Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_10261
- Subject:
- XR_001737370.1
- Aligned Length:
- 5138
- Identities:
- 64
- Gaps:
- 5066
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTTCCCGCGACCCCAACGTCCCAGAGGCGGGGCCGGAGTCGGCGGTGGCGCTCCTTGGAGCCGGCTCCCGCTC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTACCCTGCAAACAGACCTCAGCTCCGCGGAAGTTGCGGATACTGAGGATTTGGAATTAAAGAAATCATTCACC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGACATCATGGAGCCTATATATCCTTTTGCACGGCCCCAGATGAATACCAGGTTTCCTTCAAGCAGGATGGTAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTTTCCACTTTCCTCCATCAAAATGTGCACTTTGGAACCCAACGCCAACTGGAGATTTCATCTACTTACATCTC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGTTACTACAGAAATCCAAAGCTTGTGGTGACTGAGAAGACCATCCGACTTGCTTATCGTCATGCTAAGCAGAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TAAAAAAAATTCGTCATGCTTTTTACTTGGTTCTCTGACAGCAGACGAAGATGAAGAAGGTGTAACATTGACAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TAGATCGCTTTGATCCTGGTCGAGAAGTACCTGAATGCCTAGAAATAACCCCTACTGCTTCTCTTCCTGGGGAC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TTTTTGATTCCATGCAAAGTTCATACTCAAGAACTTTGTTCAAGAGAAATGATAGTTCACAGTGTAGATGACTT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CAGTTCAGCTTTAAAGGCTCTACAGTGCCATATATGTAGCAAAGATTCCTTGGACTGTGGTAAGCTGCTTTCCC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TAAGAGTTCATATCACTTCCAGGGAGAGTTTGGACAGTGTGGAATTTGACTTGCATTGGGCAGCAGTAACTCTA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GCAAATAACTTTAAATGCACACCTGTGAAGCCCATCCCCATTATTCCAACAGCTCTGGCAAGAAACTTGAGCAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TAATCTGAATATTTCTCAAGTTCAAGGGACTTATAAATATGGATATCTTACCATGGATGAAACACGCAAATTGT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TACTTTTGTTGGAATCTGATCCCAAGGTTTATTCTCTACCATTGGTGGGAATTTGGCTGTCTGGAATTACACAT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ATCTATAGTCCTCAGGTATGGGCTTGCTGTTTGCGATACATATTCAATTCTTCTGTTCAAGAAAGGGTTTTTTC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AGAATCTGGAAATTTCATCATAGTTCTCTATTCTATGACACATAAGGAACCTGAGTTTTATGAATGCTTCCCTT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GTGATGGCAAGATACCTGACTTTCGGTTTCAGTTGCTAACCAGTAAGGAAACATTACATCTTTTCAAAAATGTT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GAACCTCCTGACAAAAATCCAATCCGTTGTGAACTGAGCGCTGAAAGCCAAAATGCAGAAACAGAGTTTTTCAG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TAAGGCTTCCAAGAATTTTTCAATTAAGAGGTCTTCCCAAAAGTTATCTTCTGGGAAGATGCCAATACATGATC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 ACGACTCTGGTGTTGAAGATGAAGATTTTTCTCCAAGACCAATTCCTAGTCCTCATCCAGTGAGTCAGAAGATT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TCTAAGATCCAACCATCAGTTCCTGAACTTTCACTTGTGTTGGATGGCAATTTCATAGAATCAAACCCTCTGCC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TACTCCATTGGAAATGGTGAATAATGAAAATCCTCCTTTGATTAACCACTTGGAACACTTGAAGCCATTGCAAC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CCCAGCTTTATGATGAGAAACACAGTCCAGAAGTTGAAGCTGGAGAGCCTTCCTTGAGAGGAATACCAAATCAG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TTAAACCAGGATAAACCAGCTCTTTTGAGACACTGCAAAGTAAGACAGCCACCTGCCTATAAGAAAGGGAACCC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CCATACCAGGAACAGTATTAAACCATCTTCTCATAATGGGCCATCTCATGATATATTTGAAAAGCTCCAAACAG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TTTCTGCTGGAAATGTACAAAACGAAGAGTATCCTATAAGACCCTCCACACTTAATTCTAGGCAGTCTTCTCTT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GCCCCGCAGTCCCAACCACACGATTTTGTTTTTTCACCCCATAATTCAGGAAGACCAATGGAACTTCAGATACC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TACTCCCCCACTGCCATCTTACTGTTCCACAAACGTTTGCAGGTGTTGTCAGCATCATAGTCATATTCAATATA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GTCCGCTAAATTCTTGGCAAGGAGCAAACACAGTTGGATCCATTCAAGATGTCCAGTCTGAAGCCCTTCAAAAG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CATTCATTATTTCACCCAAGTGGATGTCCAGCCCTGTACTGTAATGCATTCTGTTCTTCAAGTAGTCCTATAGC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CTTGAGACCTCAGGGAGATATGGGCAGTTGTTCTCCCCACAGCAATATTGAACCATCGCCTGTGGCAAGACCGC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CTTCACATATGGACTTATGTAACCCACAGCCTTGCACAGTGTGCATGCACACACCCAAGACTGAGTCAGATAAT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GGAATGATGGGACTATCTCCAGATGCATATCGGTTCCTCACAGAACAAGACAGACAGCTAAGACTACTTCAGGC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ACAGATTCAGCGTTTGTTGGAAGCACAGTCTCTGATGCCCTGTTCCCCTAAGACAACTGCTGTTGAAGACACAG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TGCAAGCTGGAAGACAAATGGAGTTGGTTTCTGTGGAAGCACAGTCTTCCCCTGGCTTGCACATGAGAAAAGGT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GTAAGCATTGCTGTGAGCACAGGTGCTAGCTTGTTTTGGAATGCAGCAGGTGAGGATCAAGAGCCTGACTCTCA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AATGAAGCAAGATGATACCAAAATTTCCAGTGAGGACATGAATTTTTCTGTCGATATTAATAATGAAGTCACAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GTCTTCCAGGTAGTGCATCTTCATTAAAAGCAGTTGATATTCCCAGTTTTGAAGAGAGCAACATTGCTGTGGAA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GAAGAATTTAACCAGCCACTTTCTGTATCCAACTCTTCTCTAGTTGTGAGAAAAGAACCTGATGTACCTGTGTT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CTTTCCAAGTGGCCAGCTGGCAGAAAGTGTAAGCATGTGTTTACAGACTGGACCAACAGGGGGTGCCAGTAACA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 ATTCTGAAACATCAGAGGAACCAAAAATTGAGCATGTAATGCAACCCTTGCTTCATCAACCATCAGATAACCAG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AAAATTTACCAGGATTTATTGACAGAGTCTCACTCTGTCACCCAGGCTGGAGTACAGTGGCGCCATCTCAGCTC 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TCTGCAACCTGGGCCTTCTGGGTTCAAGTGATTCTCATGCCTCAGCCTCCCAAATAGCCGGGACCACAGGGTCA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 AGTAAACCACCTATTAAATAGTTCCTCCAAGGAAACTGAGCAGCCGTCTACCAAAGCAGTAATTATCAGTCATG 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 AATGCACCAGAACCCAAAACGTTTACCATACAAAGAAAAAAACACATCATTCAAGACTGGTGGACAAAGATTGT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 GTCCTTAATGCAACTCTTAAGCAACTAAGAAGCCTTGGAGTAAAAATTGATTCTCCCACTAAAGTGAAGAAAAA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TGCACATAACGTGGATCACGCCAGTGTGTTGGCATGCATCAGCCCAGAAGCAGTGATCTCTGGATTAAACTGCA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 TGTCATTTGCTAATGTTGGCATGAGCGGCTTAAGCCCCAATGGTGTGGATTTGAGCATGGAGGCAAATGCTATA 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 GCTCTGAAATATTTAAATGAAAATCAGCTGTCACAACTGTCTGTCACTCGATCGAACCAAAATAATTGTGACCC 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 ATTCAGCCTTCTCCATATTAATACAGACAGAAGCACAGTGGGGCTTAGTTTAATTTCACCAAACAACATGTCAT 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 TTGCAACCAAAAAATATATGAAGAGATATGGACTCCTACAAAGCAGTGACAATAGTGAAGATGAAGAGGAACCT 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 CCCGACAATGCAGATAGCAAGAGTGAATATTTATTGAATCAGAACCTTAGGTCCATACCTGAACAGCTTGGTGG 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 TCAGAAAGAGCCTTCTAAGAATGACCATGAAATAATTAATTGTTCTAACTGTGAATCTGTGGGGACCAACGCAG 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 ATACGCCAGTATTGAGAAATATTACAAATGAAGTTTTGCAGACAAAAGCAAAACAGCAGTTGACTGAAAAGCCA 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 GCTTTCTTAGTAAAGAACCTTAAACCAAGTCCTGCAGTGAACCTTCGAACCGGGAAAGCAGAGTTCACTCAACA 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 TCCTGAGAAAGAAAATGAAGGGGACATTACAATTTTTCCTGAAAGTTTGCAACCTTCTGAAACGCTAAAGCAGA 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 TGAATAGCATGAATTCAGTAGGCACCTTCTTAGATGTAAAACGTCTCAGACAGTTACCAAAATTATTTTAACCT 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 TTTAACTCCCTGCCCTTTTAATACAGGGACAGGGTGTCTCCTGAAGATACTTAGGGAAAACAGGAGCCTACCAC 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 AAGGCTCCTGATCATTCTGGAGTCACTGTTTCTTGGTAGCAGCCAATTGGGAAGAGTGACTTCTGTGAGATGGC 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 TGGCTGGTGATAGGACTAAGTTCTCATTGTTCAAATAGAGCTGTTCAACATCACTGAAACCTTTAAGAAAAGCC 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 CTGAGATCAGTTATTCCTACAAGTTTAAGTAGTAGACAGATACTATCCAGCTCTAAGTCTCAACTGCTCTTTTA 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 TACTGTACTTTTTTTTTTGAGACGGAGTTTTGCTCTTGTAGCCCAGGCTGGAGTGCAATGGCAGGATCTCAGAT 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 CACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTTTCCTGCTTCATCTTCCCAGGTAGCTGGGATTACAGGCAT 4588
Query 1 -----------------------------------ATGG---GGTTTCTCCATGTCGGTCAGGCTGGTCTGGAA 36
|..| |||||||||||||.||||||||||||||..||
Sbjct 4589 GTGCCACAACGCCTGGCTAATTTTGTATTTTTAGTAGAGACTGGTTTCTCCATGTTGGTCAGGCTGGTCTCAAA 4662
Query 37 CTCCTGACCTCAGGTGATCCGCCCACCTCAGCCTCC-------------------------------------- 72
||||.|||||||||||||||||||.||||.||||||
Sbjct 4663 CTCCCGACCTCAGGTGATCCGCCCGCCTCGGCCTCCTAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCA 4736
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4737 GCTATACTGTATATTTTAAGAAGTTCCAGCATGTTGCATCTCTGCATTTATCCTATATCATTAAAAGAACATAA 4810
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4811 GTTATCATGGTGTTGGGTAAATTAGCGAAATCAACCCTTCCTAAGTTTAAGGGAAAAGTTATTTTTAAAAACAA 4884
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4885 CTTAATAAAAACTTACACTCTTTTATACAAGAGTGTATTTCCCCTTAATTAGGATGCATGTTGATTAAACTCGA 4958
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4959 GATACAGCTTTTTGCAGTATGGTGGGTTGGTTTTGGTGTAACATCTTCAACATGTCACACTGGCTATCAAAGAA 5032
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5033 TAAGAAAATTATTGAGTATGAGTGTGTTTTATAAACTTTCTGAGTTTTTCAGATGTCTTAATATTTTTTAATAG 5106
Query 73 -------------------------------- 72
Sbjct 5107 AACTTAATAAAATGTCTAGATTGACTATTTTC 5138
