Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_10261
Subject:
XR_001738550.1
Aligned Length:
5406
Identities:
63
Gaps:
5334

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGGTGGTCTCGATCTCCTGACCTCTTGAT  74

Query    1  -----------------------------------------------ATGGGGTTTCTCCATGTCGGTCAGGCT  27
                                                           |||.||||||.||||||.|||||||||
Sbjct   75  CCGCCCGCCTTGGCCTCCCAAAGTGAGTTTTTGTATTTTTAATGGAGATGAGGTTTCACCATGTTGGTCAGGCT  148

Query   28  GGTCTGGAACTCCTGACCTCAGGTGATCCGCCCACCTCAGCCTCC-----------------------------  72
            |||||.|.||||||||||||||||||||.|||..||||.||||||                             
Sbjct  149  GGTCTTGCACTCCTGACCTCAGGTGATCTGCCTGCCTCTGCCTCCCAAAATGCTGGCATTACAGGCATGACCCA  222

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct  223  CGATGCTTGGCCTCAATTGTCTTCAAAATCAACAATCCTATATTGAAAAGTGAGGCCAGGCACAGTGGCTCATG  296

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct  297  CCTGTAAACCCAGAACTTTGGGAGGCCAAGGTGGGTAGATCGCTTGAGGTCAGGAGTTCAAGACCAACCTGGCC  370

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct  371  AACATGGTGAAACCCCATTTCTACTAAAAATACAAAATTAGCTGGATGTGGTGGTATGCACCTGTAATCCCTGT  444

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct  445  TACTCTGGAGGCCGAGGCAGGAGAATCACCTGAATCCAGGAGTAGGAGGTTGCCATGAGCTGAGACTGGGCCAC  518

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct  519  TGCACTCCAGCCTGGACAACAAGGTGAGACCCCGTCTCAAGGCAAACAAACAAATAAATAAATAAATAAAGACA  592

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct  593  ATTGAACCTGATTTTTCCCTTAGATTCTCCAGAGAAAGAACTTCTATATGGAAAGAGGCAGATTGCTGGAAGGA  666

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct  667  GTAAATAATTCACAGACAACTCATAAGCCCTGAGCTCTGGTCTGTCTCTGCCAATTAAATGCTGTGGAACTTTT  740

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct  741  GGGTAAGTCATTTAAAATATCTGGGTTTCAGATGATTCAGTTACATATGAGTGGGTCCAACCCTCGAATCTTCT  814

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct  815  CACTTGTCTTAGTGATGATGAGCTAATGATGTCTGGTGGAGCCTCATCTGTTGAGATTTTGGAGGTGTGGGTTA  888

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct  889  AAGTTGTGTCCCTCAAAGCATTTCTTCCTCTCAGGCATACCAGAGGTGAGATTCACAGACCACAAAGATAGTAT  962

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct  963  GAATTTAAACTGCAAATGCAGGAGAAAATGATTCATAGTTAGAATTCTCAGAGTAATATTGGTTTTAAAGACAA  1036

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1037  TGTAACCTAGAGGACAAGATGAGACCAGAAAGCTCTCTTGTCACACCTCTTTGCCAGTGGGTGGATGTTATTCC  1110

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1111  TAATCTACCCTTTTACTGAAGTATAAGCCTTTGAGGGTGCTGATACTAGATAACTTACACTCTAGCTTCCTACT  1184

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1185  ATAGATTCAAGGCTTTATCTCCTGTCCTCACATGGCTGTTAAAATAGTAGCCCCTCAGTTATCAAGTCCAGCAA  1258

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1259  CATTTATCAGGGCAGTCTGAGCTGCATTTCTGTTTCATTTCTGGCTTTGCCCCGAGGGATTTCTCTTACTTTCT  1332

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1333  TGCATGTTCAGTTATATATTTAAAAGCATGTTTATTATATTTTGTCCATCATTTCCAGGTGTTTTTTGATAGGA  1406

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1407  GGGTTCTCAGTTAATTTACTATATTGCCATAAATGGAAGTCAGCCCTCTAAATTCTATGATTCTGTGACTATTA  1480

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1481  ACCTCTTTTCTCCCATTGAGCTAATTTGGATATTTATCTTATTTCATCTTGATTCATTGGGTGTTCTGACTCCA  1554

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1555  TGGTGTGTTGGAAATATCCTCAGTTCTCTTGGAGGAATATTAATAAGAAATTGCATAAGTGAACCAAAAAAACC  1628

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1629  TAAAAGCTAATGGCTGTAACTTTGATATTTACATGTTGGGGCTGACCCTAGCATGGAGATATTCAATTGTCCTC  1702

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1703  CCTCTAATATTTCAGCCTATGCCATGATACAGACCATTAAGGTCACTTGTGTTGCTTTACTCGGCAAGTATAAC  1776

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1777  TTGTGATATACTTGTAATATTGTGAAAGATTAAACTTAAATGGCAATATTAAATGTCAGCAAAAGTTAAATCAG  1850

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1851  TGGTGTACTAAAGAGACTCCAGTTCTATCTAATGCCTAACATAGGGAAGGTCTGACTGCCCTTTGGACTGGATA  1924

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1925  TGATCTTGGGTTTCTTAGACATTGGAGGCTGAGGTACCTTATCTACTGCCTCACAGTTCTGGAGGCTCTACAGC  1998

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 1999  TGCTATTAACATGTCAGTAGGGTTGGTTTCTTCTGAGACCTCTCTCCTGGGCTTGCAGGTGGCCATCTTCTCCC  2072

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2073  TGTGTCCCAACGTGGTCTTCCCTCTTTGTGTGTCTGTGCCCTAATCTTTTTTTCTTATAAGGATACCATTCAGA  2146

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2147  TTGGATTAGGATCCACTCGTATAACCTCATTTTACCTTAGTTATCTAAAGACCCTATTTCCAAATACAGTCATG  2220

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2221  TTTTGAGGTACTGGGTGGTAGGACTTCAATATTTGAATTTGAGGGGACAAAATTCACCCTTCAGGAATGTAAAA  2294

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2295  GGTGGTCTGCTAATAGGCCTATGGATTATCAAGTCATTTTTTTTTTAAAGATAAGTGATTGTATTTCTTTCTAG  2368

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2369  AGCTATTACAGTGGTTCATACTGGCTTAACTTTATTATTCTCTTCCATCAATTTTCTAATTTAATAAAAGTTAA  2442

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2443  AACCTTCTATTATGAAAAATTTCAAACTCTCACAAAAATAGAGTAAATAGTATAATGAATTCAGTGTCCTCACT  2516

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2517  GCCTAGTATTATGGGTTGAATTGTGTTTCCCAAAAATTCATATGATGAAGTCCTAACCCCCAGCACCTCAGAAT  2590

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2591  GTGACTGTATTTGGAGATAGGGTCTTCAGATAATTAAGGTAAAATGAGGTCCATGAGTGGACCTAATCCAACCT  2664

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2665  GACTGGTATTCTTACAAGAAGAGGAGATTAGGACACAGACACACACAGAGAGAAGATCATGTGGGGACATAAGA  2738

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2739  AGATGGCCATCTACAAGCCGAGGAGAGGGGCCTCAGAAGAAACCAATGCTGCTAACATCTTGCTATCAGTTACC  2812

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2813  TAGCCCCCAGAACTGTGAGACAGTACATTCTGTTTTTTAAACCACAGAAGACACGTATTGCATGACTATTTTTT  2886

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2887  TTAAGTCCAGAATAGGCAAATCTGTAGAGATAGAACATAGATAAGTGATTGCATAGGGCTTATAAGTTGGAGGT  2960

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 2961  AATTGGAAAGTGACTGCCAGTGGGTATCAGGTTTCATTTTGGGGTAATGAAAATGTTTGAAAATTGACTGTTGT  3034

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3035  GATGGTTGCCCAACTCTATAAATATACTACAAAACATTGCACTATACAAATTAAATGTGTGCATTGTATGATGT  3108

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3109  GAATTAAATTCCAGTAAGCCTGTTTTTAAAGACTCAAAGAAAATTAAAGAATGACTGAAAACTTTCCAAGTTTG  3182

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3183  ATGAAAATTATAATGCTACAAATCCAAGAATCTCAAAAAACCTTAAGCACAAGAAAGGTTAAGAACATGACCCC  3256

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3257  ACGCCGGGTGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGAGCCACTTGAGGTCA  3330

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3331  GAAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCTGTCTCTACTAAAAATACAAAATTAGCCAGGTGTGGT  3404

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3405  GGCACATGCCTGTAATCCCAGCTACTTGGGAGGCTGCCGCAGGAGAATTGCTTGAACCGGGAGGCAGAGGTTGT  3478

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3479  GGTGAGCCAAGACTGTGCTATTGCACTCCAGCCTGGGTGACAGAGCAAGACTCCAACAAAACAAAAACAAAAAC  3552

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3553  AAAAACAAAAAAAGAAACAAAAACAAAAACACATGACCCCAAAGCGCAACATCATCAAATTGCTTAAAATTAGT  3626

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3627  GATTTGGGTCCTCTGGAATTAAAAGAAAAGAGAGAGAGAAACTAGTGATAAGAAGAAAGCAGTCAGAGGGAGTT  3700

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3701  GGGGAATGACGTTGTTTACGGAAGGATGACAACAGATTTCTTCTCAGAAAAAATGTAAACCAGAAGACAGTGGT  3774

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3775  ACTACATTTTTGAAGTTTAAGTGCTGCTTGACTTATGATGGGGTTATGTTCCAAAAAACTCATCATAAATTGAA  3848

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3849  AATATCATGTCTAAAATACACTTTCAACTTACATTTTTGATTTATGATGTGTTTATCTAGACATAATTCCATCA  3922

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3923  TTAGTCAAGGAATGTACTGAATGTGTTTCACTTTTACACCATCATAAAATTAAAAAGTCGTAAGTCAGGGAAAA  3996

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3997  TCTGTACTGCAAGAAAAACACTGTTAACCTAGATATCTTTGCCTAGTGAAAATATCTTTCAGAAATGAAGATGA  4070

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4071  GATAAAGGCTTTTCATACCAACAAAAGTGGAAAGAATTCATCATAAGAAGACTTGAGTGAGAAGAAATGCTAAG  4144

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4145  AAAGCTCTTCAAGTAGAAGAAAATGATACCAGATGGAAATCTGGATCTCCACAAAGGAACAAAAAGTATTGAGA  4218

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4219  ATGGGAACTATCCTATGTGGTGCTGGGGATGCCAGAGTTGGAATTCAAGACCCAGGGAGAAGGGCTTCAGTCAG  4292

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4293  CACTCCAGTACCTCAGCTGGGAATCCTGGAGGCTATACCCTATGTATGGGGAAAATGAGAGGTAGATGGAAACT  4366

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4367  AAAAAACAAACAAACAAACCAGTCCCTGATTAGTTGTGACTTTATCTGCCTACCAGAAAATAGGACTAGCCCTC  4440

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4441  TCTGGAAGATGATAGCATTATCCAGAACCTCATACACAAAATTTACCCAGGACACTCATGAAGAGGAGGAAGAA  4514

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4515  AAGACAACATAAACAGACATACAGGTCACCTACTTATTGGAGTTAACAGATGGATGTTCAAATCTGTATTATTC  4588

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4589  TTATATTCAAGAGAATGAATGACAAAGAGTAGAATTCCACTGGAGAACTAGTTAACCAAGGCTAGATGGCTTCA  4662

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4663  TTGAAAGACTTTGTCAAGCATGAATAAAGCCACTATAAATATTCTTGCACAAGTCTCTTTGTGAATACATTTTT  4736

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4737  ATTCCTTTAGGTAAACGCCTAGCGGAGGAATTGCTGGGTCATACATAGGGTAGGAGTATTATAACCTTATAAGA  4810

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4811  AACTGTCAAATGGTTTCCAAAATGGTTTCACCCATTTATATTCCCACAGACTTTATTCATAATAACCAATCCTG  4884

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4885  AGGGAAAATCTATAATGTTCGTCAAAAGAAGGAAATCCTGGCTGTGCCTATAATCACAGCATTCTGGGAGGCCA  4958

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4959  AGGCAGGAGGATCACTTGAGCCCGGGAGTTCAAGACCAGCCTGTGCAACATAAAAATGGTAACTCATCAAACCT  5032

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5033  GCAGCAGAAGGCAACTTTTCAACTCTCAGTCAATTTGATCAACATTCAGCATCCATCAAATGAAGGATTGGGAG  5106

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5107  TGATAACCTTAAAAAATCCTGCTAGGCTGCTGGTTATTGATTCTCTGTTCAGCCTGATGGATGAAGATGCAAAG  5180

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5181  GCAACAAGTGAAAGTGCAAACCTGGCTGCCGGCCTCCTTCATACCACGTTAGGTTAGGCAGGACTTGTGTCTGA  5254

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5255  AAAGCACCATTGTTAGTTTTACCAAAAATGCACTGCTGTCATCACGACCAATCAGAATGTCACCCTAGCTGGAG  5328

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5329  ATCTGCTCCTCCTGGCCTTTCCTTGGGATTTTCAGAAAAGCTCAGAAAACAATTTACAATAAAACTTAATTACT  5402

Query   73  ----  72
                
Sbjct 5403  TTTA  5406

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