Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_10577
- Subject:
- NR_002319.2
- Aligned Length:
- 3802
- Identities:
- 1401
- Gaps:
- 2292
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGCCGGGTTGGGCGATTAACAGGCGGTGGCTAGGGAGGACGGAGAGGGGGCGTTTGCTCCTCTGGGACTTTTCA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGCCTCGTTTTTTTTTTCAGATGTGGCTTGGTCTGGACGCAAGGTCCCAGCAGCCAGCTTAAGCTTACTCTTCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTGAAAGGGGAAAGTATCCCCTGTGGAAAGCAGTTAAACTTGTGGAGGGGGTGCGAGACGTGAGTTCTCCCCCA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGCCAGGCGAATGGTGTGGACTTGAGCTGGTCCAGCAGCCGGCTCGACTTGTCTGAGGGAGCCCTGGAGGGGGC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGGGAGGGGGCCCACAGAACGTGGGTTCTATAAAGAGACATTGGGAAGATTCGATTCCGAGAAGAGGAAGAGCC 370
Query 1 ---------------------------------------------ATGGCGTCGGCCTCCTCCCAACCGTCGTT 29
||||||||||||||||||...||||.||.
Sbjct 371 GGATTGAAAGAGAGCCAGGCCCTTGAGGGGGAGGGGGCTGCCAAGATGGCGTCGGCCTCCTCCGGGCCGTTGTC 444
Query 30 GGCGGTCGGTTTTTCATCCTTTGATCCCGGGGCCCCTTCCTGTACCGCATCCTCAGCATCTGGAATCTTGAGCC 103
..||||||||||||| |||.|||||||||.||.|||||||||||||.|.||||||||||||||||||..|||.|
Sbjct 445 TTCGGTCGGTTTTTC-TCCGTTGATCCCGCGGTCCCTTCCTGTACCTCGTCCTCAGCATCTGGAATCAAGAGTC 517
Query 104 CCACGGCATCTGAGGTGCCTTATGCCTCTGGCATGCCCATCAAGAAAACAGGCCATCGAGGTGTCGATTCCTCA 177
|||.||||||||||||||||||||||||||||||||||||||||||||.|||||||.||.||||.|||||||||
Sbjct 518 CCATGGCATCTGAGGTGCCTTATGCCTCTGGCATGCCCATCAAGAAAATAGGCCATAGAAGTGTTGATTCCTCA 591
Query 178 GGAGAGACAACATATAAAAAGACAACCTCAACAGCCTTGAAAGGTGCCATCCAGTTAGGCATTACTTACACTGT 251
|||| .||||||||||.||||||||||||||||||||||||||||||||||..|||||||
Sbjct 592 GGAG---------------GGACAACCTCATCAGCCTTGAAAGGTGCCATCCAGTTAGGCATTACCCACACTGT 650
Query 252 GGGGAGCCTGAGTACCAAACCAGAGCGTGATGTCCTCATGCAAGATTTCTACGTGGTGGAGAGTATCTTCTTCC 325
|||||||||||||||||||||||||.|||||||||||||||||||||||.||.|||||||||||||||||||.|
Sbjct 651 GGGGAGCCTGAGTACCAAACCAGAGAGTGATGTCCTCATGCAAGATTTCCACATGGTGGAGAGTATCTTCTTTC 724
Query 326 CCAGTGAAGGGAGCAACCTGACCCCTGCTCATCACTACAATGCCTTCCGTTTCAAGACCTATGCGCCGGTTGCC 399
||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||.||.||||||
Sbjct 725 CCAGTGAAGGGAGCAACCTGACCCCTGCTCATCACTACAATGCCTTTCGTTTCAAGACCTATGCACCTGTTGCC 798
Query 400 TTCCGCTACTTTCGGGAGCTATTTGGTATCCCGCCCGATGATTACTTGTGCTCCCTCTGCAGTGAGCCGCTGAT 473
|||||||||||..||||||||||||||||||.|||||||||||||||||..|||||||||||||||||||||||
Sbjct 799 TTCCGCTACTTCTGGGAGCTATTTGGTATCCGGCCCGATGATTACTTGTATTCCCTCTGCAGTGAGCCGCTGAT 872
Query 474 TGAACTCTGTAGCTCTGGAGCTAGTGGTTCCCTGTTCTATGTGTCCAGCGACGATGAACTCATTATTAAGACAC 547
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||..|||||.||||||||.
Sbjct 873 TGAACTCTGTAGCTCTGGAGCTAGTGGTTCCCTGTTCTATGTGTCCAGCGACGATGAGTTCATTGTTAAGACAG 946
Query 548 TCCAACATAAAGAGGCGGAGTTTCTGCAGAAGCTGCTTCCAGGATACTACTTGAACCTCAGCCAGAACCCTCGG 621
|||.|||||||||.||||||||||||||||||||||||||||||||||||.|.|||||||.|||||||||||||
Sbjct 947 TCCGACATAAAGAAGCGGAGTTTCTGCAGAAGCTGCTTCCAGGATACTACATAAACCTCAACCAGAACCCTCGG 1020
Query 622 ACTTTGCTGCCTAAATTCTTTGGACTGTACTGTGTGCAGACAGGTGGCAAGAACATTCGGATTGTGGTGATGAA 695
|||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ACTTTGCTGCCTAAATTCTATGGACTGTACTGTGTGCAGACAGGTGGCAAGAACATTCGGATTGTGGTGATGAA 1094
Query 696 CAATCTTTTACCAAGATCCGTCAAAATGCATATCAAATATGACCTCAAAGGCTCAACCTACAAACGCCGGGCTT 769
||||||||||||||||||.||.||||||||||||||||||||||||||||||||||||||||..||.|||||||
Sbjct 1095 CAATCTTTTACCAAGATCGGTAAAAATGCATATCAAATATGACCTCAAAGGCTCAACCTACAGGCGGCGGGCTT 1168
Query 770 CCCAGAAAGAGCGAGAGAAGCCTCTTCCCACATTTAAAGATCTAGACTTCTTACAAGACATCCCTGATGGTCTT 843
||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||
Sbjct 1169 CCCAGAAAGAGCGAGAGAAGCCTCTTCCCACATTTAAAGACCTAGACTTCTTACAAGACATCCCTGATGGTCTT 1242
Query 844 TTTTTGGATGCTGACACGTACAATGCTCTCTGTAAGACCCTGCAGCGTGACTGTTTGGTGCTGCAGAGCTTCAA 917
|||||||||||||||..|.||||.||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 TTTTTGGATGCTGACGTGCACAACGCTCTCTGTAAGACCCTGCAGCGTGACTGTTTGGTGCTGCAGAGCTTCAA 1316
Query 918 GATAATGGACTATAGCCTCTGGCTGTCAATCCACAATATAGATCATGCACAACGAGAGCCCTTAAGCAGCGACA 991
|||||||||.||||||||||.|.||||||||||.||||||||||||||||||||||||||||||||||||||.|
Sbjct 1317 GATAATGGATTATAGCCTCTTGATGTCAATCCATAATATAGATCATGCACAACGAGAGCCCTTAAGCAGCGAAA 1390
Query 992 CTCTTCAAGTGTCAATCGACACTCAAAGACTGGCTCCCCAAAAGGCTCTGTATTCCACAGCCATGGAATTCATC 1065
| .|||...|||.|.||.||||.|||||..||.||||||||||||||||||||||||||||||||||.||||
Sbjct 1391 C---ACAATACTCAGTTGATACTCGAAGACCAGCCCCCCAAAAGGCTCTGTATTCCACAGCCATGGAATCCATC 1461
Query 1066 CAGGGAGAGGCTCGGCTGGGCGACACCATGGAGGCCGATGACCATATGGGTGGCATCCCTGCTCAGAATAGTAA 1139
||||||||||||||.|.|||.|.||||||||||.||||||||||||||||||||||||||||.|.|||||||||
Sbjct 1462 CAGGGAGAGGCTCGACGGGGTGGCACCATGGAGACCGATGACCATATGGGTGGCATCCCTGCCCGGAATAGTAA 1535
Query 1140 AGGGGAAAGGCTTCTGCTTTATATTGGCATCATTGACATTCTACAGTCTTACACGTTTCTTAAGAAGTTGGAGC 1213
|||||||||||||||||||||||||||||||||||||||||||||||||||||.||||.|||||||||||||||
Sbjct 1536 AGGGGAAAGGCTTCTGCTTTATATTGGCATCATTGACATTCTACAGTCTTACAGGTTTGTTAAGAAGTTGGAGC 1609
Query 1214 ACTCTTGGAAAGCCGTGGTACATGATGGGGACGCTGTCTCAGTGCATCGCCCAGGCTTCTACGCTGAACGGTTC 1287
||||||||||||||.||.|||||||.||.|||.||||||||||||||||||||||||||||.||||||.|||||
Sbjct 1610 ACTCTTGGAAAGCCCTGATACATGACGGAGACACTGTCTCAGTGCATCGCCCAGGCTTCTATGCTGAATGGTTC 1683
Query 1288 CAGCACTTCATGTGCAACGCAGTATTTAAGAAGATCCCCTTGAAGCCTTCTCCTTCCAAAAAGTTTCGGTCTGG 1361
||||.|||||||||||||.|.||||||||||||||.||||||||||||||||||||||||||..||||||||||
Sbjct 1684 CAGCGCTTCATGTGCAACACGGTATTTAAGAAGATTCCCTTGAAGCCTTCTCCTTCCAAAAAACTTCGGTCTGG 1757
Query 1362 CTTATCTTTCTCTCTGCATACGGGCTCCAGTGGCAACTCCTGCATTACTTACCAGCCACTGGTCTCTGAGGAAC 1435
||.|||||||||||.||...|.||||||||||||||||||||||||||||||||||||.|||||||||.|||||
Sbjct 1758 CTCATCTTTCTCTCAGCGAGCAGGCTCCAGTGGCAACTCCTGCATTACTTACCAGCCATTGGTCTCTGGGGAAC 1831
Query 1436 ACAAGTCACAAGTG---ATAAAGGTGCAAGTGGAGCCAGGTGTTCACCTTGGTCGTTCTGATGTTTTACCTCAG 1506
|||||.|||||||| |.|||||.|.||||||||||||||||||||||||||.||.|||||||||||||||||
Sbjct 1832 ACAAGGCACAAGTGACAACAAAGGCGGAAGTGGAGCCAGGTGTTCACCTTGGTTGTCCTGATGTTTTACCTCAG 1905
Query 1507 ACCTCAGAATCCACCTTTGGAGGAAATCAG-------------------------------------------- 1536
|| |||||||||||||||||||||
Sbjct 1906 AC-------TCCACCTTTGGAGGAAATCAGTGAGGGCTCACCTACTCCTGACCCCAGTTTCTCACCTCTAGTTG 1972
Query 1537 -------------------------------------------------------------------------- 1536
Sbjct 1973 AAGAGACTTTGCAAATGCTAACTACAAGTGTGGACAACAGTGAGTATATGGGGAATGGAGACTTCTTACCCACC 2046
Query 1537 -------------------------------------------------------------------------- 1536
Sbjct 2047 CGGCTGCAGGCCCAGCAGGATGCTGTCAACACAGTTTGTCATTCAAAGACCCGCAGCAACCCTGAGAACAACGT 2120
Query 1537 -------------------------------------------------------------------------- 1536
Sbjct 2121 GGGCCTTATCACACTGGATAATGACTGTGAAGTGCTGACCACACTCACCCCAGACACTGGCCGTATCCTGTCCA 2194
Query 1537 -------------------------------------------------------------------------- 1536
Sbjct 2195 AGCTACATACTGTCCAACCCAAGGGCAAGATCACCTTCTGCATGGGCATCCACGTGGCCCATCTGGCTCTGAAG 2268
Query 1537 -------------------------------------------------------------------------- 1536
Sbjct 2269 CACCGACAAGGCAACAATCACAAGATCCGCATCATTGCCTTTGTGGGAAACCCGGTGGAGGACAATGAGAAGAA 2342
Query 1537 -------------------------------------------------------------------------- 1536
Sbjct 2343 TCTGGTGAAACTGGCTAAATGCCTCAAGAAGGAGAAAGTAAATGTTGACATTATCAATTTTGGGGAAGAGGAGG 2416
Query 1537 -------------------------------------------------------------------------- 1536
Sbjct 2417 TGAACACAGAAAAGCTGACAGCCTTTGTAAACACGTTGAATGGCAAAGATGGAACCGGTTCTCATCTGGTGACA 2490
Query 1537 -------------------------------------------------------------------------- 1536
Sbjct 2491 GTGCCTCCTGGGCCCAGTTTGGCTGATGCTCTCATCAGTTTTCCGATTTTGGCTGGTGAAGGTGGTGCCATGAT 2564
Query 1537 -------------------------------------------------------------------------- 1536
Sbjct 2565 GGGTCTTGGTGCCAGTGACTTTGAATTTGGAGTAGATCCCAGTGCTGATCCTGAGCTGGCCTTGGTCCTTCGTG 2638
Query 1537 -------------------------------------------------------------------------- 1536
Sbjct 2639 TATTTATGGAAGAGCAGCGGCAGCGGCAGGAGGAGGAGGCCCGGCAGGCAGCTGCAGCTTCTGCTGCTGAGGCC 2712
Query 1537 -------------------------------------------------------------------------- 1536
Sbjct 2713 GGGATTGCTACGACTGGGACTGAAGACTCAGACGATGCCCTGCTGAAGATGACCATCAGCCAGCAAGAGTTTGG 2786
Query 1537 -------------------------------------------------------------------------- 1536
Sbjct 2787 CCACACTGGGCTTCCTGACCTAAGCAGTATGACTGAGGAAGAGAAGATTGTTTGTGCCATGCAGATGTCCCTGC 2860
Query 1537 -------------------------------------------------------------------------- 1536
Sbjct 2861 AGGGAGCAGAGTTTGGCCTGGCAGAATCAGCAGACATTGATGCCAGCTCAGCCATGGACACATCTGAGCCAGCC 2934
Query 1537 -------------------------------------------------------------------------- 1536
Sbjct 2935 AAGGAGGAGGATGATTACGACGTGATGCAAGACCCTGAGTTCCTTCAGAGTGTCCTAGAGAACCTCCCAGGTGT 3008
Query 1537 -------------------------------------------------------------------------- 1536
Sbjct 3009 GGATCCCAACAATGAAGCCATTCGAAATGCTGTGGGCTCCCTGGCCTCCCAGGCCACCAAGGACAGCAAGAAGG 3082
Query 1537 -------------------------------------------------------------------------- 1536
Sbjct 3083 ACAAGAAGGAGGAAGACAAGAAGTGAGACTGGAGGGAAAGGGTAGCTGAGCCTGCTCAGGGGACTGCATGGGAA 3156
Query 1537 -------------------------------------------------------------------------- 1536
Sbjct 3157 GCACGGAATATAGGGTTAGATGTGTGTTATCTGTAATCATTATAGCCTAAATAAAGCTTGGCAAGATTTTTTCC 3230
Query 1537 -------------------------------------------------------------------------- 1536
Sbjct 3231 TTCTTTGCTTCAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 3304
Query 1537 -------------------------------------------------------------------------- 1536
Sbjct 3305 AAAGAAAAGAAAAGAAAAGAAAAGAAATCCTGATGCCTAAATCTGACCCCTTGAAATGCTGATGAGCTTCATCT 3378
Query 1537 -------------------------------------------------------------------------- 1536
Sbjct 3379 GAGCTGTGTGATCTCTCATGTGCAGCTAAGGTTGAGAACCACTAACATAAAATAATTCACATTAAAATCACCAG 3452
Query 1537 -------------------------------------------------------------------------- 1536
Sbjct 3453 GAAGCTTTAATAACATTTCAAATACTTGGACCCAACCCCTAAAGATTCTAATTTAATTGGCCTGGGACTCAGGT 3526
Query 1537 -------------------------------------------------------------------------- 1536
Sbjct 3527 ACTGATATTTTTCAAAAGCTCACAAGGTAATTCTGAAATTCAGCAAAAGTTGAGAACCACTATTCAGACTAAGT 3600
Query 1537 -------------------------------------------------------------------------- 1536
Sbjct 3601 GACTTGTCCAATGTCTCTGGGTGCATCAGACTTTACGGCCTTCCTTACACAGGGGTTGTGAATGAAATATGGCT 3674
Query 1537 -------------------------------------------------------------------------- 1536
Sbjct 3675 ATGGAAAGCAATTGTTGAGTAATATGTTATAAAGTATGGTGGTGATGATGATGATGACAATGATGACAATATTT 3748
Query 1537 ---------------------------- 1536
Sbjct 3749 CTTGAGTGCGTCCTATGCACCAGGCACT 3776
