Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_10261
- Subject:
- XR_002957773.1
- Aligned Length:
- 6598
- Identities:
- 64
- Gaps:
- 6526
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGCCGGCGAGGGCCAGCGCCGGTCATGGGGAGCCGCCGCCGCCTCCGCCTCCGCCTCCGCGAGCGCGGTTTTCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCCCAGCGGGGCTCCGACCTCTCCCCCTGGCGGGGGTGAGCCTCGCGGCTAAGGCAGAGGGGATGGCGGACCCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTGAGGAGGACGCTGTCCAGGCTCCGGGGAAGGCGGGGTCCCCGCGGCACCGGGGGGCTAGGGCTCCGGGCGGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGCCGCAGCTGCGGTGGCGGCCTCTTCGGCAGCCGCGGGAGACGCCTGGGGTGCCGCAGACACCCTCCCACGTG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGCACGCCGGGGGACACGGGCGGAGCCTACAGCAGCCCTCGCCGTCACCTGAGGCGTGGGGTCCCGGGGCGCGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GTCCCCGGAGGGCACCCGGAGCAGTTGGGGGCGCTCGGGCCTCGGCCGCGCGGCGGGCAGGAGGCCGCCCCCCA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GAGCCATGGGCTCGCTCACGCCCCTCCGCACTCCCCGGAGGGCTCCGAGGACAGCGGAGAGGAGGAGGAAGACG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ACAAGGACGAAGACGACTACGACGCCGACTACTACGAAAACCTGCCCGGCGGCTCGCAGTCTGCGCCCGAGCCT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GAGGGGGCGGAGGCGGAACGGCGTCCCCCGCCTCCCCCAGCGGCGGGCTCCTCCCTGGGGGCGGAGGGCGGCCG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CCTGGAGACAGGCAGGCTGCGGACCCAGTTGCGAGAGGCCTATTATCTGCTGATCCAGGCCATGCACGACCTGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CCCCTGACTCGGGCGCGCGGCGGGGCGGCAGGGGCTTGGCGGATCACAGCTTCCCCGCGGGAGCCCGGGCTCCG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GGCCAGCCGCCTTCCCGCGGCGCCGCGTACCGCCGAGCCTGCCCCCGGGACGGGGAGCGGGGAGGCGGCGGACG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCCTCGGCAGCAGGTGTCCCCGCCCCGGTCGCCTCAGAGGGAGCCGCGGGGAGGCCAGCTGCGGACTCCTCGGA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TGCGGCCGTCCTGCAGCAGAAGCCTCGAGAGCCTCCGGGTGGGTGCCAAGCCGCCTCCCTTCCAGCGGTGGCCG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AGCGACAGCTGGATCAGGTGCGGCGCGCACCGGGACTGGGACGAGCCCCCGCCACGTGGAGGCAGGATGGACGG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CTGGAGTGGGGACCGCGCCCGGGCGGCTGCACCCACCGGCCTCCAGCCTCCAGGCTGCAAGGACCACGGCTGCT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CCTCGGGAAGCCCTTTCAGGGATCCAGCGGGGTCCTCTGTGATACGCAGTGGCAAAGGAGACCGCCAGGAAGGC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CCCTCCTTCCTCAGGCCGCCGGCAGTGACAGTCAAGAAGCTGCAGAAGTGGATGTACAAAGGGCGTCTGCTGTC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CCTGGGAATGAAGGGTCGTGCCCGTGGGACGGCTCCCAAAGTCACAGGAACGCAGGCAGCCTCCCCAAATGTGG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GCGCTTTGAAAGTGCGTGAAAACCGTGTCCTGTCGGTGCCTCCAGACCAAAGAATTACGCTGACAGATTTATTT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GAAAATGCCTATGGGTCTTCAATGAAGGGAAGAGAACTTGAAGAGCTGAAGGATAATATTGAATTCAGAGGTCA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TAAGCCACTTAACAGCATCACTGTTTCAAAGAAACGCAATTGGCTATATCAGAGTACTCTGAGGCCTCTTAATC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TGGAAGAAGAAAATAAGAAATGCCAAGATAGAAGTCATTTATCCATCTCACCTGTGTCTCTACCTAAACATCAG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CTATCACAGTCTTTCCTCAAATCATCTAAAGAGTACTGTACATATGTGGTATGTAACGCTACAAACTCTTCATT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 ATCGAAAAACTGTGCTTTAGATTTTAATGAGGAAAATGATGCAGATGATGAAGGAGAAATATGGTACAATCCCA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TTCCTGAGGATGATGACCTTGGTATATCAAGTGCCTTGAGTTTTGGTGAGGCCGACTCTGCTGTTCTGAAGCTC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CCTGCTGTCAATTTGAGCATGTTGTCTGGCAGTGACCTGATGAAAGCAGAGCGGCATACTGAAGACTCACTGTG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CTCTTCCGAACATGCAGGTGATATTCAGACCACACGGTCAAATGGAATGAATCCTATACATCCTGCCCATTCCA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CAGAATTTGTGCAGCAGTACAAGCAAAAGCTAGGACACAAGACACAAGAAGGTATAATGGTGGAGGACAGTCCC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 ATGTTGAAATCTCCTTTTGCAGGTTCTGGGATCCTGGCTGCTACAAATAGTACTGAATTGGGAATTATGGAACC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 ATCTTCTCCAAATCCTAGCCCTGTGAAAAAAGGCAGTTCAATTAATTGGTCATTGCCAGATAAAATAAAATCTC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CACGAACTGTGAGGAAACTTTCCATGAAAATGAAAAAGTTGCCAGAATTTAGCCGAAAGCTAAGCGTTAAGGGA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ACATTGAATTATATAAACAGTCCAGATAATACTCCTTCTTTGTCTAAATATAACTGCCGAGAAGTTCATCATAC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TGATATTCTGCCCTCTGGGAACACAACCACCGCTGCTAAGAGGAATGTTATAAGCCGATACCATCTTGATACCA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GTGTATCCTCCCAGCAGAGCTACCAGAAGAAAAACTCTATGAGTTCTAAGTATTCCTGCAAAGGTGGTTACCTT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AGTGATGGAGACTCACCTGAACTTACAACTAAAGCTAGCAAACATGGATCTGAAAACAAATTTGGAAAAGGAAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AGAAATAATTTCAAATAGTTGTAGCAAGAATGAAATAGACATTGATGCTTTTAGGCATTATAGCTTTTCTGATC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AACCTAAGTGTTCACAGTACATATCTGGGCTCATGAGTGTACATTTCTATGGTGCTGAGGATTTAAAACCACCT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CGGATAGATTCAAAAGACGTCTTTTGTGCAATTCAGGTAGATTCAGTAAACAAAGCAAGAACAGCTTTGCTCAC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 ATGCCGAACAACATTTTTAGACATGGATCACACTTTCAACATAGAAATTGAAAATGCACAACATTTGAAACTAG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TAGTATTCAGTTGGGAACCCACTCCAAGAAAAAATCGAGTTTGTTGTCATGGAACTGTTGTTCTTCCCACCTTA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TTTAGAGTGACAAAGACTCATCAGTTGGCTGTCAAACTTGAACCTAGAGGTCTTATTTATGTGAAAGTGACTCT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TATGGAACAGTGGGAGAATTCTCTTCATGGACTAGATATAAACCAAGAACCAATAATATTTGGAGTTGATATTC 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 AAAAAGTTGTAGAGAAAGAAAATATAGGACTGATGGTGCCCCTTCTGATACAGAAATGTATTATGGAAATTGAA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 AAGAGAGGCTGTCAGGTGTTCTTAAGGATTATTTAAGAGAACTCCCTTCTCCTCTGATAACAAAGCAGCTTTAT 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 GAGGCTGTATTAGATGCAATGGCAAAAAGTCCTTTGAAAATGTCATCAAATGGTTGTGAGAATGACCCAGGTGA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 CTCTAAGTACACTGTTGACCTGCTGGATTGTCTGCCAGAGATTGAGAAGGCAACCCTAAAGATGTTGTTGGATC 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 ATTTGAAATTGGTGGCTTCCTATCATGAAGTGAATAAGATGACGTGCCAGAATTTGGCTGTGTGCTTTGGACCA 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 GTATTATTAAGTCAGAGGCAAGAGCCTTCCACCCATAACAACAGAGTCTTTACTGATTCAGAAGAACTTGCAAG 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 TGCTTTGGATTTTAAAAAACACATTGAAGTTCTTCATTACTTACTCCAACTCTGGCCAGGCAATAAATGAAGAT 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 AGTAGATAATGCTGTATAATCAAACTCAGTGCAGCGTTTAACTGTCAAAAAATCAACAGACAATTTATTCCCAG 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 AGCAGAAGTCTTCTCTGAATTATCTGAGGCAGAAGAAAGAACGACCTCATATGTTAAATTTGAGTGGTACTGAT 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 TCATCAGGAGTACTTAGGCCAAGGCAAAACCGATTAGACAGTCCACTTAGCAATCGTTATGCAGGAGACTGGAG 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 CAGCTGTGGGGAAAACTACTTTTTAAATACAAAAGAAAATTTAAATGATGTGGATTATGATGATGTCCCTTCAG 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 AAGATAGAAAAATCGGAGAAAATTATAGCAAAATGGATGGGCCAGAAGTAATGATTGAACAGCCAATTCCCATG 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 TCCAAAGAGTGTACATTTCAGACATATTTGACAATGCAGACAGTTGAGTCTACAGTGGATCGAAAAAACAATCT 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 CAAAGATCTACAAGAAAGTATTGATACTTTGATTGGAAATCTGGAACGTGAGCTCAACAAAAACAAGCTTAATA 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 TGAGTTTTTGAGATTGAGGGTTTTTTTTTGTAATGTCTTAAAGTTTCAAATCTGTTTTTGTTTTATTTTCTTAT 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 ACCACCCACAGCGATGTTTTCATTTTTTTACTCTTGAAATCTTTAATTAATTTTTAATAAGTTTATCTGATTCA 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 ATTAAAAACACTATTCATTAATACAATTTTTACTTATCTCACTAGAAAACTTTTCTGGGGATCAATAAAACTTG 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 GACTTCTTGGGATATTTTACTAAATCTTGCCAACTCTATGGAGATAACTTTCAAATGCACTTAAGAAGGTTCAC 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 ATAAGTTATTAGCCCCTCAAGGTTTTTCTGCTTTATGGGAACCACTCTTCTGTAGCTGAGACAGATGTCCTTTT 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 TTTTGTTGTTTTTTGAGACAGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCACTGGTGCGATCTCAGGTCACTG 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 CAACCTCCACCTCCCTGGTTCAAGTGATTCTCCTGCCACAGCCTCCCGAGTAGCTGTGATGACGGGGCCCACCA 4736
Query 1 ----------------------------------ATGGGGTTTCTCCATGTCGGTCAGGCTGGTCTGGAACTCC 40
||||||||||.||||||.||.|||||||||||.|||||||
Sbjct 4737 CCATGCCCAGCTAATTATTGTATTTTTAGTAAAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCC 4810
Query 41 TGACCTCAGGTGATCCGCCCACCTCAGCCTCC------------------------------------------ 72
|||.|||||.||||||||||||||..||||||
Sbjct 4811 TGATCTCAGATGATCCGCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCTGGCCT 4884
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4885 CTAGATGTTCTTTTAGAGGAACATCACAGCTGCTCAGTCTGATTTGCAGTACTGGTCCTGGTACACTGCAACAT 4958
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4959 CCTTTGGTCAAATTTTATTTGTAATGCAAATGCTGCTATAAGAAAATCTTTTTATAAATAAAAGTGAAATTATA 5032
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5033 CAAGTATTAATGTTTTCTGTATTAACAGTAATTATTTAAGCTTATAAAAATTAAATATTTTTATAATCCTGAAA 5106
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5107 CTGTATATATTTATAAATGCATATATGTATAGATATCAGGATGGGGGAGGGGTTATTGTAGAATCACATGTATT 5180
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5181 TTTAAAGTATATATGTCATGAGGCCAAAATTATTATCTTAAAGTATTTTTTTCAGGGAAAGAACATTTAAATTA 5254
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5255 AAGGAGGAATTACATAAAAACACTTGAACAATAATACTCTAGAAGCATCTGAATAGAAATAATAGACTTTCTTT 5328
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5329 CCTTTATTCACAGAAAGTCACAATGTCCCCTGGGAAAAGTCATCTTTTAAATTTGAAATCCTCTAACTCCTTAA 5402
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5403 GGGATTAAGTACCCAGATTTCTGCACTGGTGACTTAGATTTAATAAATCTGCTCCTGTTCTATGCATTTTTATA 5476
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5477 TTCTGCTTTGTTTTAATTATTTATTTGTAGTAGTACATTTATAACATTGACTTTATAATTACCCCCATTTGTTT 5550
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5551 CTAAATAGTCTTGCCAGCATATTACATGTTACTGATTTTTAAAAATTAACTTATTTTGGCTAAGTATATATACA 5624
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5625 ATGTTATAGAATCACAGTAATGTTTGAAAATGTAAATTTAGAAGGCTTTTGTATTAAATCAAAATGTATTTTTT 5698
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5699 TAACTTTTATATCTACAGAATATGTAATTTTAAAATTATAAATAGACTTTAAGTTACCAACTTTTAAGACATGG 5772
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5773 CAGCCATTGAAAAACTGGCTTCCTGATGTTTTTCTAAATATTAAAGTACTTAAAATATTTCTATGCAATAAATA 5846
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5847 TTGATAAACAGACATTATTTAATTTGAAAACCCATTGTTAAAAAAGATAAATATTTTTATATGAAATTTTCATT 5920
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5921 TTTTAAAACTTTGTGTTAACAATTCAGAAGAATACCAAGAGAACATATATATTGAGTAAACAGTCAAAGGAAAG 5994
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5995 TACTCTTGAATGTTTTATAGGAAAGCTGTCTCAGTTTCCTTCCTTTTGTTGCTATATCATGTATGAATTGAATA 6068
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6069 AATTGCTCTAGAAATGTAAAAATTTTATTAAAATATTATAATCTTCGTGTTATGCTATTATAATGGTTTTAAGG 6142
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6143 ATCACTTATTTTAATATTCTTTTTAAGCAAAGGTGTTAAAATTTTGGACCATCATGTATTATCCATCAATATAT 6216
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6217 GTAAATAACATTTATTTGTCCAGAATTTTCCAGAATCTGAAATACTTTTAAGGGCCATGCTTGTATTACTATAT 6290
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6291 TACTATATTATTTTGGATGAGAATAGTTTTAAAGTTGATCTCTGCCCTCTTAGAGAATTCTATCATTTTTTTGT 6364
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6365 TGTCTCATCACCGAGTTATAGCTATAAACTGCTTTTATTGACTCTGCTGTACCAGAAGTGTTGGATAAGTTTAG 6438
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6439 ATGTCTTTACTTTAAATGGCATTTTACTTCAAATATTTTTTGCGAGTTTTTATACCTGCTTTTTATAATTTCCT 6512
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6513 AGGATCTTTCTGTAGTGTCAACTGTTGCTCCTTTCTGAGGCTGCCAGCTTTAATTTTTCTTTTTCTTTTCTTTT 6586
Query 73 ------------ 72
Sbjct 6587 TTTTTTTTAATA 6598
