Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_10261
Subject:
XR_001742760.1
Aligned Length:
5419
Identities:
64
Gaps:
5347

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGTCCTCCCACCTCAGTTTCCCAAGAAGCTGAGACTACAGGTTGCATACCATCATTTTCCTTATCTTTGAGTGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGACAGTTCTGCATAGACTGATATTTGCCCAGTGTAGTAAAACCACACAAGCAGAAAAAGAGGCTCTTGGCAGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGGAGAGTATGGGGGAAATCACAGAAAAGAGGAAGCTCAAGGAAAAGTTCCTAAAAAGCTGTGTATAAAGTCCT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGGCTCCACCCCCAGCTGCTCATGCATGGAGCTGACCCAAAGCAATATACCAAAGGCTCTGAGAACTGGCTGTG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GTGTAGACTACCACCAGAATGACCACCTGGGTGATGCACATGTGAGGCAGATCCAAGTAGCACTGCAAAACCTT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TGGAAACTGAAGTGACACTAAAGCCACAGCTTACTAAAGGTATGTCCAAACTTATGATCTGAACCAACCAGGTT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AATTGGCAGCTAAAACAACAAAGTAAACATTCACCAAAGGACTTTAACAAGACTCAGAGACTTGTAAAATATAT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GTAACATTCAGGAATAATCTAAAATTGCTCAACATATAAGGAACCAGGAAAATCTCACCAACTTGCAAGAAACA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AGCCAGTCCCAAAATGATTCAGATGTTAAACCTATCAGACAGTGACTTCAAAGCAGCTATTACAGCCAAGTTCC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  AGGTATAGCTACTCACAGGTCTGAGGTGGAAGGATCACTTGAGCCCAGGGTGTCAAGGCTGCAGTGATCCTTGA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TCATGCTACTGCACTCCAGCCTGGGCAACACAGTGAGACCCTGTCTCAAAAAAATTAATTAATTGATTGATTAA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TTAAAAAAGGAGTTCAGACTTTAATTTCCAGTTCAGATGGAGTAAGCAGCACATATCACTTTATCTTTCCCAAA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GATTACAACCAAAAACCCTTGAAAGAAAACACAACTAGGAGTCTGAAAAGTACATAATAGCAATAAGAGAGCAG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TAAGAAGAGAGAACACTCTTGAAATGAAAGAAAAATTATCTGCAGAAAAATAGAAGCTACAAGAAAGTGCCATG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GGGAGTGGGGAATGGAGAGTTGTTGAATGGATATGGAGTATCAGTTTTGCAAGGCAAGAAGAGCTCTAGAGACT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GCTTGCGCAACAATGTGAATGTACTTAACACTACTGAACTGTATACCAAAAATGGTTAAGATGGTAAATTTTAT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GTTACATGTATTTTACCAGAATAAAACTAAATTGGTATGTACTTACCTAGAAAGATGTTCATAATATAGTTCTA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  AGTAAAACTAAATTATGTTTCACAGTGAAGGAAGGGAAAGAAGGCAGGAAGGAAGGACAAAGCGGTTATGTACA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AACTGAAAACTACATAATTGAAATTAAAACCTTTGCTGGATGGACTCATTTGCCGAATGGAAATGATAAAATAG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TGATCTTAAAAGGTCAAGATCAAGATATATTATCCCATTTGAAACAGAGAGGAAAAAAGATTGAAAAAAATAAC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  AGACTTGCATACCTGTGGGACAATATCAGAAAGATTAACATTTATGTCTTTGGTGTCCCAGATCAGGAGGAAGA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TACTGCTGCAGATGAATATTGAAAAAAATAAAGGATAGAAACTTTAAAATTTGGCAAAAGACATGAATGTAAAG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  ATTCAGGAAGTTCAGGAAACCCCCCAAACAAGATACACTAAAATCAACAACAACAACAAAAAAACTACATTGAG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  ATGCATCCAAATTTACTTGCTGAAAATTAAAGATTTTTAATTGCTGAAAAATTTTAAAATGTGGGCAGGTGTGA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TGACTCATGCCTGTAATTCCAGTACTTTGGGAGGCCAAGGCGGGCAAATTGCTTGAGCCCAGGAGTTCAAGACC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  AGCCTATGGCAAAGCCCCCATCTCTAAAAAAAAAAAAAAATACAAAAATTAGCCAGGCATGGTGGTGCACACCT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  GTAGTCCTAGCTACCTAGGAGGCTGAGGTGGGAGAATTGCTTGAGCCTGGGAGGTGGAGGTTGCAGTGAGCCGA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GATTGTGCCACTGCACTACAGCCTGGGCGACAGAGTGAGACACTGCCTTAAAAAAAAAAATTGAAAAAGAAAAA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TGACACATTACATATATAAAGGCGAAATGACTAAAATGACTGGATTTCTCATCAGAAATCATGGCGGTCAGAAA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GCAGTAGAACATTTTTTTGATGCTGAAAGTAAAGAAGTGTCAACCCAAAATTCTATATTCTGTAAAATTTTCCT  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CAGGAATGCAGGCAAAATAATTCCTTCCCAGAAGAAGGGAAAATAATGCAGCTGCACTAAAAGAAATGCTAAAG  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GGAATTCTTCAGGTGGAAAGGAAGTAATACCAGAAGGAAACTCAAAACTTCAGGAATGAAAGAAGAGCAACAGA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  AACAGTAAATATATGGATAAATATACTTTTTACTCTTCATAATTTCTTTAAAATATGTATAATGGGTGCAAGCA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  AACACTGTAACATTGATGGTGGGATTTTTGGTGTATGTAGATAATAATACACATGACAACTGCAACATAAAGGG  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TGGAATGTAAAAGGACCTGTATTGTTGAAAGTTCCCCACATTTTATTTGAAATGATAAAATATTCTTAGCTGGT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  TTTAAAAGTTAAATACATATATTGGAATCCTTAATCATTAAGAATATTATTAAAAGTATATAGTTATTTTTGGC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  CAGGCGCAGTGGCTCACACCTGTAATCCTAGCACTTTGGGAGGCCAAGGCAGGTGGATCATGAGTCAAGAGATC  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  GAGACCATCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGAGGTGGTGGTGCG  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  TGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAAGAAAACTGCTTGAACCCAGGAGGCAGAGGTTGCAATGA  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  GCCAAGATCATGCCTTTGCACTCCAGCCTGGTGACGGAGCGAGACTGTCTCAAATACAAAAACAAAACAAAAAA  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  TATATACAGTTATTTTTAAAGCCAAGAGATAGAAAACCAAAAGATATTCAAATAATTCAAAAGAATCCAGGAAA  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  GAGCCAGGCACGGTTGTTCATGTCTGTAATCCCAACAGTTTGAGAGGCCAAGGCAGGCAGATTCTTTGAGCCCA  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  GGACTTAGCAGCCTGGGCAACATGGAAAGACCCCATCTCTCCAAAACAAAATATTAAAAAATTAGCCAGACATG  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  GTGATGTGTGCATGTAGTCCCAGCCACCCAGGAGGCTGAGGCAGGAGGATTGCTTGAGCCTGGGAATCAGAGGT  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  TGCAGTGAACAGAGATCATACCACTGCACTCCAGCATGAGCAACAGAGCAATTCCCTCTCTCAAAAAAAAAAAA  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  AAAATTCAGAAAAGGAGAAAAAGGAATGAAGAAAAAAAGGAGAAAAACAGAAAACAAATAATAGAATGATAGAT  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  CCAACTATATTAACAGTTACATTAAAGGTAAATGTTCTAGAAACACCATTTAAAAGCCAGTTTGTCATTTTGGT  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  TAAGAATACAAGACCCAACTATATGCTATATATTAGAAGTCCACTTTAAATGACGTAAGTATGTAAAAAGTAAA  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  AGGATGGAGAAAGATATACCATGTAAAGATTGGCTGAGCACAGTGGCTCATGCCTGTAATCCCAGCACTTTGAG  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  AGGCTGAGGCGGGCAGATCACCTGAGGTCAGGAGTTCGAGACTGGCCTGGCCAACATGGTGAAACCCTGTCTCT  3700

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3701  ACTAAAAAAAAAAAAAAAGCCAGGTGTGGTGGAGGGTGCCTCCATGAGAGGCTGAGGCAGGAAAATTGCTTGAA  3774

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3775  CCCAGGAGGCTCACTAGCCAAGATCCTGCAACTGCACTCCAGCCTGGGTCACAGAGTGAGACTCCATCTCAAAA  3848

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3849  AAGAAAAGATACACCATGTAATGACTAATCAAAAGGAAGCTGGAATGGGTATATTAATCAGATAAAATAGACTT  3922

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3923  CAGAACAAGGAAAATTAACAAGTTTGTAGAGGTAAATTGCATACTAATAAAGTGGTCACTCAAGACATAATAAT  3996

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3997  TCTGTATGTATGCAGCTAACAACAGAGTGTCAAAATACTGTACATAAAACAAAAACTAATAAAATAGGAGAAAT  4070

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4071  AGATAATTCTGCAATTATAGATGGGAATTTCAGTTTTCCTCTCAGTAATCAATAAAGCAAGTAGACAGAAAATC  4144

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4145  AGCAAGAATGTAGAAGGCTGGAAAACCATTAGCCAAAAAAGAAAATTCCAGGCTCAGATTTAAGGAATAAATAA  4218

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4219  GACCAATTCTATACAATCTCTTACAGAAAATAGAGGAGAAAGAAATAATTTGCAACTCATTTTAAGAGCCAGCA  4292

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4293  TTACCCTAACATTACTAGAGAAAGATATTTCAAAAATAAGATCAATATCTTGAACACAGACGCAAAAATCCCCA  4366

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4367  ACAAGATATTGACAAATTGAATACAGCAATATATAAATAAAATTTTCTTTCAGGAATGCAAGGTTGTTCCCACA  4440

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4441  TTTGAAAATCAATGTAGTCCACCATATTAACAGATTGAAGCATAGAAACATGATTTTATGAATAGATGCAGAAA  4514

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4515  ACCCATTTGACACAATTCAACATCCATTCTTTTTATTTATTTTTTTAAGACAGGGTCTCACTGTAGCTCAGTCT  4588

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4589  GGAGTGCAGTGGTGGCAATCACGGCTCACTGCAGCCTGGACCTCCTGGGCTCAAGCAGCCCTGCCTCAGCCTCC  4662

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4663  TAAGTAGCTAGGACTACAAGTGCCCACCACCATGTTTGGCCAATTTTATAACTGTTTATAGAGACAGGGTCTCA  4736

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4737  CTGTGTTGCCCAGGTTGATCTTGAACTCCTGGGCTCAAGCAATCCTCCCGCTTCAGCCTCCCAAAGTTCTGGGA  4810

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4811  TCACAGGCATGAGCCATTGTGCCCAACCTCTACATTCTTTATTGATAAAACTCAATGGAATATGAATACAAGAG  4884

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4885  AACTTCCTTAATTTAATAAATTGAACTATAAAAAAAACTTGGCAGCTAACATAATTCTTTTTTTTCTTTTTTGA  4958

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4959  GATGGAGTTTCACTCTTACTGCCCAGGCTGGAATGCAATGGTGCGATCTCAGCTCACCGCAACCTCCGCCTTCC  5032

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 5033  GGCTTCAAGCGATTTTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGACATGCGCCACCATGCCTGGTTAA  5106

Query    1  -------------------ATGGGGTTTCTCCATGTCGGTCAGGCTGGTCTGGAACTCCTGACCTCAGGTGATC  55
                               |..||||||||||||||.|||||||||.||||.||||||||||||||||||||||
Sbjct 5107  TTTTGTATTTTTAGTAGAGACAGGGTTTCTCCATGTTGGTCAGGCTAGTCTTGAACTCCTGACCTCAGGTGATC  5180

Query   56  CGCCCACCTCAGCCTCC---------------------------------------------------------  72
            .||||||||..||||||                                                         
Sbjct 5181  TGCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCTAGCCGCTAACATCATTCTTA  5254

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5255  ATGGTGAAGGGCTGATTAATTTGCCTAAGATTGGGAAAAAGGCAAAAATGTTCTTAGCATTTCTGTTTAACATC  5328

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5329  GTGCTAAAAGTCCTGGCCACTGTGATGAGGCAAGAAACAGAAGTAAGAGGCATACAGATTGGAGAAAATAAAAC  5402

Query   73  -----------------  72
                             
Sbjct 5403  AGAACTTTCTCTATTCA  5419

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