Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_10261
Subject:
XR_001737364.2
Aligned Length:
4366
Identities:
65
Gaps:
4294

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACTGCTGGTTTGCCCTCCCCCTGGTGTTGGCCCGGCTGACTCGGGGTAGGGGAGGTCGGGGAGGGGGCGATAAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ATGGCGCAGGGGGCGGAGTGAGGCGCAGTCGTTCGCCCAGGCTTTGGCCCGGCTTCCGGAGGAAGGTGGGAGTC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AATCATTTTGACAAGTCTCCTGAAAGGAACAGCTAGCAGGAACTGAAACCTTTTTCCATTTGGTCTCGTGGCAA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGGCAGAGATTGCTCCAGCAGCTCCACACAAAATGATGTGCTCACGGGTGCCCTCTGAACAGTCTTCTGGTACC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TCTCTCTTGCCTAAAGACGGTGCCCCATTTTCTTGGGATTCCTTGGATGAGGATGGATTGGATGACTCCTTGCT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GGAGCTGTCAGAGGGAGAAGAAGATGATGGTGATGTAAATTACACAGAGGAAGAGATTGATGCACTGTTGAAGG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AAGATGACCCATCATATGAGCAGTCTTCTGGGGAAGATGATGGTGGGCATGTTGAGAAGGGAGAAAGAGGGAGT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CAAATTCTACTTGATACTCCCCGAGAGAAAAATTCATCGTACAGCCTGGGACCAGTAGCTGAGACTCCTGACCT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CTTCAAACTACCTCAGCTAAGTACATCAAGTGGTCATGGACCAGCTCATACTAAACCATTAAACAGACGCTCTG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TACTAGAAAAGAATCTTATAAAAGTAACTGTTGCACCATTTAATCCAACAGTTTGTGATGCTCTGCTTGATAAG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GACGAGACTGATTCGTCCAAAGATACTGAAAAACTCTCTTCCCTTGGAGAAGAGATGAGAGAAGATGGTCTTAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CCCAAATGAAAGCAAACTTTGTACTGAATCTGAAGGGATCAGCCCCAATAACTCTGCCTGGAATGGGCCCCAGC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TCTCTTCTTCAAACAATAACTTTCAACAGACTGTCTCTGATAAAAATATGCCTGACAGTGAGAACCCTACGTCT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GTATTCTCTCGGATCTCAGACCATTCAGAGACTCCTAATATGGAGTTATCCTGCAGAAATGGTGGTTCACACAA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GTCAAGTTGTGAAATGAGATCTCTGGTTGTTTCCACCTCATCAAACAAACAGGATGTTCTTAACAAGGATTCTG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GGAAGATGAAAGGCCATGAGAGAAGACTAGGCAAAGTCATTCCTGTTCTACAAACTAAGACCAGGACTAATGTT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  CCGACGTTTTCACAGTCAAATCTAGAACAGCAGAAGCAGCTTTATCTCAGGAGTGTCATTGCTCATATAGAAGA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CCCAGAGGACACTAACCAAGCCAAAAAATACTGGAAACAGCTTTGATAAAATGTTGATAAATGAAGGTATCTCG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GGGGAGCTTTGTGCCTTGATGGATCAAGTTCATCATATGCAGCACTCAAAATGGCAGCATCCTTCGGACCTCAC  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CACGCGAAACTACGCCCGCCGACAGAAACATCTGCAAAGATACAGTCTGACTCAGTGGGTTGACAGGAACATGC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GAAGCCACCATCGGTTCCAGCGTCTCCCAGACTTCTCGTACAGTTAATTTGTGTCATCCCATCAGCAATGAAGG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TCCCTATCCAGGGTCCTGCTTGGAGCAGCATTTCATGTTCTTTTGCTGTTTTGTGCTTTGCCGATTTTGGATTT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TATTTTTCACAAAATTTTTATTTAAAAAACTCGTCACCTTTTGGAAATGCCCATTGCCGACTTGAATTTTTTTG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TATGAAGTCCCTCCTGATTTTGTGTGTGTGTGTCTGTGTTTAAGCAAGCGTTCGGTTGGTATAGTTTTTTTTTG  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TTTTTTTAATTTAAATTGAAGGTAGCTGCCTCCTGAAAGCCAGCATTAAGCCAGAACACCCAGGTTCAAGCAAA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  AGACCCACCTCTCTGCAGAGGCAAAGTCTACTTTCTGGTACCTCAAAGAAATCATTGTTCAATCTTCCATAAGG  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  AAGAGATTCTTTACCAGGCTGTGAGCCAGTGTTAGATAACTTGTGAATGGATATAAGTTACTTTTAACAACCCC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TCTTACTTTTTTATTTGAATCCTCTGAATACCTGTCAGTATTTTAAAGTTGGCAATCCAGGACATTATAAGTAG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GATGGAGCAGGAGAAGAATCCTATTGAAAGGACAAATTAAAATAGTAAATCCTCTCCTCTCCCTTCTGTAGGTA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CTAGCTGCCTTGATTTTTTTTTGTGGGTGGGGGGGATTTTTTCATTCCTTATTGAACTTATTTTGCACAATAGT  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  GTTTACAAATCTTATACATCTTACTTTGACAGAAGACTTATAATACCTTGTGGTCTTGAGACTGGTTGTCTCCT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  TTGCCTTTCTTCAAGGATTTTCCTTTTTCTTTTTACCCCCCAGTGACCACTCTGCTCTTTAGGATTCTAGTGGC  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  AGTATTCTTGTAACCTGTTAGACGTGGATATACCTCTTCAGGATGGCCTCCTTGCTGTCTTTATTGAAGAGCTG  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  CCCACCCAGAGTCTTGACTCTAGGGCAGGCTAGTGCTATTGTGGTGTCAGTTGATATTTAGTTTCATTTGCTGA  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  ACCCCAAATTTGAGTGTTAGTTAGGGAGCCTCCATTCTGTGGGAGAGTGTGGAAAGGCACTCTTTTTTCTCCAT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  ATTAGTTAACAAGAGGTGTCTTTAGGCCCTGGATGTTACCATCTCATTTGGTCAAGCCCCTGATACCTAGTTTC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  ACATGGATGCTAACGTGGATGTAATATAGTTGTGACAGCCTATGCACAAAAGCATTACCTGATCTTAAGGTTTG  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  GTATTCTAACCAAAGTTGACAGACTGTGCGTCTGTCTTAATGGATGTCTTAGGAGTTGGTTATTCTCTCTTTTT  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  TTTTTGAGACGGAGTTTCGCTGTTGTTGCCCAGGCTGGAGTGCAATGGCGTATCTCCACTCACCACAACCTCCG  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  CCTCCTGGGTTCAAGGGATTCTCCTGTCTTAGCCTCCTGAGTAGCTGTGATTACAGGCATGCGCCACCATGCCT  2960

Query    1  --------------------------ATGGGGTTTCTCCATGTCGGTCAGGCTGGTCTGGAACTCCTGACCTCA  48
                                      |..||.|||||||||||.||||||||||||||.|||||||||||||||
Sbjct 2961  GGCTAATTTCATATTTTTTAGTAGAGACAGGATTTCTCCATGTTGGTCAGGCTGGTCTTGAACTCCTGACCTCA  3034

Query   49  GGTGATCCGCCCACCTCAGCCTCC--------------------------------------------------  72
            |||||||.|||||||||.||||||                                                  
Sbjct 3035  GGTGATCTGCCCACCTCGGCCTCCTAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCTGGCCGGTTATTCT  3108

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3109  CTCTTTACAGATAGCTATAGACATCATTTTAGGAAGTGTTGCAGTCTGGCATTTGTGCTATTGTTCATTCTCTG  3182

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3183  TGAAGGCTGTTCATAGTTGCTATAGCCTGTGTTTAGTTTTGTGATTTCATCAATCCCATCTTTCTGTGTGAGTA  3256

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3257  ATGCATTCTAAACATCCTACCCCACTTTAGAAACGGACGTGGGGAACGCTTGGTCATTTAAGCCAACAATAAAT  3330

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3331  TTAGGTGAATGTCCCTAAGTGTTTACTGTTTTTATCCAGTCAAGGATTTGCTTTTCCTTGAACATTTGTTTTAA  3404

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3405  ATTCTGGGGCCAAAATGCAAAGGAGAAGTTCTATTCAAAGGCAGTAGTTGAAATCTATTATTTTAGTTAGCCTA  3478

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3479  CTTGGCATTTACTACATCGGTCACTTCTCCAGGCTGCCCTAAATTAGGTTGATGGAGTGAGACATGCCAAACAT  3552

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3553  CCACCTTTGGGACCATAGCATAGTTAAAATTAAATGTAGTTGGAATAGCTAGCATTGCAGCTACAGTAGGGAAC  3626

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3627  TGTAGTCTAGTTCCCTACAGAAAACCCAAGGAGTGAAGGGACAGGATTTTGCCTAGGCAAAAATCTAAGACTCG  3700

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3701  TGCCCTCCTGGTACATGGGGTTTTAAGACTGAATGTGTAATAGGAGCACTGCCTTTGCCAAATCAAATGAGTGA  3774

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3775  CAGGTTAACTAGAAAATGTGACAATCACATTTCCTCTTAGCTCAAATAATTCTGTTTTTCCAAAGCTTTAGCAG  3848

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3849  CTTAATTAAATCTGTTGGACTGGGGGAGGAGAGAGCTGTTCTCTAGTGGTTAACATGGTATTCTTTAAGAAGAA  3922

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3923  AAAACAAAGCCAAAGAAAACTCATTATCTGGCATGTTCGCCTTAAAGATGGTACTGGGTAGAATCTGGAGTTTT  3996

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3997  CATCTCTTTTCAAAGCTGCATATCTCTTATATTTGGTATTGGCCTCTAAGTCTAATATTGCAGTTGGAATTCTT  4070

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4071  GCTGTATTATTTTTTAAGCAAGTGTTAGGTGCATTTAACTGCTTTCTTCATCCATGACGACATTCCCACCATGG  4144

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4145  GGGTCTTGACAAAGCAGAGTAAAAATATGCTGTTTACATTGTTTACTTACAAGTAAGGAGCCTGAAATAACCTG  4218

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4219  TAGTTTCGAATGCAGGCCCTGATTTACTGGCGTTGTCAGTTTCAATTATGAAACTGAAGTTTGGTGCCTCCTCT  4292

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4293  TTATCATGTTTTTTCCCTTGTAGCAGTTGTGTTTAATGTCATTAAAAAGAAATAAAAGTTCTTTGTCAGTGACA  4366

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