Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_10261
Subject:
XR_001747390.2
Aligned Length:
5707
Identities:
64
Gaps:
5635

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TACCAAAGTACAACTTCCAATTTTTATTTCAGAAGGAAACCATCCTTGAGAGATGAGAAAATAACTTACTTTAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCTTTATTCATTTTTGTATTTGGCTGCCATAAAATATCTTTTACTAAGTAGCTTTAGGGTTTTTTTTTTAATCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AATCCTGATTAAATTAAAAGAAAAACCTGGTAAGTTAATTGTAAGCTTTCCCATAAAAGAGAGAAGCACAAAAT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCCATGGAATATATCCAAGAAACATAACATAAACATGAGACTTACAATGCACAATTTAAAATTTCATATGTTGT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CAAATGATAAATGTCTGTTCCAGCTATGAATACTTTAACTTCAAAAATCTTTCATAGCCTTAAAAAAGAACTCT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CACAGAAACAGAAGCTGGAATGTTATTTGTGAACTAGGCCTTGCACCTTGTCAATATTTTTAGTTCTTAAATTT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CTGGAATGTTCTAAAGACATAAAACATCTACTTCATTTTGAAATTTTGATTTTAACATTTCACTAACAACACTG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GGAAAGGATCATCTTAACTAAAGGTGTCAAGACTAACGTTTGAGCTTAGCCGTTGAACTTTCTCTTAGGGGAAA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CAGTTTAATCCCCAAGTACTATGAGATAGGCGTTTTAAGGCAACTTTTTAAAAAGGAAAATAAATCTGCTTTTT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GCCGTCTAGGAAAGATACATTTTTCCTTGTGGAAATCTGCAGTCTGAAAAGACAGATATGAAAAGCATGAACTG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TTGAAAATAACCTAAATGTTCTTTGAAAATTTAAAGGCCAGCTTATCCTGCAATGGTGATAGAATAGTCGGCTT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ACAACACGCAAAGCCGAGCCGCGGGTGGGCAGGCGCCGCCCGTGGCTCGCGGAGTGGATGCACTCGAGGGCGCG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GCCGCTGCGCTTGGGGAACTTTCAGGGCGCCAAGTACGGGTAGCGCTTCTGATGGATTCCCGGGTCTGGGAGGA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TCCGATTATCCCGGGGCCGGGTGACACGCACAAAGCTGAGGTTAGAGTTGGCCAGGAAGGGAGGACCTGGTGAG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CCGGTGGAACAAAAGCGGGAAGGCCTTTCCTTCTAGGAGCAAAACCAGCGACGCGTCCCGGACGCCCGGGGACC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CCTGTGGGTCTCGGTTTCCTTCGCTGTGACCCTGACATGTTTCCCTCCACCGGCCCGAGGAAACCGTCGCTTCC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AGCCTCCAGGTGTTATCTTAGGAGCCAAGCATCTCCTTTGGTCCTGCGCTCCTTCGCCTAGCGCCTGGTGCCCC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CCACCCGGCTGCATCCGAGGCTTGCGCGGCCCGGTCCCATCAGCCGAGCGTCGCCCGCCCAGGAGGAGGCTCGG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GTTCTCCGCAGAAGCGAATACTTTCTCTTTTTGTTTTAAGTTAGAACCTTGCTTTTGCAGTGATTCGTTGCTGT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GGCGTGATTTTAAACAGGTGAGAAATCGGAGTCTCATTTTCCCAGGGGGGCTTCCAATGAGGATTTTAAGAGAA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GCGTGCAAAGAAGACAGCAATGTCCATCTTTTTTTTTTCTTGTTTTCTTTTGAACAGAGGGAACCCCCACGCGC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TGAGATAGTTATGTTTTTAAGGCTAAACTTTTTTAAAATTAGTTTTTCTTTTACACTTATGGCTGACTTTTGAT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  CCTTTTAAAGAAAGGATGAAGTCAAAACAGATTAATGCTTTTGAATACACAACGTCCCCACGTCCCCAAATTGT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  GGTGCTGGGATAGTTCCTCTAAGATGCATTCTGATTTTGAAGTTCAAGGTCTCTAAGCGCTGTTAAGCGGAACC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  ATGAAAAATACGTTGCTACATTAAAGATAAAACAGACGGTGATACTGACTGCAGAATCGTAGTAGAAACTTTTT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TTTTTTTTTTGAGGCTGTGCAGGATTTGCCTTGGTTTTATTAGGGAACCTGCTAATAGAAGCAATTTCAAGTGA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CGGGCTTCCCTCAGTAAAAAGCTGGAAGCAATGACATCTTTTCTATCTGAGTGACTCTCCTTAGTCGTGGTAAA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TAAATAAATAAATAAATAAATAGATAGATAGATAGATAAATAAATAAATAAATAAAAATTAGTTTACATGCAGT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GTTTGAAAAGAAAATGATTTTGCTTCCCAAGTTTTTATGTGTTTTCTTTTTTACCAACTATATTTCACTTTATT  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TACAATTGTCAGTTTATTCTCACACCTTCTGGTTAGTTTTATCTTCTCACCATGGTCTGTTAGAACCCCATCCT  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CGAGCAAAAAAACAAAAACAAAAACCACCCCCCCAAAACAAACAAACAAACAAACAAAACAGGTGTTCATCCCT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GTGAGATGCTAATGCCCCTGGAACTGTTTGAAAAGAGCAAAATTTTGTAAGGAGATTCTTTTCAAAAAGTGTTA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  GAGAAGTATTCTTCAAAAACATCTTAGAATGTTTCCTTAAAAAATTTCCTTTCTTGGTTTTCATTAATTGCCTT  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TGATTAAAATTAGGTTACAAACATATCTTAATTTCAGACTGTTTCTTTATAAAAGAAAGGAGAAAGTAAATAGG  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TGTTGGCAAGGACTAAACCAATGCAACTAGGCCCTGTTGAGAGCCTAAATCTGTAAACTGGTACCCTTAAAAAA  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  CATCAATCAACTTGAGGTTCGTACAGGTAGTTCTTTGACTCAAACAGTTGATTTTTAAAAGTCTTATAAAATAG  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  GTTAAAATGTGTTTTTAGTCCAGGTTCCTACTTCTTTGTTATGCATTTCTCCTCGTAGATAAATAAATGAATCT  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  AACTTGATGAGTAGGTAGATTTTTCTCCAGAAGAACTTTCTAAAAATGGGCAAAGTTAGGGAAGTGATTAATAC  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  CCTTCAGTTTAATTGGAATTATTCAGTGCTTATACCAAGTTAATCCTATTAAGATGCTATTTCCTGCTCAGGGG  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  GATAAATTAAGCACAACTTAGATTATTTTAGGTGGACAACTGGTATATAGTCTAAGCAATGGGGGCTGGAAAAA  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  AGTATCTCTTCTCCAAAAAATATAGATTATGTACCAGTAATGTTCAAAGTACTTTGAGGAAGTGTATTGATGGG  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  ATGAATATAAATCATAGTGACTGTTGTTAAGGGGTTTACGGATTATAAAGAGCAATTGAGCTTCCTTTATTTTC  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  TCTTATTTAGAAAACAAACATTCATAAGAAAAAAATAAAATTAGATCCCTTCTTTTGCCCACATACAAATTCAG  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  TTTCAGATCAATTAAAAAGTTAAATAAGAAAAATAGAATTAAAAAAATATTGGAAGGCTGGGCGCAGTGGCTCA  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  CGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCAGATCACGAGGTCAGGAGATTGAGACCATCTTGGCC  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  AACATGGGGAAACCCTATCTCTAGTAAAAATACAAAAATTAGCTGGTTGTGGTGGCACATGCCTGTAATCCCAG  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  CTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCAGCGATTGCAGTGAGCCGAGATCGCGCCA  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  CTGCACTCTAGCCTGGCAGCAGAGTTATCTCTGTAACTCTCCATCTCAAAAAAAAACAAAAAAAATTGAAAGGA  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  AATATAGAATTTGTAGTATGAAAGGATTTCTTAAACAAAACATTAAAATACACAATCCATTAAGGAAATGATCA  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  ATTGGATGACAGTCATGCTCCAAATAATGATATGTTAGTCAATACATGATAATAGTCCCATAAGGTTATAATAT  3700

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3701  TGTATATTTACTGTACCTTTTCTATGTGTAGATGTGTCTAATTATACAAATACCATTGTGTTACAATTGCCTAC  3774

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3775  AGTATTCAATACAGTCACATGCTGTACAGGTTTGCAGCCTAGGAGCAATAGGCTTGTACCATATACAAACCATC  3848

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3849  TAGGTTTGTGTAATTACACTCTATGATGTTAGCATGACAAAACTGCCTATGGACCTATTTCTCAGAATATGTCC  3922

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3923  CTGTAGTTGAGTGCCATGTGACTGTATATAAAAATTTTTAAAAATACTTTTTACATGACAAAAGATATCATAAA  3996

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3997  ATGTTACAAGATAAACTGAGAAGATATTTTCAAGGCATGTACTTGGTGAAGGATTCATATTCAAAATGTATAAA  4070

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4071  TAACTTATATAGAAAGAATTTACTAATTTATGTATAATGAATTTCATAAATAAAAGATGTGGGCCAGGATATAT  4144

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4145  ACATATGAAGTGAAAGTATAGTACTATCAATAGGATGAATACATATCAACTTCAAAAAATGTAATTTCCTTTGG  4218

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4219  GATAGAAAGAAAGAAGGAAGGAGGGGGAATAGGAAGAGGGCAACAACTTCCTGCCCAGGGGGCAACAACTCTTT  4292

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4293  TTTTTTTTTTTTTTGAGACAGAGTCTTGCTTTTGTCCCCCAGGCTTGAGTACAATGACTCGATCTCGGCTCACT  4366

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4367  GCAACCTCCGCCTCTCGGGTTCAAATGATTCTCCTGCCTCTGCCTCCCAAGTAGCCAGTTAAGGCACCTGCCAC  4440

Query    1  ----------------------------------ATGGGGTTTCTCCATGTCGGTCAGGCTGGTCTGGAACTCC  40
                                              |.||.|||||.||||.|.||.|||||||||||.|||||||
Sbjct 4441  CATGCCCGTCTAATTTTTGTGTTTTTTAGTAGAGACGGAGTTTCACCATTTTGGCCAGGCTGGTCTCGAACTCC  4514

Query   41  TGACCTCAGGTGATCCGCCCACCTCAGCCTCC------------------------------------------  72
            |||||||||.||||||||||||||||||||||                                          
Sbjct 4515  TGACCTCAGTTGATCCGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCGCCCAGCCC  4588

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4589  ACAGCAATTCTTTATAAAAAGATCAGAGGCAACTATGGGAAGACATTAACACTTTTTGTTCTTTGTAGATTGTT  4662

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4663  AAAAGCTTGTTATAATTTATTTAAAAATCTCTAACATCAATTCCTAGTCTAAAGAATGAACAAATGACACATTT  4736

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4737  CTTTTCCTTAGTCAATAATAATCTTGTAAGATGGTGTTCACGTGCTTTTCTTTGAGGGCAAAGAAAACACCATT  4810

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4811  CCCCAGTGTTTTTCCTGGGCAGTGTTTGAATATTATATGATACTCACAGCAGAGATTTTCCTAGTTTGGCTTCT  4884

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4885  GTTGTAAGCTTGTTTTCTGAGTAGATTTAAATGAGAAGAACAGAAACATATTTGAAACTATGACTATGTATAAG  4958

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4959  AGCATTTATTCTCCTATAATGAAATCGTGGAAAATGTTTTTAAAAAGTGAGCAAACAAAAACCTCCACACCATT  5032

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5033  ATAGAAACACGGTTAAAAAACTATTGAATAATCTCAAGCCTAGTGTGTAATAATTATTAAGTGTGTCTAATTTG  5106

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5107  TTGTGCTAAGTGTCAGGAATTGGTATTGTGGAAGGATATGTGAGATCTCATTTTCTCCTTTTATATGGCAGGAG  5180

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5181  TTTATACAGTATTTACATCTGTCATTGATACTTTTTATGAACAGAAGTTTTGTTTACTTATAACTTCCACAGGG  5254

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5255  ATTATTCATATGGAGCACTGGAAAGATGTAACATTTCATTTGCTTTGATACCTTGTGTTTATTTTAGGTCGAAA  5328

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5329  AGCATCATGAAGCCAAGTGGTTATTGTTTTGCTTATTCAGTGTGAACTGAGTGAGCCAGGTTTGTATACCAAGT  5402

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5403  GATTCTCGTGGTGGACAATACCAATATGATTATGCCAAATGCATTGCTTCTGAGGCATCACTCTTTGGGCACAT  5476

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5477  ATAGACCCTGCTGATTTCTGCCAAAGCACTCTTCTTAAAGTTCCAAAACATTACCCCAAAACCTCTATAGCCCC  5550

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5551  CTATTGCCAACAAAATTAAAGCCTTTCTCTTCATTGGCATTAGAAGCCCCTGTAACCCATTGCTTTTCCATTTC  5624

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5625  CAGCCTCTTTCCAAAATTACCAAACAAACTCTGTATCCTGCAGCCACCAAACTGTACTAGTTGTAATATATTCA  5698

Query   73  ---------  72
                     
Sbjct 5699  CTAAGAACA  5707

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