Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_10261
- Subject:
- XR_001747390.2
- Aligned Length:
- 5707
- Identities:
- 64
- Gaps:
- 5635
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TACCAAAGTACAACTTCCAATTTTTATTTCAGAAGGAAACCATCCTTGAGAGATGAGAAAATAACTTACTTTAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCTTTATTCATTTTTGTATTTGGCTGCCATAAAATATCTTTTACTAAGTAGCTTTAGGGTTTTTTTTTTAATCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AATCCTGATTAAATTAAAAGAAAAACCTGGTAAGTTAATTGTAAGCTTTCCCATAAAAGAGAGAAGCACAAAAT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCCATGGAATATATCCAAGAAACATAACATAAACATGAGACTTACAATGCACAATTTAAAATTTCATATGTTGT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CAAATGATAAATGTCTGTTCCAGCTATGAATACTTTAACTTCAAAAATCTTTCATAGCCTTAAAAAAGAACTCT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CACAGAAACAGAAGCTGGAATGTTATTTGTGAACTAGGCCTTGCACCTTGTCAATATTTTTAGTTCTTAAATTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTGGAATGTTCTAAAGACATAAAACATCTACTTCATTTTGAAATTTTGATTTTAACATTTCACTAACAACACTG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GGAAAGGATCATCTTAACTAAAGGTGTCAAGACTAACGTTTGAGCTTAGCCGTTGAACTTTCTCTTAGGGGAAA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CAGTTTAATCCCCAAGTACTATGAGATAGGCGTTTTAAGGCAACTTTTTAAAAAGGAAAATAAATCTGCTTTTT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GCCGTCTAGGAAAGATACATTTTTCCTTGTGGAAATCTGCAGTCTGAAAAGACAGATATGAAAAGCATGAACTG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TTGAAAATAACCTAAATGTTCTTTGAAAATTTAAAGGCCAGCTTATCCTGCAATGGTGATAGAATAGTCGGCTT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ACAACACGCAAAGCCGAGCCGCGGGTGGGCAGGCGCCGCCCGTGGCTCGCGGAGTGGATGCACTCGAGGGCGCG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GCCGCTGCGCTTGGGGAACTTTCAGGGCGCCAAGTACGGGTAGCGCTTCTGATGGATTCCCGGGTCTGGGAGGA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TCCGATTATCCCGGGGCCGGGTGACACGCACAAAGCTGAGGTTAGAGTTGGCCAGGAAGGGAGGACCTGGTGAG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CCGGTGGAACAAAAGCGGGAAGGCCTTTCCTTCTAGGAGCAAAACCAGCGACGCGTCCCGGACGCCCGGGGACC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CCTGTGGGTCTCGGTTTCCTTCGCTGTGACCCTGACATGTTTCCCTCCACCGGCCCGAGGAAACCGTCGCTTCC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AGCCTCCAGGTGTTATCTTAGGAGCCAAGCATCTCCTTTGGTCCTGCGCTCCTTCGCCTAGCGCCTGGTGCCCC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CCACCCGGCTGCATCCGAGGCTTGCGCGGCCCGGTCCCATCAGCCGAGCGTCGCCCGCCCAGGAGGAGGCTCGG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GTTCTCCGCAGAAGCGAATACTTTCTCTTTTTGTTTTAAGTTAGAACCTTGCTTTTGCAGTGATTCGTTGCTGT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GGCGTGATTTTAAACAGGTGAGAAATCGGAGTCTCATTTTCCCAGGGGGGCTTCCAATGAGGATTTTAAGAGAA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GCGTGCAAAGAAGACAGCAATGTCCATCTTTTTTTTTTCTTGTTTTCTTTTGAACAGAGGGAACCCCCACGCGC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TGAGATAGTTATGTTTTTAAGGCTAAACTTTTTTAAAATTAGTTTTTCTTTTACACTTATGGCTGACTTTTGAT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CCTTTTAAAGAAAGGATGAAGTCAAAACAGATTAATGCTTTTGAATACACAACGTCCCCACGTCCCCAAATTGT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GGTGCTGGGATAGTTCCTCTAAGATGCATTCTGATTTTGAAGTTCAAGGTCTCTAAGCGCTGTTAAGCGGAACC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 ATGAAAAATACGTTGCTACATTAAAGATAAAACAGACGGTGATACTGACTGCAGAATCGTAGTAGAAACTTTTT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TTTTTTTTTTGAGGCTGTGCAGGATTTGCCTTGGTTTTATTAGGGAACCTGCTAATAGAAGCAATTTCAAGTGA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CGGGCTTCCCTCAGTAAAAAGCTGGAAGCAATGACATCTTTTCTATCTGAGTGACTCTCCTTAGTCGTGGTAAA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TAAATAAATAAATAAATAAATAGATAGATAGATAGATAAATAAATAAATAAATAAAAATTAGTTTACATGCAGT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GTTTGAAAAGAAAATGATTTTGCTTCCCAAGTTTTTATGTGTTTTCTTTTTTACCAACTATATTTCACTTTATT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TACAATTGTCAGTTTATTCTCACACCTTCTGGTTAGTTTTATCTTCTCACCATGGTCTGTTAGAACCCCATCCT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CGAGCAAAAAAACAAAAACAAAAACCACCCCCCCAAAACAAACAAACAAACAAACAAAACAGGTGTTCATCCCT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GTGAGATGCTAATGCCCCTGGAACTGTTTGAAAAGAGCAAAATTTTGTAAGGAGATTCTTTTCAAAAAGTGTTA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GAGAAGTATTCTTCAAAAACATCTTAGAATGTTTCCTTAAAAAATTTCCTTTCTTGGTTTTCATTAATTGCCTT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TGATTAAAATTAGGTTACAAACATATCTTAATTTCAGACTGTTTCTTTATAAAAGAAAGGAGAAAGTAAATAGG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TGTTGGCAAGGACTAAACCAATGCAACTAGGCCCTGTTGAGAGCCTAAATCTGTAAACTGGTACCCTTAAAAAA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CATCAATCAACTTGAGGTTCGTACAGGTAGTTCTTTGACTCAAACAGTTGATTTTTAAAAGTCTTATAAAATAG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GTTAAAATGTGTTTTTAGTCCAGGTTCCTACTTCTTTGTTATGCATTTCTCCTCGTAGATAAATAAATGAATCT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AACTTGATGAGTAGGTAGATTTTTCTCCAGAAGAACTTTCTAAAAATGGGCAAAGTTAGGGAAGTGATTAATAC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CCTTCAGTTTAATTGGAATTATTCAGTGCTTATACCAAGTTAATCCTATTAAGATGCTATTTCCTGCTCAGGGG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GATAAATTAAGCACAACTTAGATTATTTTAGGTGGACAACTGGTATATAGTCTAAGCAATGGGGGCTGGAAAAA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AGTATCTCTTCTCCAAAAAATATAGATTATGTACCAGTAATGTTCAAAGTACTTTGAGGAAGTGTATTGATGGG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 ATGAATATAAATCATAGTGACTGTTGTTAAGGGGTTTACGGATTATAAAGAGCAATTGAGCTTCCTTTATTTTC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TCTTATTTAGAAAACAAACATTCATAAGAAAAAAATAAAATTAGATCCCTTCTTTTGCCCACATACAAATTCAG 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TTTCAGATCAATTAAAAAGTTAAATAAGAAAAATAGAATTAAAAAAATATTGGAAGGCTGGGCGCAGTGGCTCA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCAGATCACGAGGTCAGGAGATTGAGACCATCTTGGCC 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 AACATGGGGAAACCCTATCTCTAGTAAAAATACAAAAATTAGCTGGTTGTGGTGGCACATGCCTGTAATCCCAG 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 CTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCAGCGATTGCAGTGAGCCGAGATCGCGCCA 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 CTGCACTCTAGCCTGGCAGCAGAGTTATCTCTGTAACTCTCCATCTCAAAAAAAAACAAAAAAAATTGAAAGGA 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 AATATAGAATTTGTAGTATGAAAGGATTTCTTAAACAAAACATTAAAATACACAATCCATTAAGGAAATGATCA 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 ATTGGATGACAGTCATGCTCCAAATAATGATATGTTAGTCAATACATGATAATAGTCCCATAAGGTTATAATAT 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 TGTATATTTACTGTACCTTTTCTATGTGTAGATGTGTCTAATTATACAAATACCATTGTGTTACAATTGCCTAC 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 AGTATTCAATACAGTCACATGCTGTACAGGTTTGCAGCCTAGGAGCAATAGGCTTGTACCATATACAAACCATC 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 TAGGTTTGTGTAATTACACTCTATGATGTTAGCATGACAAAACTGCCTATGGACCTATTTCTCAGAATATGTCC 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 CTGTAGTTGAGTGCCATGTGACTGTATATAAAAATTTTTAAAAATACTTTTTACATGACAAAAGATATCATAAA 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 ATGTTACAAGATAAACTGAGAAGATATTTTCAAGGCATGTACTTGGTGAAGGATTCATATTCAAAATGTATAAA 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 TAACTTATATAGAAAGAATTTACTAATTTATGTATAATGAATTTCATAAATAAAAGATGTGGGCCAGGATATAT 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 ACATATGAAGTGAAAGTATAGTACTATCAATAGGATGAATACATATCAACTTCAAAAAATGTAATTTCCTTTGG 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 GATAGAAAGAAAGAAGGAAGGAGGGGGAATAGGAAGAGGGCAACAACTTCCTGCCCAGGGGGCAACAACTCTTT 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 TTTTTTTTTTTTTTGAGACAGAGTCTTGCTTTTGTCCCCCAGGCTTGAGTACAATGACTCGATCTCGGCTCACT 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 GCAACCTCCGCCTCTCGGGTTCAAATGATTCTCCTGCCTCTGCCTCCCAAGTAGCCAGTTAAGGCACCTGCCAC 4440
Query 1 ----------------------------------ATGGGGTTTCTCCATGTCGGTCAGGCTGGTCTGGAACTCC 40
|.||.|||||.||||.|.||.|||||||||||.|||||||
Sbjct 4441 CATGCCCGTCTAATTTTTGTGTTTTTTAGTAGAGACGGAGTTTCACCATTTTGGCCAGGCTGGTCTCGAACTCC 4514
Query 41 TGACCTCAGGTGATCCGCCCACCTCAGCCTCC------------------------------------------ 72
|||||||||.||||||||||||||||||||||
Sbjct 4515 TGACCTCAGTTGATCCGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCGCCCAGCCC 4588
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4589 ACAGCAATTCTTTATAAAAAGATCAGAGGCAACTATGGGAAGACATTAACACTTTTTGTTCTTTGTAGATTGTT 4662
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4663 AAAAGCTTGTTATAATTTATTTAAAAATCTCTAACATCAATTCCTAGTCTAAAGAATGAACAAATGACACATTT 4736
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4737 CTTTTCCTTAGTCAATAATAATCTTGTAAGATGGTGTTCACGTGCTTTTCTTTGAGGGCAAAGAAAACACCATT 4810
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4811 CCCCAGTGTTTTTCCTGGGCAGTGTTTGAATATTATATGATACTCACAGCAGAGATTTTCCTAGTTTGGCTTCT 4884
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4885 GTTGTAAGCTTGTTTTCTGAGTAGATTTAAATGAGAAGAACAGAAACATATTTGAAACTATGACTATGTATAAG 4958
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4959 AGCATTTATTCTCCTATAATGAAATCGTGGAAAATGTTTTTAAAAAGTGAGCAAACAAAAACCTCCACACCATT 5032
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5033 ATAGAAACACGGTTAAAAAACTATTGAATAATCTCAAGCCTAGTGTGTAATAATTATTAAGTGTGTCTAATTTG 5106
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5107 TTGTGCTAAGTGTCAGGAATTGGTATTGTGGAAGGATATGTGAGATCTCATTTTCTCCTTTTATATGGCAGGAG 5180
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5181 TTTATACAGTATTTACATCTGTCATTGATACTTTTTATGAACAGAAGTTTTGTTTACTTATAACTTCCACAGGG 5254
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5255 ATTATTCATATGGAGCACTGGAAAGATGTAACATTTCATTTGCTTTGATACCTTGTGTTTATTTTAGGTCGAAA 5328
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5329 AGCATCATGAAGCCAAGTGGTTATTGTTTTGCTTATTCAGTGTGAACTGAGTGAGCCAGGTTTGTATACCAAGT 5402
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5403 GATTCTCGTGGTGGACAATACCAATATGATTATGCCAAATGCATTGCTTCTGAGGCATCACTCTTTGGGCACAT 5476
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5477 ATAGACCCTGCTGATTTCTGCCAAAGCACTCTTCTTAAAGTTCCAAAACATTACCCCAAAACCTCTATAGCCCC 5550
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5551 CTATTGCCAACAAAATTAAAGCCTTTCTCTTCATTGGCATTAGAAGCCCCTGTAACCCATTGCTTTTCCATTTC 5624
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5625 CAGCCTCTTTCCAAAATTACCAAACAAACTCTGTATCCTGCAGCCACCAAACTGTACTAGTTGTAATATATTCA 5698
Query 73 --------- 72
Sbjct 5699 CTAAGAACA 5707
