Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_10261
Subject:
XR_002958353.1
Aligned Length:
5348
Identities:
64
Gaps:
5276

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACTATATTGAAACATTACAACCATCTTTTGATGGCAACACCCTGAGGACCTCCCTTTTCCAGATGGGGAAACTG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGGCCCAGAATTGCTAAGTGGCTTGCTTGAGTTGACACAGGGAGCTCCAGGACTCACCCTCAGCTGAGCCACCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCCGGGAGCATGCCTCTGCGCCACTGGGGGATGGCCAGGGGCAGTAAGCCCGTTGGGGATGGAGCCCAGCCCAT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGCTGCCATGGGAGGCCTGAAGGTGCTTCTGCACTGGGCTGGTCCAGGCGGCGGGGAGCCCTGGGTCACTTTCA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GTGAGTCATCGCTGACAGCTGAGGAAGTCTGCATCCACATTGCACATAAAGTTGGTATCACTCCTCCTTGCTTC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AATCTCTTTGCCCTCTTCGATGCTCAGGCCCAAGTCTGGTTGCCCCCAAACCACATCCTAGAGATCCCCAGAGA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TGCAAGCCTGATGCTATATTTCCGCATAAGGTTTTATTTCCGGAACTGGCATGGCATGAATCCTCGGGAACCGG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CTGTGTACCGTTGTGGGCCCCCAGGAACCGAGGCATCCTCAGATCAGACAGCACAGGGGATGCAACTCCTGGAC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CCAGCCTCATTTGAGTACCTCTTTGAGCAGGGCAAGCATGAGTTTGTGAATGACGTGGCATCACTGTGGGAGCT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GTCGACCGAGGAGGAGATCCACCACTTTAAGAATGAGAGCCTGGGCATGGCCTTTCTGCACCTCTGTCACCTCG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CTCTCCGCCATGGCATCCCCCTGGAGGAGGTGGCCAAGAAGACCAGCTTCAAGGACTGCATCCCGCGCTCCTTC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CGCCGGCATATCCGGCAGCACAGCGCCCTGACCCGGCTGCGCCTTCGGAACGTCTTCCGCAGGTTCCTGCGGGA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CTTCCAGCCGGGCCGACTCTCCCAGCAGATGGTCATGGTCAAATACCTAGCCACACTCGAGCGGCTGGCACCCC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GCTTCGGCACAGAGCGTGTGCCCGTGTGCCACCTGAGGCTGCTGGCCCAGGCCGAGGGGGAGCCCTGCTACATC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CGGGACAGTGGGGTGGCCCCTACAGACCCTGGCCCTGAGTCTGCTGCTGGGCCCCCAACCCACGAGGTGCTGGT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GACAGGCACTGGTGGCATCCAGTGGTGGCCAGTAGAGGAGGAGGTGAACAAGGAGGAGGGTTCTAGTGGCAGCA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GTGGCAGGAACCCCCAAGCCAGCCTGTTTGGGAAGAAGGCCAAGGCTCACAAGGCAGTCGGCCAGCCGGCAGAC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  AGGCCGCGGGAGCCACTGTGGGCCTACTTCTGTGACTTCCGGGACATCACCCACGTGGTGCTGAAAGAGCACTG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TGTCAGCATCCACCGGCAGGACAACAAGTGCCTGGAGCTGAGCTTGCCTTCCCGGGCTGCGGCGCTGTCCTTCG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TGTCGCTGGTGGACGGCTATTTCCGCCTGACGGCCGACTCCAGCCACTACCTGTGCCACGAGGTGGCTCCCCCA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CGGCTGGTGATGAGCATCCGGGATGGGATCCACGGACCCCTGCTGGAGCCATTTGTGCAGGCCAAGCTGCGGCC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CGAGGACGGCCTGTACCTCATTCACTGGAGCACCAGCCACCCCTACCGCCTGATCCTCACAGTGGCCCAGCGTA  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GCCAGGCACCAGACGGCATGCAGAGCTTGCGGCTCCGAAAGTTCCCCATTGAGCAGCAGGACGGGGCCTTCGTG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CTGGAGGGCTGGGGCCGGTCCTTCCCCAGCGTTCGGGAACTTGGGGCTGCCTTGCAGGGCTGCTTGCTGAGGGC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CGGGGATGACTGCTTCTCTCTGCGTCGCTGTTGCCTGCCCCAACCAGGAGAAACCTCCAATCTCATCATCATGC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GGGGGGCTCGGGCCAGCCCCAGGACACTCAACCTCAGCCAGCTCAGCTTCCACCGGGTTGACCAGAAGGAGATC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  ACCCAGGGACCGTGGGCAGGAGCTACGAGTGGTGCTCAAAGTGCTGGACCCTAGTCACCATGACATCGCCCTGG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  CCTTCTACGAGACAGCCAGCCTCATGAGCCAGGTCTCCCACACGCACCTGGCCTTCGTGCATGGCGTCTGTGTG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  CGCGGCCCTGAAAATATCATGGTGACAGAGTACGTGGAGCACGGACCCCTGGATGTGTGGCTGCGGAGGGAGCG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GGGCCATGTGCCCATGGCTTGGAAGATGGTGGTGGCCCAGCAGCTGGCCAGCGCCCTCAGCTACCTGGAGAACA  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  AGAACCTGGTTCATGGTAATGTGTGTGGCCGGAACATCCTGCTGGCCCGGCTGGGGTTGGCAGAGGGCACCAGC  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  CCCTTCATCAAGCTGAGTGATCCTGGCGTGGGCCTGGGCGCCCTCTCCAGGGAGGAGCGGGTGGAGAGGATCCC  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  CTGGCTGGCCCCCGAATGCCTACCAGGTGGGGCCAACAGCCTAAGCACCGCCATGGACAAGTGGGGGTTTGGCG  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  CCACCCTCCTGGAGATCTGCTTTGACGGAGAGGCCCCTCTGCAGAGCCGCAGTCCCTCCGAGGTATGTCTAGGA  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  GACCCTTGGGCCCTCCCCGCAGTGGGGGCCCCTCCAAGAAATCCAGAGGACAGAATCAGAGCTCAAAGCTGCAT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  CCCTTCTGGCCTCGTGACTTCAAGTCTCTCTGGGCTACCAGCAGGTGGGCCACTCGCTGGGGCTCAATGTAGTC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  CCAGCCTTTTTAGGTCCTTGTGGAAGTCACTTGTGCCTGGCACACAGAAGGCAAGTAAGAGACTTGATTTCAGT  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TTTAGGCAGAGTGACCAGGGCAGCGATGGGAGACGCCCAGGCTGCAGAGTGGGGAAGAAGGGCTGAGGATGCGC  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  CTCACCCAGCAGTGGGGTCAGACAAGGCTTCCCAAAGGAGGTTCATGAGTGTGGTGGTTTTATTTTGAGACGAA  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  GTTCCACTCTAATTGCCCAGGCTGGAATGCAATGGCGTGATCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTC  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  AAGCGATTCTCCTGTCTCAGCCTCCCGAGTAGGGGGGATTACAGGCACATGCCACCACACCCGGCTAATTTTTG  3034

Query    1  --------------ATGGGGTTTCTCCATGTCGGTCAGGCTGGTCTGGAACTCCTGACCTCAGGTGATCCGCCC  60
                          ||||||||||...||.|.||||||||||||||..||||||||||||||||||||||||||
Sbjct 3035  TATTTTTTGTAGAGATGGGGTTTCATTATATTGGTCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCGCCC  3108

Query   61  ACCTCAGCCTCC--------------------------------------------------------------  72
            |||||.||||||                                                              
Sbjct 3109  ACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACAGTGCCCGGCCCCAGAAGAGGTTTTATCTAAG  3182

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3183  TGTAGAATTATGCCAACAAGCCTGGCTAGGAAGGGCAGCCTAGGCAGAGTGCATGGCCTGTGCAAAGGCTGAGG  3256

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3257  CTTCAGTGTATTAAGGAGCTGTGGTCTACAGGAGGGGCAGGAGGGAAGCTTGGGGCAGGAGGCTGACTGTGACA  3330

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3331  CTCCAGCTCTGCATAATCACTGGACCTGGGTCCCAGTCCTGGTTCTACGGCTGTGAGCACGTCCTCCCACTTTG  3404

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3405  TGGAGCCTCAGTTGCCTCATCTGTATAATGGAACTGATAAGAGCGGGCACCTGGCGGTCCACTCTGGGGACTTG  3478

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3479  ACTCTGCCTCTTGGGGAACGGGTTGGGGGCGAGGGGAGGATGTTGACTCCTCTGGGTCCCTTTCCCAACAGAAG  3552

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3553  GAGCATTTCTACCAGAGGCAGCACCGGCTGCCCGAGCCCTCCTGCCCACAGCTGGCCACACTCACCAGCCAGTG  3626

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3627  TCTGACCTATGAGCCAACCCAGAGGCCATCATTCCGCACCATCCTGCGTGACCTCACCCGGCTGCAGCCCCACA  3700

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3701  ATCTTGCTGACGTCTTGACTGTGAACCCGGACTCACCGGCGTCGGACCCTACGGTTTTCCACAAGCGCTATTTG  3774

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3775  AAAAAGATCCGAGATCTGGGCGAGGGTCACTTCGGCAAGGTCAGCTTGTACTGCTACGATCCGACCAACGACGG  3848

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3849  CACTGGCGAGATGGTGGCGGTGAAAGCCCTCAAGGCAGACTGCGGCCCCCAGCACCGCTCGGGCTGGAAGCAGG  3922

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3923  AGATTGACATTCTGCGCACGCTCTACCACGAGCACATCATCAAGTACAAGGGCTGCTGCGAGGACCAAGGTGGG  3996

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 3997  CGGGACCCGGCGAGTCCTAGAGACTTGAGGGGGCGTGGTTAGAGCGTGGGTGTGGCCTTGTGGGCGGGGCCAGT  4070

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4071  CTGGCCTAGCCAATTAGAGACTCTCAACCCCAGGCTGCAGTACGCGGTTCTTGGCATCTGGGTGAGCGTGGCTG  4144

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4145  GGCTGCCTCCTTCCCATCTGGGGGGTGCTACCTGCTGGGGCCAGGATGGACGGGAGCCACCAGCAGCTCCCTCA  4218

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4219  AGTGAGAATGGGGTTCTGGATGGGTCCATCCCACCTGAGAACTGGGTCTAGTGTGCGCGGGTCTTGGCCTTCCC  4292

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4293  TCCCGACCTTGGAGGGGCTCTGCTGGGCTCAAGGTAGGCGGTCCCCGGCCCGCCCTCTATCGTCCCCCACCGGG  4366

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4367  GCCGCCCCTCTCCGCGGCAGGCGAGAAGTCGCTGCAGCTGGTCATGGAGTACGTGCCCCTGGGCAGCCTCCGAG  4440

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4441  ACTACCTGCCCCGGCACAGCATCGGGCTGGCCCAGCTGCTGCTCTTCGCCCAGCAGATCTGCGAGGGCATGGCC  4514

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4515  TATCTGCACGCGCAGCACTACATCCACCGAGACCTAGCCGCGCGCAACGTGCTGCTGGACAACGACAGGCTGGT  4588

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4589  CAAGATCGGGGACTTTGGCCTAGCCAAGGCCGTGCCCGAAGGCCACGAGTACTACCGCGTGCGCGAGGATGGGG  4662

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4663  ACAGCCCCGTGTTCTGGTATGCCCCAGAGTGCCTGAAGGAGTATAAGTTCTACTATGCGTCAGATGTCTGGTCC  4736

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4737  TTCGGGGTGACCCTGTATGAGCTGCTGACGCACTGTGACTCCAGCCAGAGCCCCCCCACGAAATTCCTTGAGCT  4810

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4811  CATAGGCATTGCTCAGGGTCAGATGACAGTTCTGAGACTCACTGAGTTGCTGGAACGAGGGGAGAGGCTGCCAC  4884

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4885  GGCCCGACAAATGTCCCTGTGAGGTCTATCATCTCATGAAGAACTGCTGGGAGACAGAGGCGTCCTTTCGCCCA  4958

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4959  ACCTTCGAGAACCTCATACCCATTCTGAAGACAGTCCATGAGAAGTACCAAGGCCAGGCCCCTTCAGTGTTCAG  5032

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5033  CGTGTGCTGAGGCACAATGGCAGCCCTGCCTGGGAGGACTGGACCAGGCAGTGGCTGCAGAGGGAGCCTCCTGC  5106

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5107  TCCCTGCTCCAGGATGAAACCAAGAGGGGGATGTCAGCCTCACCCACACCGTGTGCCTTACTCCTGTCTAGAGA  5180

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5181  CCCCACCTCTGTGAACTTATTTTTCTTTCTTGGCCGTGAGCCTAACCATGATCTTGAGGGACCCAACATTTGTA  5254

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5255  GGGGCACTAATCCAGCCCTTAAATCCCCCAGCTTCCAAACTTGAGGCCCACCATCTCCACCATCTGGTAATAAA  5328

Query   73  --------------------  72
                                
Sbjct 5329  CTCATGTTTTCTCTGCTGGA  5348

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.