Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_10261
Subject:
XR_001741287.2
Aligned Length:
5060
Identities:
63
Gaps:
4990

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GACATTACGGCGGAAGGCTCTGGAGGAAGCAGAAGTGAAGGACCTCGCAGTCCTGGGACGGTGGGGCACAGAGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GAGAAAGGGAGCCCCGGGCGCGGCGCGGTGAGGATGCGAGCAGAGGAAGGACACGCGGCGCCGGGTACCTGCCG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGAGCGCCGGATCCAATGGGAGGAGGGCCCGCGCCGCACCTCAACCTGGCAGAGGACGTCACGACGCCAAGGCG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GTCGCCGGGCCAATGGGAGGCCGTCGCGGGCAGGGACGGGGCCGGGAGGAGTCGGGGCTGGGCCGCGCCGAGGC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AGCTGGCTGACTCCAGTTTAGCCGCCGCCGGAGAGGACGGGCGCCGAGCCGGGGCTGCGGACTTCGGCCTGCCC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTCACCTCACTCCCGCTGCTTGCACCTCCCGGATGGTGCTGACTGCTCCCTAAGCGGCGGCGGCGGCGAGTCGT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GAGGACGCGCCGCGGAGGCTGTTCGGGGTCGAGGCTTCCCGTCGCCGGCACTTCCTCTTGCGGCGCCCGTGCGC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GGCCGGCCCGGCAGGCGGGATGGCGGCCGCGGCTCCAGGGAACGGCCGCGCATCGGCGCCCCGGCTGCTTCTGC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TCTTTCTGGTTCCGCTGCTGTGGGCCCCGGCTGCGGTCCGGGCCGGCCCAGATGAAGACCTTAGCCACCGGAAC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  AAAGAACCGCCGGCGCCGGCCCAGCAGCTGCAGCCGCAGCCTGTGGCTGTGCAGGGCCCCGAGCCGGCCCGGGT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CGAGAAAATATTTACACCAGCAGCTCCAGTTCATACCAATAAAGAAGATCCTGCTACCCAAACTAATTTGGGAT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TTATCCATGCATTTGTCGCTGCCATATCAGTTATTATTGTATCTGAATTGGGTGATAAGACATTTTTTATAGCA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GCCATCATGGCAATGCGCTATAACCGCCTGACCGTGCTGGCTGGTGCAATGCTTGCCTTGGGACTAATGACATG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CTTGTCAGTTTTGTTTGGCTATGCCACCACAGTCATCCCCAGGGTCTATACATACTATGTTTCAACTGTATTAT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TTGCCATTTTTGGCATTAGAATGCTTCGGGAAGGCTTAAAGATGAGCCCTGATGAGGGTCAAGAGGAACTGGAA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GAAGTTCAAGCTGAATTAAAGAAGAAAGATGAAGAATTTCAACGAACCAAACTTTTAAATGGACCGGGAGATGT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TGAAACGGGTACAAGCATAACAGTACCTCAGAAAAAGTGGTTGCATTTTATTTCACCCATTTTTGTTCAAGCTC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TTACATTAACATTCTTAGCAGAATGGGGTGATCGCTCTCAACTAACTACAATTGTATTGGCAGCTAGAGAGGTG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AGTGATATTTGAGAGGAGACTGTTTAAAATGAAACGTAATTATTATTACTTTGTTCCAGAAAACACTGGACACA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CTGAAGTGGGCCACAGCATTCCTTCATATGCAAGACTGTTTTACATCTGATAATTCAGCTGCTCTCTAAAATTG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GCCTTCTCCCAGTTCCTGCTACCTGCAGGACCCCTATGGTGTAGCCGTGGGTGGAACTGTGGGGCACTGCCTGT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GCACGGGATTGGCAGTAATTGGAGGAAGAATGATAGCACAGAAAATCTCTGTCAGAACTGTGACAATCATAGGA  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GGCATCGTTTTTTTGGCGTTTGCATTTTCTGCACTATTTATAAGCCCTGATTCTGGTTTTTAACAAGCTGTTTG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TTCATCTATATTTAGTTTAAAATAGGTAGTATTATCTTTCTGTACATAGTGTACATTACAACTAAAAGTGATGG  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  AAAAATACTGTATTTTGTAGCACTGATTTTGTGAGTTTGACCCATTATTATGTCTGAGATATAATCATTGATTC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TATTTGTAACAAGGAGTTTTAAAAGAAACCTGACTTCTAAGTGTGGGTTTTTCTTCTCTCCAACATAATTATGT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TAATATGGTCCTCATTTTTCTTTTGGTGCAGAACCGTTGTGCAGTGGGGTCTACCATGCAATTTTCTTTCAGCA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  CTGACCCCTTTTTAAGGAATACAAATTTTCTCCTTCATCACTTAGGTGTTTTAAGATGTTTACCTTAAAGTTTT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TCTTGGGGAAAGAATGAATTAATTTCTATTTCTTAAAACATTTCCCTGAGCCAGTAAACAGTAGTTTAATCATT  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GGTCTTTTCAAAACTAGGTGTTTAAAAAAAGAGACATATATGATATTGCTGTTATATCAATAACATGGCACAAC  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  AAGAACTGTCTGCCAGGTCATTCTTCCTCTTTTTTTTTTAATTGGGTAGGACACCCAATATAAAAACAGTCAAT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  ATTTGACAATGTGGAATTACCAAATTAAAAGAGAATACTATGAATGTATTCATATTTTTTCTATATTGAATAAA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  CAATGTAACATAGATAACAATATAAATAAAAGTGGTATGACCAGTGCTTGTTTTTCCTTGTGTGTCATATAAAA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TTATCAGTATTGATAGGCCAATTTCTAAAGCTGATGTAAAAACACTAACATATTAAATATTTGAGATATGCCTA  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  AAGTAGCTAAACAGGAGCCAGGCATTGTTCGAAAGCATTGTCACCCTTACAGTTCTGTGAGGTAGTAGGTACTA  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  ATATAAGGTTAAAAAAGAAAAAAACTAACTCACCCAAGGTTACATGGTAGAGTCACACCAGGCGGTTTAATTCC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  AGAGCCTAATGTCATTCATTATGCTAAGACTACCTCATTTTTTCATGGCAACTTCAGTCGTCACCCTCGTTTGA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  GTATATTTTGATTTGACTACTACTTCACCCAAGTAGCATAACAGCTGCTTTCTCTCAGCCTTTTATATTCTAGA  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  ATCATATGCAGTAACATTCCCATTAATAGCCTCACTAAATTGAAGGACAATTCTACAGAAACATCCATGTTATT  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  TGTGTGAGGTATAATAGGAGACCCAGAGCAATTCAGGTTTATGAGCTACTACAAAGGTCCACAATGTAGTCTGC  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  AATTTGAAGAGATTGTGAAAGAACCCAGTTAATCATCCAGCACTGTAGGATGCAGCAATTGTCCTACATGGTAA  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  CTCTGTGAGGAAGATGATAGCTACTACTGTGGAGATCTTAAGAGGAGTTTTCAGCTTAAATGCCAAGTTAGAAG  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  TAGCACATGTTGGTAAAAAAGGTCATATTTGTAGTTTTCTGCTATAGGAAGTATCAAAGGGTAGAAAACAATGT  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  CTGTGGATTAAGATAAACTCTGTGGTTAGACAGTCTATATTGCCTTAGATTGTTTGTTTGTTATAAAGAAAGAG  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  TGAGGAATTCTCACTAGTATTTTTTTTTTTTTTTTTGAGAGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGT  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  GGTGTGATCTTGGCTCACTGCAACCTCCACCGCCCGGGTTCAAGCAGTTCTCCTGCCTCAGCCTCCCGAGTAGC  3404

Query    1  -----------------------------------------------------------ATGGGGTTTCTCCAT  15
                                                                       ||||.|||||.||||
Sbjct 3405  TGGGATTACAGGCGTGCACTACCACGCCTGGCTAATTTTTTGTATTTTTAGTAGAGATGATGGAGTTTCGCCAT  3478

Query   16  GTCGGTCAGGCTGGTCTGGAACTCCTGACCTCAGGTGATCCGCCCACCTCAGCCTCC-----------------  72
            |..||.|||||||||||.|||||||||||||.|  ||||||||||||||||||||||                 
Sbjct 3479  GCTGGCCAGGCTGGTCTCGAACTCCTGACCTTA--TGATCCGCCCACCTCAGCCTCCCAAAGCGCTGGGATTAC  3550

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3551  AGGCGTGAGCCACCATGCTTGGCCTACTAATACGTTTTGTTTGTTTGGAGACAATCTATCTCACTCTGTCACCT  3624

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3625  GGGCTGGAATGCAGTGGCGCAATCTCGGCTCACTGCAACCTCTGCCTCCTGAGTTCAAGCAGTTCTCCTGCCTC  3698

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3699  AGCCTCCCAAGTTGCAGGGATTATAGGTGCCCGCCACCACGCCTGGCTAATTTTTTTGTATTTTCAGTAGAGAC  3772

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3773  AGGGTTTTACCATGTTGGCCAGGCTGGTCTTGAACTCATGACCTTAGGTGATCCACCCACCTCAGCCTCCCAAA  3846

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3847  GTGCTAGGATTACAGGCGTGAGCCACCGCACCCAACCGTTTTTTCTAATAACAACAGAAAAGACAATTCCTCGT  3920

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3921  AGGGAGTAGCTGGCACCATCATCGTGTAACCTCAGTTCAGGTAGCTTGGTCCCATTACTAGCTTCATATGCGAA  3994

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3995  TAAGAACAGCATCGCATTCTGAGGCACCACAATCTTGTAGCAGGACATAATTCCTCTGAGAATTTTTGGTAAGT  4068

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4069  CAGACCTAAGCTATAAGGTAAAAATCGCTACTGCAATAGGCTCCATTGTTGAATAAAAGAAAGGGAAATGTCAT  4142

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4143  TGATAGTGATCTTAAAATATTTAATAGTCTTTCTTTAAAATCCAAAATGTGATTCTTACAAGTTATGTGCCACA  4216

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4217  TGAAGCAGGTGTTATTTTTTGAGAAATGCAGGTGATAACTGAAAAACATAGCACTGAGGTATTTTTTATTTTTA  4290

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4291  AAATTGAAGGAAACAAAGTCTGGATCTAATTATTTTTACATTTACAAAAACTGCTACTGCTTGGCTCTTTTGCT  4364

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4365  ATAAGTTTAGGTTCTGAATACATGACAAGAGTATGGGAAAGAGCAGAATAATAGTACACGCAGTTTTAAAAGCT  4438

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4439  ATGCACATCATAACCTGGAATAATGATTACACAGCAAGAGGCCTGAGTGGAGGTAGGCTAACAACACATTTTGA  4512

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4513  CTTTCTCCTCAAAGGATAGCTTTGAAAAACAAGTGTAACCAATTGTTACACCAAATTAAAATGGCAATATTAAA  4586

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4587  TCGGTAACAAAACGATCCACATTTTATACAATATTGTATTTCCAAACATACATAGGTCATGAAAATCAGAGAAC  4660

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4661  CTAATATAGCACCGTTGAAACCATTCATTATCCTTCATGTGTGTATGCAATTCAGAATTTCGGCAGAAGACAAC  4734

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4735  AAATGGAAAATGCCTTTCGTTTCTATAAATCATTTTGGATTTCAATTAAATCTTTGCCTTAGTAAAGGGTATTC  4808

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4809  TTATCTCAAGATCAATTAGCCGTTTTTAGCTCCACCGTTTTGGAAGTAAAAATGATGAGCTACATCTACTTTTT  4882

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4883  AATTTAAAACCAAGAACCAAGCAGTAAGGACAGCAATGTCAAGAATATCACATTGAGAACCACACAGAACATTA  4956

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4957  TAAAGAATTTGGTGCATGTTTTAACAACTACCAACTGATGTTAACAATGAAAAATTTACAAAGGTAAAACTTTT  5030

Query   73  ----------------------------  72
                                        
Sbjct 5031  TTTTTTTTTTTGCACTGACTGGTTTCAA  5058

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