Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_10261
Subject:
NR_110279.3
Aligned Length:
4781
Identities:
65
Gaps:
4709

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGTTGCTGTGGAAGCCCCATAGGCAGGAGGCCCCCGGGCAGCACATCCTGTCTGCTTGTGTCTGCTGCAGAGTT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTGTCCTTGCATTGGTGCGCCTCAGGCCAGGCTGCACTGCTGGGACCTGGGCCATGTCTCCCCACCCCACCGCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTCCTGGGCCTAGTGCTCTGCCTGGCCCAGACCATCCACACGCAGGAGGAAGATCTGCCCAGACCCTCCATCTC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGCTGAGCCAGGCACCGTGATCCCCCTGGGGAGCCATGTGACTTTCGTGTGCCGGGGCCCGGTTGGGGTTCAAA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CATTCCGCCTGGAGAGGGACAGTAGATCCACATACAATGATACTGAAGATGTGTCTCAAGCTAGTCCATCTGAG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TCAGAGGCCAGATTCCGCATTGACTCAAAAGCTCTGGAGGCCCGGACTCCCCGGACACAGAGCCCGGCTCCTCA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GCTGGACCCACGCAGAGGCCGTCGGACAACAGTCACAATGAGCATGCACCTGCTTCCCAAGGCCTGAAAGCTGA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GCATCTGTATATTCTCATCGGGGTCTCAGTGGTCTTCCTCTTCTGTCTCCTCCTCCTGGTCCTCTTCTGCCTCC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  ATCGCCAGAATCAGATAAAGCAGGGGCCCCCCAGAAGCAAGGACGAGGAGCAGAAGCCACAGCAGAGGCCTGAC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CTGGCTGTTGATGTTCTAGAGAGGACAGCAGACAAGGCCACAGTCAATGGACTTCCTGAGAAGGACAGAGAGAC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GGACACCTCGGCCCTGGCTGCAGGGAGTTCCCAGGAGGTGACGTATGCTCAGCTGGACCACTGGGCCCTCACAC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AGAGGACAGCCCGGGCTGTGTCCCCACAGTCCACAAAGCCCATGGCCGAGTCCATCACGTATGCAGCCGTTGCC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AGACACTGACCCCATACCCACCTGGCCTCTGCACCTGAGGGTAGAAAGTCACTCTAGGAAAAGCCTGAAGCAGC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CATTTGGAAGGCTTCCTGTTGGATTCCTCTTCATCTAGAAAGCCAGCCAGGCAGCTGTCCTGGAGACAAGAGCT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GGAGACTGGAGGTTTCTAACCAGCATCCAGAAGGTTCGTTAGCCAGGTGGTCCCTTCTACAATCGAGCAGCTCC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TTGGACAGACTGTTTCTCAGTTATTTCCAGAGACCCAGCTACAGTTCCCTGGCTGTTTCTAGAGACCCAGCTTT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  ATTCACCTGACTGTTTCCAGAGACCCAGCTAAAGTCACCTGCCTGTTCTAAAGGCCCAGCTACAGCCAATCAGC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CGATTTCCTGAGCAGTGATGCCACCTCCAAGCTTGTCCTAGGTGTCTGCTGTGAACCTCCAGTGACCCCAGAGA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CTTTGCTGTAATTATCTGCCCTGCTGACCCTAAAGACCTTCCTAGAAGTCAAGAGCTAGCCTTGAGACTGTGCT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  ATACACACACAGCTGAGAGCCAAGCCCAGTTCTCTGGGTTGTGCTTTACTCCACGCATCAATAAATAATTTTGA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  AGGCCTCACATCTGGCAGCCCCAGGCCTGGTCCTGGGTGCATAGGTCTCTCGGACCCACTCTCTGCCTTCACAG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TTGTTCAAAGCTGAGTGAGGGAAACAGGACTTACGAAAACGTGTCAGCGTTTTCTTTTTAAAATTTAATTGATC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  AGGATTGTACGTATTCAAGGTGTAAAATGTGATAATTTGTCGTACACGTACATTGTGCAATGACAGTCACAATC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  AATTCCTCAGCGCACCCATCGCCACAGATACGATACATTAGATATTCTGAACTTGCTCATCTTAGGACTTCACA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TTGGTGTCAGTGTTTTCTGACAAATCACGTGTATCAGGAATGAATGAGGGAGGTGTGGCTGGGTGAAGGCAGAG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  AGCCGACCCTACAGGTCCACATCTGCACATACATGCACAGGAATGCATGCTCTCACACACATGCATACACACAC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  GCACACACACAGACATGCACATACACTCACACGCCCCAGGAAATCCAAGGAATCACTGAGCCTGCTGTTGGTTG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  AGGCATTTCTGAGTATCCACCCTACCTGTAGGGTCAGATGTACTGATTGACACAGAAAATTACCCTATGTACCA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  CTAGGAGGCGGCAGAATCTCATTTGGGTTAATCTGTGTTTGTCTTTAAAAAACAAAAACAGGCCGGGCATGGAG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCC  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TGGCTAACACGGTGAAACCCCATCTCTACTAAAAATACAAAAAAATTAGCCGGGTGTGGTGGTGGGTGCCTGTA  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GTCCCAGCTACTCGGGAGGCTGAGGGAGGAGAATGGCGTGAACCCGGGAGGCGGAGTTTGCAGTGAGCCGAGGT  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  GGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCAAAAAAGAAAAGAAAAGAAAAGAAAGATTT  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TTAAGAATTCAGCAAAAACTCAGCCAGCTCTTTCTATGGGGCAGTTGCTAATTTAGTTCTAGGCAAACGTGGAC  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  ACATTAAATTCTCCTACAAACCCTCCACAGCGTGCTCTATTATTTTCCTCATTTATAAAAACAGAAACTATGGA  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  CCGAGACATGAAGTAACCTGTCCAAGGTCGGCCAAGTCTCAGAGACAGGGGCTTCAGACCCACCTGAGGCTCCT  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  GACTCCACATTATGAACCCCGGGATGGGCTGCAGCTCGGTCTGCTGGGAGGTTTCTGTGCTGGTTCAAAGAGGG  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TGGTACCTGACTGGCCTACCCAATTTTAATTTGTACTGAGCTTTAATTTTCTATTTGTGCTCAGGTTTAATTTC  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  CTCCTGGGATCTGCTTCCCAGTGCTGTACTCTGTATCTTTGCTTTCTTGTGTGAACATTGTGACCGATTTTCCC  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  TGTTCTTCACGTGGGACACATTCTCCCTGCTCTGTCTGTCTCTGTCCCTGTCTCTCTTTCTGTCTTTCTCTCTC  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  ACTGTGTGTCTCTCTGTCTCTCTCTCTCTTTTTTTTTTTTTTTGAGATGGAGTTTCGCTCTTGTTGCCCAGGCT  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  GGAGTGCAATGGCACAATCTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCT  3108

Query    1  -----------------------------------------------------AT--------------GGGGT  7
                                                                 ||              ||||.
Sbjct 3109  CCTGAGCAGCTGGGATTACAGGCATGCACCACCACACACGGCTAATTTTTTGTATTTTTGTTAGAGACGGGGGG  3182

Query    8  TTCTCCATGTCGGTCAGGCTGGTCTGGAACTCCTGACCTCAGGTGATCCGCCCACCTCAGCCTCC---------  72
            .|||||||||.|.||||||||||||.|||||||.||||||||||||||.||||||||||||||||         
Sbjct 3183  CTCTCCATGTTGCTCAGGCTGGTCTTGAACTCCCGACCTCAGGTGATCTGCCCACCTCAGCCTCCCAAAGTCCT  3256

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3257  GGGATTACAGGCATGAGCCACTGCGTCCAGCCGTCTTTGTCTCTTTTTCTACATCTCTGTCTTTCTTCTCTGGT  3330

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3331  TGTTTTTCAACCATCAGCTGGGTGTTTTCTCCCATAACGTCTTGTTTGTTTGACTATGAGGTTGACAGGTGGGT  3404

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3405  ACATGAACTCTATAGCAGAAGGTGGACAGTCTGCACATAGCAGAGGATGGGTGAATTTTTCTACCCCTTGCAGA  3478

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3479  GCACAGGAGAGCTGAGCAGATGCCAGTGTCTGCTCCAGTGTAAGGAAGTCCAGGAAGTTCAGGTGGTGAGGTCA  3552

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3553  CAGTGGAAAGCAGGACAGATAGAGTTTAGGGGAAATTAAGCAAAAATACCACACTGTTATTTCTTGACATATTA  3626

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3627  GTGGAAAGAGGAAGGGCCCAGAGAGAAGACAGAAAATTAGATGCAGGGGCTTGTTTTTTCTCTTGACTTGCCAA  3700

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3701  CCCGCCCAACGCAGGGGCCAGAACTCAGGGTGGTGAGATCTGGGAACATTGCTGTGCGGAGAAGATGTCCCTCC  3774

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3775  TGCTGCACGGGCCCCCAAGCACCACCTGGGGGAAGAGCCATGTTTAATTCACCTGGCAGTGCAGTGTGGCCAGG  3848

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3849  CAGAGAGGGAGGGCCTACCCTGTGCTTATGATCCCACCCCAGTTCCCCTGGGGTGTGCCCTGGCGGTGAACACC  3922

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3923  AGGAGGCTGCAGTGGGGCCCAACGTGAAAGGGAGGAGCAGCCTCACCGGGGCCAGATGGGGCAGCAGCAGATAT  3996

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3997  TCACAGATGTCCCTGTGAGTAACCAGGGCAGAGGCCAGGGGTCTGGCCTTCCCTTTCTTGGAGCCCTGGGCCAG  4070

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4071  CTGGGCAAGGCGTTGAGAGAAAGATTACCCGGTGACCTTTATCAAAGCAGAGTAAGGAGGGCTTTATTCAGAAC  4144

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4145  CATCACTGTAGGTACCAGGACCCCAGCGGTGGGATTTTGTAGTAGGGGAAAGAAAATGGGCTCGACGTTGAATA  4218

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4219  CAGCATGAACAAGTGAGAATGTTTGTTATACAAACTATAGGGTGGACTTTTTTTTTCTTTTTTTTAACTTTTTT  4292

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4293  TTACCTTTTAGTGTAAAACTGAACATAGAAAATAAATTCATGAAGAAGGGATATTTTCTGAGGGTGTCCAGGGC  4366

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4367  TGCCCAACACCTCGTCTACCTTCTCTGTCATAGCCCCATTTAAAACACTCTCTCTGGATGAATACACCAAACCT  4440

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4441  CACAGTCTTTGCTCTCTTGCTAGGAAGAGGAGCAAGAGCGTGTTTCACTCTTGGCTCCTGCTTACACACCTGCT  4514

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4515  GTCCAATGGAAACTACTACTTAAGACATTTAAAAATAGTTGTGGTGATAGCATGTTGTGTTTTGGTTGGTGATG  4588

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4589  CCAGTTAGTCTCTGAAAACTTTCTGTGATGAGTGTAAAATTCTACACCTTAATCTCCTTTCTTGTAGGATCTGG  4662

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4663  GAAGCAGTATGCACTTGATTGCACCAAAGATTTTACGTTCATAGAAAATTTCTGGCATCTGTGTGAAGAAAGTA  4736

Query   73  ---------------------------------------------  72
                                                         
Sbjct 4737  AACTATATCTTCCATTTAGACAAATAAAATATCTTTTTGATAAAA  4781

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