Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_10261
- Subject:
- XR_001747990.1
- Aligned Length:
- 6901
- Identities:
- 64
- Gaps:
- 6829
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CACACGTACACACACACACACACACACACACACACACACACTACATATTTTTGATGTTATCTCAAATGTCTCTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AACCTTTGTTCATTTTTCTCCATTCTTTTTTCCTTTCTATCCCTTAGACTGTATAATATCAATTTACATATCTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TAATTCACAGATTCTTTCTTCTGCCTGCTCAGATCTGCTGTTGAGCCCTTCTAGTAAATTTTTCATTTCAGCTA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TCATACTACTCAACTCCAGAATTTATATTTGGTTCTTGAAAAAAATATATAATTTCTATCTCCTTGTTGATATT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CATTACCTGATAAGATATTATTCTCATACCTTTTTCTAGTTCTTTGGATATGGTTTTCTTTACTTCTTTGAATG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TATATAGAATAGCTGATTTAAAGTTTTCATCTTATAAGTTCAATATATGGGCTTCAGGGACAGTTTTTATCAAT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TATTTTTTCCCCCGGTGTATGTGCCTTACTTTCTTGTTTCTTTGTGTGCCTCATAATTTCTTATTGAAAACTGC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ATTTTAAATAACATAATATAATACAGCAACTTTGGAAATAACCTTCTCTCCCTTCCTCAGGGTTTGTTGTTGTT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GATGTTGCTTCTTTGTGTGTTTAGTGACTTTTCTGAGCTAATTCTGCAAAGTCTGTGTTTTTTGTCATGTGTGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CCACTGAAATCTCTCTCTGCTTAGTGTTCAGCTAGTAATTAGACAGAGAGTTTCTTGATGCTTGAGACCAATAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GTCACCTTGTTTTTGCAGAGTGGCTCTGTGTGTATGTTGGGACATGCCTTCAACTCTCAGACAGGACATTGACA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ACTCCACCTTAGCCTTCCTGCTTGTGCAGAGCCTTAAGCTTAGCCCAGGGTGAGAGCTCAGGACCTTCCTTAGT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TTTTCCTGCACATGTGCACAGCCCTGGGCATGTGCACCCTCCTGTGCGTACATATGGCTTTCTATATTCCTTGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GATATTTCAGAGCCTTTCAAGGCCCTTTATAGATATTTTATTCCCCCACATTTTCTTTTTAAGCTTTTTGTTTA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GCCCTTTTTTTTTTTTTGCCTCAACTGTTATCCATTGTTTTAGGCAGCCACAAAGTCCAACAATTGTCTCTAGT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TGTTTTCAACAAATACCCTTAAGGAAAAAGCTGTTCACTCCAGGCAAGCTTTGAGACAGGTGAAATAAAGACAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TCTTGCAAATGGTATCTTCCAGGGAACCACTAGACAGGTCAAATAATTACAACTCTCTGGGAATGAGGCTTTGA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AGGAACTCCAAGGCTGTTCTACCCCTTCTTGTAGCTGCCAGGCTGCTGGTTTCCATGATGATTGTGGTTTGTTG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GTTTTCAAAGCTACTGCAGAGTTGGGGTGAGGGGGATGGAATTGGAGCAAGTTAAAATGCCACAAGGCTCACTC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TTCTTTCTATAATTATGTCATTTTTTTTCTTGAACGAAGACTTCCCAGATTGCTATAAACTTTTGATTAATTTC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CAGAGTTCTGAAAAAATTGATTCTCACCATTTTTTGCCATTTTTCTCATTGCTTTTAGGGGGGAGGAAATTTTC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AGAGGATTTTACTCCTACCATTTTCATTGACATTACGTGCAATATATTTTAATTACCCTTCTTTGTGATTGCTT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TGTCACTTCTCAAAACTCAGTTCAAATGTCTCCTCCATTGCAAAGCCCTCTTCTTTGTATCCTCAGGGCAGCTA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TTCCTCTATTCTCCTATACCTCTGGGTTTATGTCTTTGTTATTTCACTTTTCATAATAACAGTTACTTACATCT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GTTTCTATCCCTTTTTCCAGTCTGTAAGCACCCAGTCTGTGACTTGTTCATCCTCCATGCCCAGGCTAGTTTCT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GACACACGGTAGATATTCAGGTTTGTAGTCTGAAGAGTATTGTCCTAGGAGACCTCAGAGCCTAGCCAAGGGCT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TCTGAGTTCCAGCCACCATTTCTCTCCTTCTTCTATAATTCACAGCTGACCTCTATCTCTTCATTGTCTTATGT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GTGCTCTGGTGTGATGAGAGTAAGTTCAGAATTGACACACTGAGTGTATGATATGGTTTGGATCTGTGTCCCAA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CCCAAATCTCATGTCAAATTATAATCCTCAATGTTAAAAGTGGACTCTGATGGGAGGTGATTTGATCATGGGAG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TGGATCCTTCATGATCAAGAAACCTTCATGATTCATCATCCACTTGGTGCTATTCTCGTGATAGAGTTCTCATG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AGATCTGGTTGTTTAAAAGTGTGTGGCACCTCCCCCTTCTCTCTCTTGCTCTTGCTCCTGCCATGTTAGAGGCC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TTGCTCCCCCTTTTTCTTTCACCATGATTGGAAGCTTCCTGAGGCCTCCCCAGAAGCAGAAGTCACTGTGCTTC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CTGTACAGCCTGTGGAACAGTGAGAACTTCTTTTCTCTTGAAATTGTCCAGTCTTAGGTATTTATTTATAGCAG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TGCAAGAATTGACTAATACAGTGTATGAGGAAAATAGGGAGCAAAAAGTTAAATCCTGTGTGGGTGACATTCAG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CAACAACAACAACAACAACAACAACAATAATAATAGCAGCTACTGTTTGCTGAATACAGTCTGTGCTAGACACC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AGGCTATGGGCTTTATAGGCAATATCTCAATGAATTCTGACATCAACCCTATGAGGCATGTACTATTATCCTCA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TTTTACAGGTGAGGCTGAGTAAGGGAAGTGGGAGAACTGAGGTTGGATGAAGGCCTGACTCTAAAGCCTATATT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CTTAACTGTCCCTTCTGAGGGGTTTTTGAGCAGCCAGTTGGAGGAAAGGAAGCCCCACCTGTGTTTGCCTTCCC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CAGGACCTATTCTGCCTCCTTGTCTAAAGAGATGTGCCTGCTCCCAGGTGTGTTTAGCCCCGTGTGGGCTCACT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TGGGTCACCTTGTGCTTTGAAACAAGATAGCACTGAGGGCTCCTGCTGCAACTGGCTCCCAGGGCAGACAGGGG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TAGAGGCCCCACTTCCCTGGCATTGGGGAGACAGATGTGGCCCTCGGGCAAGAGGTGACAAAGATCTTCCATCA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TCACCCCAACAATTCCAACATGGTGACAGCCCCAGACTGCTAGAAAAGCCAACCCACATGGAGGCGAGATAAAA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TCCAGAGGGCTCAGAAACATTTCAACAAATGCTAATATCGGTCTCTCCAATACAGCTCTGTCAGCAGGAAGGGA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GAATTCTGCCAGCATGCATGCATGGGGCACACTTTTTGGCACAAGGGACCTTGTTGCTAAGCAACAGTAGTTGG 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CCTCCCCTCCTCCCCATAACCTTTTCCTCTGTTTCTGAGTTTCCAGTTAGCAGATGGGAGGGGCTGGGGTTGCC 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TAGCCCAGCCCAGCCCTTGTCCCCCTTTCCTGCAACAAGGGGCCTATTCATGGGTCCTCAGCAGAGTTCATTGT 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 CTCTGTGGCGCGTGTCTGTGTGAGTGTTGGAGTAGGGATACAGGGAGGGGCCATGTGCGAACCAGGGAGACCTC 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 ATCTTCCAACCAAGCTTGCTGGGCTAGCTTTAATCAATGCTGGCCTGAGAACAGGAGCGGAACATTGCCTAGTA 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 GACCCTGAGGCTTTACAACAGTGCCACTGACCCCTATGAGCCTGATGCTGGATGACCAACCCCCTATGGAGGCC 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 CAGTATGCAGAGGAGGGCCCAGGACCTGGGATCTTCAGAGCAGAGCCTGGAGACCAGCAGCATCCCATTTCTCA 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 GGCAGTGTGCTGGCGTTCCATGCGACGTGGCTGTGCAGTGCTGGGAGCCCTGGGGCTGCTGGCCGGTGCAGGTG 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 TTGGCTCATGGCTCCTAGTGCTGTATCTGTGTCCTGCTGCCTCTCAGCCCATTTCCGGGACCTTGCAGGATGAG 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 GAGATAACTTTGAGCTGCTCAGAGGCCAGCGCTGAGGAAGCTCTGCTCCCTGCACTTCCCAAAACAGTATCTTT 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 CAGAATAAACAGCGAAGACTTCTTGCTGGAAGCGCAAGTGAGGGATCAGCCACGCTGGCTCCTGGTCTGCCATG 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 AGGGCTGGAGCCCCGCCCTGGGGCTGCAGATCTGCTGGAGCCTTGGGCATCTCAGACTCACTCACCACAAGGGA 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 GTAAACCTCACTGACATCAAACTCAACAGTTCCCAGGAGTTTGCTCAGCTCTCTCCTAGACTGGGAGGCTTCCT 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 GGAGGAGGCGTGGCAGCCCAGGAACAACTGCACTTCTGGTCAAGTTGTTTCCCTCAGATGCTCTGAGTGTGGAG 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 CGAGGCCCCTGGCTTCCCGGATAGTTGGTGGGCAGTCTGTGGCTCCTGGGCGCTGGCCGTGGCAGGCCAGCGTG 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 GCCCTGGGCTTCCGGCACACGTGTGGGGGCTCTGTGCTAGCGCCACGCTGGGTGGTGACTGCTGCACATTGTAT 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 GCACAGGCAAGTCTCTGTGGCTGCTGAGGACAGAGAGCCTCAGTTGCCCTTTCTGTTCGGCTGTTGGTATGTCC 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 TGTATCAAATGTTCGTGTCCAACTGTCTCCAGCTTTTTGCTCCAAAAGGGTAAGACTGGTGTTTGTGAAGTTCT 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 CTCATTCAGTATCAAGAACAGATCTGCACAAATAACAGTAATAATATGAAGATTTGTTCTTTATATTCATCAGT 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 TTTTTTTTTTTTTTTTTGAGACAGAGTCTCACTTTGTTGCCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCA 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 CTGCAACCTTCACCTCCTGGGTTCAAGCGATTCTTGTGCCTCAGCTGGGCACCACTATGTTCAGCTAATTTTTT 4736
Query 1 ---------------ATGGGGTTTCTCCATGTCGGTCAGGCTGGTCTGGAACTCCTGACCTCAGGTGATCCGCC 59
||||||||||.||||||.||.|.|||||||||.||||||||||||||||||||||.|||
Sbjct 4737 GTATTTTTAGTAGAGATGGGGTTTCGCCATGTTGGCCTGGCTGGTCTCGAACTCCTGACCTCAGGTGATCTGCC 4810
Query 60 CACCTCAGCCTCC------------------------------------------------------------- 72
..|||||||||||
Sbjct 4811 TGCCTCAGCCTCCCAAAGTGCTGGGATAACAGGCGTGAGCCACCGTGCCTGGCCTCATTAGCTTTTAAGTGTTA 4884
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4885 AAAATACTTTCACATTCACAGTATCCTGTGTTTCTTCAGGCTTATCTTTGGTTCAATCATTTTCCATGTAATTA 4958
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4959 TTTGGTTAATATGTTTCTTCCCCTTTAGATGGGAAGCTCTGCAGGAGCAGGGACTCTCAGTCTTATTTACCACT 5032
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5033 AAATCTCTTTGTAGATTTATCCACTGCTGTGTCCCCAGGGTCTAGAACAGTCCCTGGAATATAGTAGGTGCTTA 5106
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5107 ATAAATATGACTTGGAGGAATGAATGAATGATGAGTGAATGAGCTCTTTGATCTTCTCTTGGTGCCGGACAGGG 5180
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5181 CAGAGAGTGTAATCCCCATTTTACCGAGGCTGAGAGGGAGAAGTGCCTCTCCCATGATCACACACAGTAAGTTG 5254
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5255 AGAGATGGGACCAGGGGAAGTTTTTCCAACACAAGGCCCTCTATGTGTTTGTTATAAAACTTGGAGGGAAGTTA 5328
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5329 TGCAGGAAAGAGGGAGTGGTGGTTGCAGATGACCCATAGTCTTCTCTATCCATCAGTCCTGCAGCATTTATTAA 5402
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5403 GCACCTACTGCATGCCCAGTGTCTTGCCGGCTGCTGGGGTGATACTAAGAGGCATAGTCTGTGGGGCCTGGGAG 5476
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5477 CTCACCGCCTGCTGACGGCCCCCCCACCAATGGCTGCTCTGGCCAGCTTCCTCCACCTGCTACCTTGCTTAGGA 5550
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5551 ACACCTCTTCTGCCCCTTCCTTCCCCGCTCAGCATGGCCCCTGTGTGCAGTTTCAGGCTGGCCCGCCTGTCCAG 5624
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5625 CTGGCGGGTTCATGCGGGGCTGGTCAGCCACAGTGCCGTCAGGCCCCACCAAGGGGCTCTGGTGGAGAGGATTA 5698
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5699 TCCCACACCCCCTCTACAGTGCCCAGAATCATGACTACGACGTCGCCCTCCTGAGGCTCCAGACCGCTCTCAAC 5772
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5773 TTCTCAGACACTGTGGGCGCTGTGTGCCTGCCGGCCAAGGAACAGCATTTTCCGAAGGGCTCGCGGTGCTGGGT 5846
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5847 GTCTGGCTGGGGCCACACCCACCCTAGCCATACTTACAGCTCGGATATGCTCCAGGACACGGTGGTGCCCTTGT 5920
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5921 TCAGCACTCAGCTCTGCAACAGCTCTTGCGTGTACAGCGGAGCCCTCACCCCCCGCATGCTTTGCGCTGGCTAC 5994
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5995 CTGGACGGAAGGGCTGATGCATGCCAGGGAGATAGCGGGGGCCCCCTAGTGTGCCCAGATGGGGACACATGGCG 6068
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6069 CCTAGTGGGGGTGGTCAGCTGGGGGCGTGGCTGCGCAGAGCCCAATCACCCAGGTGTCTACGCCAAGGTAGCTG 6142
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6143 AGTTTCTGGACTGGATCCATGACACTGCTCAGGACTCCCTCCTCTGAGTCCTGCTGTTTCCTCCAGTCTCACTG 6216
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6217 CACACCACTGCCTCATGCTTCCTGGGGCCTCCAGCAGCTCCACTAATGGAGGAGAGGCAGTAGCCTCCGACACA 6290
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6291 GAACGCATGGACCTCCTACTACTGTGTGTGAGGAACAGTCACTACCCACTGGCCAGCCACCCAGCCAACAGGTC 6364
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6365 TCTCCTCTTGGGCCCTGATTTCAGAGTCCTCTTTCTCACTAGAGACTCAATGACAGAAGAGAGGCTGGGACTTG 6438
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6439 GTTGGGCATGCTGTGGTTGCTGAGGGATGAGGGGGAGGAGAGAGGTAGGAGCTGGAGATGAAGAGGCTGCTAGA 6512
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6513 AGCAGCAGGAAGCCTGCCCTTCTGCCCTCTCCCCTCCCTGCCCCTGTGTGAGTCTTTTGGGAGGGTGCTGGGAG 6586
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6587 GTGCCCCCCGTCCCACCTTTTTCCTGTGCTCTAGGTGGGCTAAGTGCCTCCCTAGAGGACTCCATGGCTGAGAG 6660
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6661 GCTCCTGGGCAGATGGGGTCAAGGCTGGGCCAGCCCAGATGAAGCCTATGGGAGTCAGGACCCTCTCCACTCTC 6734
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6735 CCTCTCCACTCCCCTTCCTGTTCTCACCTGGCTGTGGCTGGCCCTGTGTGGGGTGGGTACACTGGAAAACAAGA 6808
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6809 AGGTTGGAGTTGGTCTAGGACATTGGTTTTAAATGACAGTTCTGTGAACTGGTCCAAGGAGTTCTGTTATTAAA 6882
Query 73 ------------------- 72
Sbjct 6883 GTGATATATGGTCTTGGTC 6901
