Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_10261
Subject:
XR_001737159.2
Aligned Length:
4206
Identities:
65
Gaps:
4134

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCAGCCACCCTGGGGAAGGTGGATGCCGGAAGAGGCGTCGCCTGCGGGTCACCCAGAGGACACCCGGCGGGGAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TTCCGAGGGTGGGAGTGAGGAGAGGTAGGAGAGGCCACGGCAGAGGGAGGCCCCGCGCAGAGTGGGAACCATCG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCCGGTGCGGGCCTGAACTTCCAGGGCCGGCTACTCCTCGGCAGAGCGACCGCGCGGTGTCTCAGAGCGCGGCC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CGGAGCCGCACTAAGAGCGCTGGACGGCGGGAGAGAGGCTCGGAGGACCGGTAGCTCCCAGCAAAGCGGCCCAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CGGATGTCGGGAGCTATCTTCGGGCCCCTGGAGGGCCCGAGCTCCCTGGATGCCCCGAGCATCCACCCGCTGGT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GTGCCCGCTGTGCCACGTGCAGTACGAGCGCCCGTGTCTTCTGGACTGTTTCCACGACTTCTGTGCCGGCTGCC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TGCGTGGCCGCGCGACCGACGGCCGCCTCACCTGCCCGCTGTGCCAGACGTGGAGACCACGTACTTCTGCAACA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CGTGCGGACAGCCCCTATGCGCGCGCTGCCGCGACGAGACGCACCGAGCACGCATGTTCGCGCGCCACGACATC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GTGGCCCTGGGTCAGCGAAGCCGCGACGTGCCCCAGAAGTGCACGCTGCACGCAGAGCCCTACCTCTTGTTCTC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CACCGACAAGAAGTTGCTGTTGTGCATCCGCTGCTTCCGCGACATGCAGAAGGAGAGCCGGGCACACTGCGTGG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  ACCTGGAATCGGCTTACGTGCAGGGCTGCGAGCGGCTGGAGCAGGCGGTGCTGGCCGTGAAGGCCCTGCAGACG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GCCACGCGGGAGGCCATCGCGCTGCTGCAGGCCATGGTGGAGGAGGTGCGGCACAGCGCCGCCGAGGAGGAGGA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CGCTATCCACGCCCTCTTCGGCAGCATGCAGGACAGGCTGGCAGAGAGGAAAGCGCTGCTGCTGCAGGCTGTGC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AGAGCCAATACGAAGAGAAGGACAAGGCCTTCAAGGAGCAGCTCTCTCACTTGGCCACCTTGCTGCCCACCCTG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CAGGTCCACCTGGTCATCTGCTCCTCCTTCCTCAGCTTGGCCAACAAGGCTGAGTTCCTGGACCTGGGCTATGA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GCTGATGGAGAGGCTGCAGGGCATCGTCACGCGGCCGCACCACCTAAGGCCTATTCAGAGCAGCAAGATTGCCA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GTGACCACCGAGCTGAATTCGCGCGCTGTCTGGAGCCACTGCTGCTGCTGGGGCCACGTCGGGTGGCAGCTGCT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GCAAGTGGTGCTAACACGCTGGCAGGGGGCTTAGGCCCCAAGGCGCTGACGGGGCCCCACTGCCCCTCCCCAGT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AGGAAAGATGTCGGGGTCACCCGTCCAAAAGCCCACGCTGCACCGGTCCATCAGCACCAAGGTGCTGCTGGCGG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  AGGGCGAGAACACGCCCTTCGCAGAGCACTGCCGCCACTATGAGGACTCCTACCGGCACCTGCAGGCAGAGATG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CAGAGCCTAAAGGACCAGGTACAGGAGCTGCACCGAGACCTCACCAAGCACCACTCGCTCATCAAGGCGGAGAT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CATGGGAGACGTCCTGCACAAGTCCCTGCAACTGGACGTGCAGATCGCCTCGGAGCACGCCTCCTTAGAGGGCA  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TGAGGGTCGTCTTCCAGGAGGTAGCCCTCCCAAGGACTCTAACTCCAGCCCCACCTGTCAGGGGATACCTGGGC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TACCCTAAGACACTTTTCTCTTTCAGATTTGGGAGGAAGCCTATCAGCGAGTGGCTAATGAGCAGGAGATTTAT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GAAGGTTCCAGACAGTTGGCTGCCGAGTGAACCCTCTGTCCCTGAGCTAACCCACATACTAGCAGAGGAGGAAG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TCAGAGTCGGCCACTAACCAGATGCAAATCCCCACACTCTTCCCCTTAGCGCTTGACCGTGCCTCCCAGCTGCT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  AACTGGCCTCAAATGATGCATGTGAGCCCAGCTCCATGACCTTCTCCAGCTGAGGCAGGAGAATGCCTACCTGA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  CCACCATCACCAAGCAGATCACGCCCTACGTCCGCTCCATTGCCAAGGTGAAGGAGCGGCTGGAGCCCAGGTTT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  CAGGCACCCGTGGATGAGCAGTCAGAGAGTCTACAGAACACGCACGACGACAGCAGGAACAACGCGGCCTCAGC  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CAGGAATAATCCAGGAAGTGTCCCGGAAAAGAGAGAGAAGACATCAGAGCCTAAAGGAAACAGCTGGGCTCCGA  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  ACGGCCTCTCAGAAGAGCCTCTACTGAAAAATATGGATCATCACAGATCCAAACAGAAAAATGGGGGCGATGTC  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  CCCACATGGAGGGAACACCCGACTTAGCAAATGGGACCGGTCCCCAGGGTCAGGCTCTTAGAGCAGGCACAAGA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  CTGGGACACTGGACAGAAGGTTGTTCCCATGATGGTTTTTTTTATTTTTTATTTTTGAGATGGAGTTTCGCTCT  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  GTTGCCCAGGCTGGAGTGTAATGGTGCAATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTC  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  CTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCCTGACACCACGCCCCGCTAATTTTTTGTATTTTTAGT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  AGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACGCCAGACCTCAGGTGATCCACCTGCCTCAGCCT  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  CCCAAAGTGCTGAGATTACAGGGGTGAGTCACCGCGCCTGGCCAATGTTGTTGTTGTTTTTAAGACAGAATTTC  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  ACTCTTTGTTGCCCAGGCTGGAGTGCAATGGCGCAATCTCTGGCTCACCGCAACCTCCGCCTCCCAGGTTCAAG  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  CGATTCTCCTACCTCAGCCCCCAGAGTAGCTGGGATTACAGGCATGTACCATCACACCCGGCTAATTTTTTGTA  2886

Query    1  ------------ATGGGGTTTCTCCATGTCGGTCAGGCTGGTCTGGAACTCCTGACCTCAGGTGATCCGCCCAC  62
                        |.|||||||||||||||.|||||||||||.||.|||||||..||||||||||||||||||||
Sbjct 2887  TTTTAAGTAGAGAGGGGGTTTCTCCATGTTGGTCAGGCTGGCCTCGAACTCCCAACCTCAGGTGATCCGCCCAC  2960

Query   63  CTCAGCCTCC----------------------------------------------------------------  72
            |||.||||||                                                                
Sbjct 2961  CTCGGCCTCCCAAAATGCTGGGATTACAGGGGTAAGCCACTGTGCCCGGCCGGTTATTTCTTTAAAAGGTAATC  3034

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3035  ATTTGTCAAGAGTAAAACCCAGAAGCTCTGACAGGCCATAATTTCAGATCCTTTGGCTTGGGCAGTTTTGATTT  3108

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3109  TCCCCGTGTTTGCATGGCATGAAGTCTTCGTCCTTGTCACAGTAGCTTGGGATGACTCCCAGTCCACATGGAAA  3182

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3183  ACATCAGGGAGTGACAATCCAGCAAGAAATCCCTCGCTAGTTCCACACCTACGCACCGAGCGTCGGTGTGCCAG  3256

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3257  GCCCTGTGCTGGGCAGAGTGTGGTATGTCAGGGTGTGCCGGTTTTAGGTAACAAGACTCCACCACTGAGTGGCA  3330

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3331  CCTGCCCTATTGCAAAGGAATCCAGTTCCTCCGGAATAACAGTCCCACTGTTAACCTGGTGCTACTGGGAAGTT  3404

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3405  CCACACAGTAATCTGAGCAGTGACTCATGGAAGGATGAGGAACGTTTGCTCCAGCTTCTCTCCCTTTCCAGCAA  3478

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3479  GGGCAGAGCTCCTAAAGCCAGGGGTTAGCACCTGGCCAGCTTATGTGGCAGATGGTCTCAGTTACAACTTCGCT  3552

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3553  GCTTTCCCAAACTCCTGCAGCCCTCCTGAGTCCGACTTCCGTTGATAGCAAGGCACTGGGTGGCAGCAACCTTT  3626

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3627  TTTCTAGTAGTTTTTTCCCAGCAGTTTTCCATTTCTCCACAGTATCCTTTTCATTTAGAGGAGCTTAATAAATG  3700

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3701  CTTTTTAAAAAGTAACCCACGTGACGTAAAATTTTACAAGTTTTTGTGGCAAAATGATGCCCAGATAGTCACAT  3774

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3775  TTAAGCAAATATTCAGCTTGATTCAGTGATTAACAGCAAATGGGTCTACGTGCTAACATGGCAGCACATTCAAC  3848

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3849  ACATAACACATCACTCACATTGACGTCCACTGTCCCTGCACCTGCTACTTCAGGGGCACTGAGGCTCCTGTTCC  3922

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3923  AAGGCCTTACAAACCTATGTGGTGGCCTGCAGGGCAAAAGGAATTATCATTACAACTGGTTAGAGGTAGGAATT  3996

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3997  CAGAAAGAAATTGAGGAGGCCAAACACACGTCGTTTGAGGCTAAAGGCTTAAGACGCTTCTTACCCAAGAGTGA  4070

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4071  CCTCAGAGTTTCACATCCCAGACAATCACACTGTGGTTGAGTGAAATCAAGTGCAGTTTTATTTAAGAACTGGA  4144

Query   73  --------------------------------------------------------------  72
                                                                          
Sbjct 4145  AAGAATAATCAGTATCTGTGAAAGAAAATCCAATTTAGAATATTTAAATAAACATTTATGTA  4206

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.