTGCAGCCTCAACCTCCAGGGCTCAAGTGATCCTCACTTAAGCCTCCCAAGTA  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  GCTGGGACTACAGGTGTGTGCCACCACACTCGGGTAATTTTTGTATTTTTAGTAGAGACGGGGTCTCGCCATGT  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  TGCTCAGGCTGGTCTTGAACTCCTGGGCTCAAGCGATCCACTCGCCTCAGCCTCCCAAAGTGCTGGGATTACAG  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  GCATGAACCACCACGCCTGGCTCAGGGTGACATTTAAAGACCTGAATGAAGTGAGTGGGAGTCATAGTGTAGGG  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  GGAGAACATTCCAGGCAGAGAGAAAGCCAGCCTAAAGGCACTGAGGCTGGAGCGCTCCAGAAGGATCATTGTGT  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  ATGCCAGAGTCTTGCTGGACCAGAGTGTGACAGTACATGAGGTCAGACAGGCCAGATGCTTCATGGGCCACAGT  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  TAGGACTTTGGCTTTTTTTCTGAGTGGGGGTGACCAGAAGGTGTCAAGCAGAGGAGGAACATGATCTGACTTGG  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  TCATAGAGGCTCCCTCTGGCTGCTGAAGGGGACAGATTGGGGGTGGGGGTAGAAGCAGGGGACCCAGCAGGAGA  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  CCCCTCTGAGCGCAGTGATGGGGACTTGCACCAGGGTAGTGACAGTGGAGGAGTTGGCGGGGGAATGTTGGGTC  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  GGACCCCCAGGGGGTTCACTATGTTAGGCTGCAGGACTCTGCTGCCTCCTCAGGGGGCGATATTCCCAACCCTT  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  CTGTGCATTGTGTTGTTTATTAAAAGCAGGGAGCAGAGGTGTTGAGTCCTGGAGCCCCAAGCTGGTGCAGGAGC  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  AACGGGAAGTTAAGGCTGACCTGGGGCCTCCTGCTGTGTGGCGGAATCTCCATCCCTCAGACCACCCCTGTCTC  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  CTCCCAGCCCCATCCAGGGTACAAATTCCAGCCCTGGAACAGCTCAGAGACCAAAAAGTGATGTTAAGTATTTG  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  AGGGGAGCCCCAAGAGAGGAGAAAAAGCTTTGAGTATTGATGGGGGTAAATAACCAAAATCACTTATCAGTGGC  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  CTGCGTCACCAGAAAATGTCAAAGTTACCTGAAGCAGCAAAGAGGCTCTTGCTCCGGCCCCTCCCTTCCTTCTC  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  AGCTCCATTTGTTGCCACATATGCGTTGACTGGAACTGCGACTGACATCTTGGGACCTTAGGGTCAGTCCACAG  3700

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3701  CGTGGTAGAGACTCCAGCTTGGCCCAGCATTGCTGAGCTGCTGAACTCGCACCAACAGTCTTGTTGGAGGGAAA  3774

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3775  TAATCTCCCGTTTGTTCAGTCCAGTTATTTGACAGTGTGGTTACTTGCACCCCAAGCATTTCTAACTGGCACTT  3848

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3849  CCATCTAATAGACCTCAGGGTACATGGTGGTGAGATAGGGACATCAGTGAGCTGGATTGTTCCCATGGTAAAGG  3922

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3923  TCATGTATGTGTGTGTGTGTCATGGTCCTCAATACCAGCCCCAAGCCCAGTGATTTGCTAGGAGGACTCCCAAG  3996

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3997  ACTCAGTATGTGGTTGTATTCATGGCTACGATTGACTTATTACAACAAAAAGATATGGAGCAAAATCAGCAAAA  4070

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4071  AGAAATGGTGTGCAGGACCAACTCCCAGAGAGACCCAGGCACAAGTTTCCAGGGCTTCTCTCTCATTGGAGTCA  4144

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4145  CACAAGATGTGCTCGGTTCACAGTAATGGGTTGTGACAATACATGCGAAATGTTGCTGACCAAGGAAGCTCAAT  4218

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4219  TAGAGACTCAGCACCCAGAGGTTTTTTTTGTTGTTGTTGTTGTTTTGGTTTTTTTTTGGCGGGGGGGGGGGGGT  4292

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4293  CTTGCTCTGACGCCCAGGCTGGAATGCAGTGGCATGATCTTGGCTCACTGCAGCCTCCACCTCCTGGGTTCAAG  4366

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4367  CGATCCTCGGGCCTCAGCTTCCCGAATAGCTGGAACTACAGGCGCGCACCAGCAAGCTCGGCTAATTTTTGTAT  4440

Query    1  -----------ATGGGGTTTCTCCATGTCGGTCAGGCTGGTCTGGAACTCCTGACCTCAGGTGATCCGCCCACC  63
                       ||||||||||.||||||.||.|||||||.|||.|||||||||||||||.|||||||.||||||
Sbjct 4441  TTTTAGTAGGGATGGGGTTTCACCATGTTGGCCAGGCTGATCTTGAACTCCTGACCTCAAGTGATCCTCCCACC  4514

Query   64  TCAGCCTCC-----------------------------------------------------------------  72
            |||||||||                                                                 
Sbjct 4515  TCAGCCTCCCAAACTGCTGGGATTACAGGCGTGAGCACCTGGCTGGTATCAAGTTTTTATTGGGGCATGGTCAC  4588

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4589  ATAGGCACCCCCTGCCTGGCACCTACCCAAATCCCAGGCTCCCAAAAGGAAAGCAGGGGCTCAGCATAAACCAC  4662

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4663  CTTTTTTTTTTTTTTTTTAATTGAGACGGAGTCTCGCTTTGTCGCCAGGCTGGAGTGCAGTGGCGTGATCTCGG  4736

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4737  CTTACTGTAACCTCCGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCTTCCTGAATAGCTGGGACTACAGGC  4810

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4811  GCCTGCCACCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATATTGGCCAGGCTGG  4884

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4885  TCTCCATCTCTTGACCTTGTGATCCGCCTGCCTCGACCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGC  4958

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4959  TCCTGGCCCACTTTTTTATACAAACAGCTTAGGTAGAGTAAGCCATTCTTTTTTTTCTTTCTTTCTTTTTTTTT  5032

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5033  TTTTTTGAGACAGGGTCTCACTTTGTTGCCCAGGCTGGAGTGCAGTGGCTCAAACATGGTTCGCTGCAGCCTCA  5106

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5107  ACCTCCCAGGCTCAAGCGGTCCTGCTGCCTCATCCTCCAAAGTAGCTGGGACCACAGACATGCACCACCATGAC  5180

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5181  CCCAGCTGATTTTTGCAGAGATGGGTTTTGCCATGTTGCCCAGGCTGGCCTTGAACTCCTGGGCTCAAGTGATC  5254

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5255  CTCTCACCTTGGCCTACCAAAGTGCTGGCGTTACAGGTGTGAGCCACCACACCCGGCCCGAGTGAGCCATTCTT  5328

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5329  ATCTCTTAGGGAATGGTGGGAACCCTCCTGGAGTCTATGTTCTTAGACACCACCCAAGGGCCAACCTTGAAGCA  5402

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5403  GGCCTTTCCAAGGATCGCAGTTGAGGCCTGCTCTGTTACTGTTTTTCTGCACAGTGTGCAACACCACACAGATG  5476

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5477  CCCAGTTTCTACCAAGGTCTGTGGATGGCAGGATAATTTTGAGGAACCTCCTTTTTCGCTAACACTTTCTTCTT  5550

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5551  TTGTTTACACTCTTCACATTGTCTATTGAGTCTGGATTCAAGATGATTGATTGTGAATATTGTTGTGCATGATT  5624

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5625  TTGGGGGTTTCCTCCTTGTGAAATTTTGAGGTGGCAGATTTGACATTCTACTTTAAACTCATCTTGGTGGCACT  5698

Query   73  --------------------------------------------------------------------  72
                                                                                
Sbjct 5699  TTTCTTGACTCACCACCTAAGGGGGAATAAATAATGAAGAAAGAATAAAAATAGTGTTATCAGTCACA  5766

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