Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_10261
Subject:
NR_103742.1
Aligned Length:
5436
Identities:
63
Gaps:
5364

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGCATTTGGTGGGGCCTTTGTATCTCACTCCCGCCACAGCTTGGGATCGGTCTCTGCTGTTTTACGTCCTCCAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTCGGGAGCCCCCGGTGACTGTCACAGCCTCTTGCCCTGTGATCTGCAGGTTCTGGGAGACGCACAGCTAAGAT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCCAGGACATCCTGGAAGCTGGGAAAAGGTTCTGACAACAAAGGAGATTGTGACATATTGCTGGGCCTAACACT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AAGGTGATGTTAGTTATTTGCTTTGGCTGTGCCCTTGGAAGGCATTGAGACATACTGCTGTGCCCAGCACCAAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  ATGATGTAACGTGACTCTTCTGCTTCAGGCCTGCCAAAAGAAAAGATTGTGACAGATCACTGGACCCAGCACCT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AGGTAGGATTGTGACATATATCTGGCCAAGCGTACAGATGTAATGATGACTGTCATACCTTGAAGAAGCCAATA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GCAGAGAGAATGTTGCTCTCAGGCTTAGGAAAATGAGGAAGTCTTTCTGTACAAAAGTCATAAAGAATTACTAC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TCTCTCACATATATTACGCCCTAGTGTGTTACAGAGAATGTCATAACAGGGCCCAGCACACAAGTGAGATTGTG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TTTGTCCTATGCACACTACACCAACCTTTACAGTTGTCACCCTGACCCATTGACAGAGTCTGCTAGTGAGGTTC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TGAATTACATGTGAACACAGTCCGCAGTTGGAATTGTGACTGTCATATGTGAACATCTGGCTACAGTTGGGATG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GTGACTCATTTCTAAATCCAGCTCATAGGAAGGTGAAGACTCTCCTATCTGGACTCAGTTGGTGAGAGAGATGT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TGACTCTCATATCTGGGCTTAGAACCACAGGAAAGATTCTGGAGCTCCTTGTGCAAAGGTCATAGAGGATTATC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AATCTTGCATATTGTATAAAGTCCTCAGGTGACACAGAGTGTCTCTCGAATGCACACCCAGGCAACAGTAAAGA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TTGTCATTCTCCCACATAAACACATCCCACTGTTGAAGTTCTGAATTTCACAGAGGCTGTCAAAAGTTGGATAA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TTGCCTCTCATGTGTGGATCTGGTCCACAGGTGGGTTAGTGACTTCCAGACCAAGGTTCAGCGCACATGTAAGG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CTGTGACTACACTAAGAAGATACAGTCTGCAGAAGAAACTGTGGCTCTTTTGCACACATTCTGTCAATCATTGT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GATTGCGACTCATGTACTTAGACCCAACATACAGGAGGTGTTGACTTTCATACCTTTAGAACCTGGACATGTTT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GGAATTTCTAATCTAATCCCTGGACTTTCCTGCAGGTGTGATTGTGTGCATTGCAAAGCACCTTAGTGATTTGA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CTCTCCTGCCTTGGCCAAGCACACAAATGAGATTGTGACATATGGCTTGACTCTGAACCTCCAAGATGTGACTC  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TTTTTTCCAGCCTTGGAGCTGCCCACATGTTGCATTGTGACATATTCCTAAGCCCTGCACTCAGGTTATGTGAC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TCTCCTTTTTTGCTTAGGCCCTGAATATTTTTCATGTTAAGACATATTACTAGGTCCAACACCTATAAAATGGG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  AGACTACCACCTGGGCTCTTTCTACAGAGGGCCTTGTGACATACCTCTGCATCAATAACCTAGGAGATGTGATG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  CTCCATTTTTGCCTGTACGTGCCCCACAGAAAAAATTGTGGCTGGCCCAGGTACCAGGTGATGTGTCTCTGCTG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CCTGGGCCTGGACCACAGAGAGCATTGTTACTGATTGCTGGGCTCAGCACCCAGGTGATGTGACTCTGCTGCCT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GTGTGCTGCTTTCAGGAGAAGGTTGTAACTTATTCCTGGCTGAGTATGCAGTCACACTCCTGACTGATCTCTGC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CCTCAGAAAAGGTTGTGTCAAGCCGGGCCCGGTGGCTCATGCCAGTAATCCCCAGCACTTAGGGAGACCGAGGT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  GGGTGGATCGCCTGAGGAGTTTGAGACCAGATGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TTAATCGGGTGTGGTGGCGGGCACCTGTAAACTCAGCTATTCGGGAGCCTGAGGCAGGAGAATTGCTTGAACCC  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GGGAGGTGGAGGTTGCAGTGAGCCAAGATCATGCCACTGCACTCCAGCCTGGGCAGCAGAGCAAGATTCCATCT  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TGGGAAAAAAATTACAAAAATTAGCCAGGCGTGGTGGTATGCACCTGTAGTCCCAGCTACTTGAGAGGCTGAGG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CACAGCAGTCACTTGAACTTAGGAGGCGGAGGTTGCAGTGAGCCAAGACTGTGCCATTGCACTCCAGCCTGGGC  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  AACAAGAGCAAAACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAGGTTGTGTCATATTCCTGGCTAAAAACCC  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  AGATGATGTGACTCTCCTCTCTCCCTATTCATAGGCAGGATTGTAAAATATATCTTTTTTTTTTTGAGACAGTT  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TCATTTTGTCACCCAGGCTGGAGTGCAGTGGCATGATCTTGGCTCACTGCAACCTCCGCTTCCTGGGTTCAAGC  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  AATTCTCTTGCCTCAGCCTCCTTAGTAGCTAGCCACCACACCTGGCTAATTTTTGTATTTCTATTAGAGATAGG  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  GTTTCCCAATGTTGGTGAGGCTGATCTCAAACTCTTGACCTCAGGTGATGCACCTGCCTCAGCCTCCCAAAGTG  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  CTGGGATTACAGGTGTGAGTGACTGCGCCTGGCCTGTAAAATATATCTTGACCTAGATCACAGATGCAATGATT  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  ACTCTCATACCTCACAGTATTTAATAGGAGAGATGCTCTCTCTTGCTCTCGCTCTCTTTTTTCTTTTTTTTTTT  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  TTTTGAGACAGTTTTGTTCTTGTTACCCAGGCTGCAGTGCAATGGCGTGATCTCTGCCCACCACAACCTCTGCC  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  TCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCACGTAGCTGAGATTACAGGCATGTGCCACCACGCCCAG  2960

Query    1  -----------------------ATGGGGTTTCTCCATGTCGGTCAGGCTGGTCTGGAACTCCTGACCTCAGGT  51
                                   ||||||||||||.||||.|||.||||||||||.|||||||..|||||||||
Sbjct 2961  CTAATTTTGTATTTTTAGTAGAGATGGGGTTTCTCTATGTTGGTTAGGCTGGTCTCGAACTCCCAACCTCAGGT  3034

Query   52  GATCCGCCCACCTCAGCCTCC-----------------------------------------------------  72
            ||||.|||||||||.||||.|                                                     
Sbjct 3035  GATCTGCCCACCTCGGCCTTCCAAAGTGCTGGGGTTACAGGCATGAACCACTGTGCCCAGCCCAAGATGCTGTC  3108

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3109  TCTTAACAGCTAGGCCTAGAGTCATGAATATGATTCTGGGTCTCCTTGTACAAAGGTCATGAAGAATTGCCACT  3182

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3183  TTCTTGCATACTGTATAAATCTCTTGTGGTACAGAGAGTGTCATTACAGGGTTCAGCATACAGATGAGATTGTT  3256

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3257  TCTCATATACACTCCCCACCAACTGTTAGAATTGTCACCCTCACACATGGACAGAGCCCACTGGTGAGGCCCTG  3330

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3331  AATCTCACACACACACACAGTCTACAGTTAAAATTGTGACTGTCATATGTGAACATCTGGCTAGAGTTGAAATA  3404

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3405  ATGACTTATTTCTAAATCCAGTTCATAGGTGAGAATTCTACCTGTCTAAGCCTAGGTAGGATAGTCAACATGTC  3478

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3479  CCTAATTGGCTGGGGGACATGTTGACTCTCCTACCTGGGCTTAGGGCCAAACAGTTCATGGAAGGGATGAAGGC  3552

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3553  TCTCAGCTCTCATGCACAGATCCAGTTGGTGAGATTGTCACTAGCATACTTAGACCCAACATACTCTGATACCT  3626

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3627  AGAACTGGGACATGTGCAGGATTTTTAATTACTGGACCTTCCTGCAGGTGTGATTGTGACATATGTCTTTGTTA  3700

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3701  CACACCTGAGTGGTTTGATGTTCCTGCCTTGGTTCAACCCAAAGTGAAGATTGTGATGTGTCACTGGACCCAGC  3774

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3775  ATCTCAGTGATGTGACTCTTCTTTTTGGACACCACAAATTTTGGGTATTGTCAAATATTGCTGGATCCTGTACC  3848

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3849  CATGTTATGTGACTCTCCAACCTATGTCCTGCATGTTGTGCCATATTGCAGCACAATGTGTCACATTAGACATC  3922

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3923  ATTACATATTGCTGGGCTCAACACCCAAGTGATGTAACATTTTCCTGGGCCTTGACTACAGGGGGCTTTGTGAC  3996

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3997  ATAACTGAATGCCCATAACCATGGTAATGTTACTCTTCTCCTGCCTGGTCTCTGCTCACAGGGAAATTGTGACA  4070

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4071  TACCATTGGCCTAGCATCTTGGTGATGTGACTCTCCTCTTTTTCTCAGGCCCCACATATTTGGGTATTGTGACA  4144

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4145  TACCCAAATGTGACACTGGGCTCAACACCTAAGGGACGGGAGTTCTCTACCTGGCCCCTTCCTGAAGGGGGCAT  4218

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4219  TGTGACATACTTCTGCACAGGTATGTCACAGTTATTACCTAGGAGATGTGACTCTCCTCTTTTGCCAGCACCCT  4292

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4293  GCTTACAGGGAAAATTGTGGCACATTTCTGTGGCCAGCAACCAGGTGATGTGTTTCTCCTGCTTGGGTCTTTAT  4366

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4367  TACAGAAAAGATGGTTGACATATCACTAGGCCCAGCATCTAGGCGATGTGACTGTCTTCTTCTGCCTGGTCCCT  4440

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4441  GCTTACAGGAACATTGTAGCATATTGCTATGCCCAGCACTTTTCTCTTCTTTTAGGTTTTGCCTGCAGGAGACT  4514

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4515  TTGTGACATTGCTGGGCCCTGCACTGACATTATCTGACTCTTCTGTCTCTGCCTACTTGGGCCATTGTGACATA  4588

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4589  TTGCTGGGTCCAACATCCAGGTGATGTAACTTTTATGCCTGGGTCCTGGCACCAGAGGACATTGTCTTTGCACC  4662

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4663  ACTCACACAGGTGATGTGATTTTCTTCTGTTACCTGGTCTCTGCTCACAGGAAGAATTGTGACCTTGGCCAGGC  4736

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4737  TCGGTGGCTCACACCTGTAATCATAGCACTTTGGGAGGCCGAGGCGAGTGGATACCTGAGGTCAGGAGTTCGAG  4810

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4811  ACCAGCCTGGCCAACATGGTGAAACCCCCATCTTACTTAAAACACAAAAATTAGCTGGGCGTGGTGGCAGGCGC  4884

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4885  CTGTAGTTCCAGCCACCCACGAGGCTGAGGCAGGAGAATCGCTTGAACCAGGTAGGCGGAGATTGCAGTGAGCC  4958

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4959  GAGATTGCGCCACTGCACTCCAGCCTGGGTGACAGGGAGACTCCATCTCAAAGAAAAAAAAAGTGACCTTTTGC  5032

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5033  AGCACATAGCTGATTTGACTGCTTTGTGGAGTACACCAAGCAGGTTGTCAAACTGGTGGTCCCTTTACTGAAAT  5106

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5107  TTTATTTCCACAATGGTGTTGGAGGGGCAGCAGCAGAATCCGTGCCTTTTCTTCTGGAGTGTGTGAGAGTCCGT  5180

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5181  GGTCCTGAGTATCTCACACAGATGTGGCAATTTATGTGATGTTCTGATTAAGACCATTGGTACAGAAACAGATT  5254

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5255  CAGATGTCCTCAGAAATAATGCATTGTTTAGCAAAGTGCATTGAAGTTATGGGAGATGGATGCCTTAATAATGA  5328

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5329  ACACTTTGAAGAACACCTTTGCCACATGTCCTCAGGACCTTCTGAGGGCTGTGTCATGGGGCATGGTCACTCAT  5402

Query   73  ----------------------------------  72
                                              
Sbjct 5403  ATTTGACTCAATAAATTTCTTCAAATATTTTAAA  5436

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