Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_10619
- Subject:
- XR_001744749.2
- Aligned Length:
- 4199
- Identities:
- 200
- Gaps:
- 3981
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTTTTTTTCCGAACGCCCGCAGCAGGGTCAGAAGGGAGGTGGTCGCCCTCCGTCGTGGTCTGGCGTGTATTCCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGCCTTGGTGTCTGGCGGTTTCCGAGCGTTGGTGTCTGGCGGTTTCCGAGCGTTGGTGTCTTGGCGGTTTCCGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCGTTGGTGTCTGGCGGTTTCCGACCGTTGGTGTCTGGCACGCGCCACCCTCTCTTGCTTTGGTTGCGCCATGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGATGTACCAGACAAGAAGACAAGAAAATGATTTGAGGACAGCTTCAATCGCGGTGTGAAGAAGAAAGCAGCAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AACGACCACTGAAAACAACGCCGGTGGCAAAATATCCAAAGAAAGGGTCCCAAGCGGTACATCGTCATAGCCGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAACAGTCAGAGCCACCAGCCAATGATCTTTTCAATGCTGCGAAAGCTGCCAAAAGTGACATGCAGCACCGAGA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AGTCCGCGTGAAGTGCGTGAAGGCTCTGAAAGGGCTGTACGGTAACCGGGACCTGACCGCACGCCTGGAGCTCT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TCACTGGCCGCTTCAAGGACTGGATGGTTTCCATGATCATGGACAGAGAGTACAGTGTGGCAGTGGAGGCCGTC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGATTACTGATACTTATCCTTAAGAACATGGAAGGGGTGCTGATGGACGTGGACTGTGAGAGCGTCTACCCCAT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGTGTAGGCCTCTAATTGAGGCCTGGCCTCTGCTGTGGGTGAATTTCTGTACTGGAAACTTTTCTACCCTGAGT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GCGAGATAAGAACGATGGGTGGAAGAGAGCAACGCCAGAGCCCAGGTGCCCAGAGGACTTTCTTCCAGCTTCTG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CTGTCCTTCTTTGTGGAGAGCAAGCAAATCGCAGTCTTCTCCAGGCTGACAAGGCGAAGGGCATGGCTTCGAAG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TGCAAAAGAGTCATCATGAAACATCATGAATCATGAATCATTAGGCGTCTTCCCTTCGCTCCCCACTTTTTTTT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TTTTTTTTTTGAGACTGAGTCTCGCTCTGTTGCCCAGGCTGGAGTACAGTGGTGCGATCTTGGCTCACTGCAAC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCGTAGCCTCCTGAGTAGCTGGGATTACAGGTCCCCGCCACCA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CACCTGGCTAATTTTCTTATTTATTTATTTATTTTTAGTAGAGATGGGGTTTTGCCATGTTGGCCAGGCTGGTC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TCGAACTCCTGACCTCAAGTGATCCACCTGCTTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTAAGCCATTGC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ACCCAACTCACTCCCCACCTTAAAACCAAAAGCGCTCTGGCTCTCAATGGAGACATCAAGCCCTCCCTGCCCCT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TCTCCCTCCCCTTTCAGAGAATCTCCAGGAATTTCTGCCATTGTGCAGGGAGCAATTGAAAAATCAGTTAGTTC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AGCTGGGTGCAGTGGCTCATGTCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCACCTGAGGCCAG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GAGTTGGAGACCAGCCTGGCCAGCACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TGATGGGCACCTGTAATCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGTGGAGCTT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GCAGTGAGCCGAGACTGCAGCATTGCACTCCAGCCTGCGCAACAAGAGTGAAACTGTCTCAAAAAACAAAACAA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AACAAAACACAAAAAGAAAGAAAAAAGGAAAAATCAGTTAGTTCGATTATTAGAAGACTAGATTATTGCTCAGC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AGTAACCACTCCTTTCCCACAAACTCCCCTCTCTAGGAGGAATGTACCTCCCCACCCATTCCTGTTAGGCTTGG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CCAGGTGAATCGCTTTGGCCAATAGAATGTAACTGACAAGGTGAGCAGAGATTTGCAGTGGGCTTGTGCTTGGT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GCTGGTCCTCCGGGGCTCCTGCCTTTAGCCAGGGGAAGCACACTCCCCAGCCCCTCCTTAGCCCTCTGGCCCTG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GGGAGAATGAGAGGCATGTGGCACAGTCCTGGACCCAGCCGTGGCTGGGAGCAAGCCTGGAAGCTTGAGCGAGA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GATAAATGCTTGGTCTTTTTGTTTGAGACTAAGTCTCGCTCTATCGCCCAGGCTGGAGTGCAGTGTGGCACAAT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CTCAGCTCATTGCAACCTCCACCTCCCAGGTTCAAGCTATTCTCCTGCTTCAGCCTCCCAAGTAGCTGGGACTA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CAGCCAAATTGGAAGACCCACTTCTCTGGACTGGATGCTGCATTGAATTGAGCAAAGGAACTGAGTGCCCGGGG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AGCTCAAAGGGAAGCAGCCCAGCCTTCCTTCCGGGGCAGAGCAGTGGTGGGGACCTGTTTCCAGCTGCTTGTGC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CCCCCACTTCATGGAGGAGGGACCAGGGATCCTCAGAGGAGAGGGTGATGTTTGACAGTGGCTGCCTGCCCTGA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AAATCGCCCTTGTCTGTCCAGCCTGGCCTGAATTTCACCCACATCAACCCACATGGGATACTTTATTTATTTAT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TTATCTATTTATTTATTTATTTATTTATTTTAGAGCCAGGGTCTCACCCTGTGGCCCAGGCTGGAGTGCCGTGG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TGCTATCATAGCTCACTGCAGCCTCAAACTCCTGGGCTCAAGTGATCCTCCCGCCTCAGCCTCCAGAGTAGCTG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GGACTACAGGAACACACCACTGTGCCTGGCTTATTTTTCTTTTTTTTTTTGGTAGAGATGGGGGTCTCTCTATG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TTGCCCAGGCTGGTCTCAAACTCCTGGCCTCAAGTGATCCTCCTGCCTCGGCCTCCCAAAGTACTGGGATTACA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GAATCGGCTCCCAGACACCTGCCACTCGTGAATGCATCTGATAAACTCACTCACACTGAGGCCTTGGGGACTGA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GAGTGCGATGACATGGATCCTGCGGACAAACCGCCCCAGGGCGTACCTAGCACCGAAGCATCAGGCGCCACTAG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GTCTCCAGCTCCTTCTCGGATGACGTCCTTCAGCACGCCCCGGTCCCCCGAGATGTCCAGCATCCTCTGACTTA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 ACCGCTCGTACAGGGACTGATGGAGAATGAAAGCCAGGCCTCAGAGCCGCAGACCCACCCGGCCACCCCTCAGC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 GTCTACGCCCCCACGTCTGGGCCCTCACCTGGCCGGGGGCGTCGTCCCCTTCCAGGACTCCCTGGTTTAACGCG 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 CTTCCCCCCATGTCCTAGCTGCCCTCCCTGTGGCGTGAGCCTTCGGCCTGGTGCGCCCCGCTGCCCTTCCTGGC 3256
Query 1 --------------------------------ATGCCCGGCAGACCCCTACCGACGGCGGCATTCCATTCTGGG 42
||||||||||||||||||||||||||||||||||||||||||
Sbjct 3257 TGTGACTCTGGTGGGGTTCCGAAGGCCCCTTTATGCCCGGCAGACCCCTACCGACGGCGGCATTCCATTCTGGG 3330
Query 43 GCCACGAGGAGGCACTCATCGTTTCGTTCCAACCGCCGCCAACGGCCCTGGCCCTCGCGAGCTCTGGAACTACA 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3331 GCCACGAGGAGGCACTCATCGTTTCGTTCCAACCGCCGCCAACGGCCCTGGCCCTCGCGAGCTCTGGAACTACA 3404
Query 117 GAGGTCGCACG---------GTGAGTTGCCAGG-TG-----------TGGCCCGTAATCGGAGC---------- 159
||||||||||| .|||| .||||| || ||| |||..|||
Sbjct 3405 GAGGTCGCACGAGGCTCGCTCTGAG--CCCAGGCTGGAGTTCAGTGATGG------ATCTCAGCTCACTGCAGC 3470
Query 160 -------------GCACAAAACAT------------------------GATGGG-----ACACGTAACGGGACC 191
||.|||.|.|| |.|||| |.|||| |.|||
Sbjct 3471 CGCCACCTCCTGGGCTCAAGAGATCCTCCTGCCTCGGCCTCCCAAGTAGCTGGGATTACAGACGT----GCACC 3540
Query 192 ACACAGGGCACATTGGGC---------------------ACTTGCAGG---------------------GGCGC 223
|| || |||.|| || |.||||.|| .|| |
Sbjct 3541 AC-CA-GGCCCA----GCTAATTTATTTTTTAGTTTTTAATTTGCTGGTAAGATGGTTTGTAGCTTTGTTGC-C 3607
Query 224 GAGG---------------TGGCGGCACG--------------------------------------------- 237
.||| ||||..||.|
Sbjct 3608 TAGGCTGGTCTTGAACTCCTGGCTTCAAGCGATCCTCCAGTCTTGACCTCCCAAAGTGCTGGGATTATAGGCGT 3681
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3682 AGGCTACAGCCAACTTTCAATACTGCCCCATTGGGGGTTACGTTTCCAACACATGAAATTAGGAGGATACATTC 3755
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3756 AAACCACAGCAGTATATTATGACCATAATATTCATTAACTGTGTAACAGGCTGGGCGCGGTGGCTCACACCTGT 3829
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3830 AATCCCAGCACTTTGGGAGACCAGAGTGGGTAGATCACTCGAGGTCAGGAGTTTGAGACCAGCCTGGCCCACAT 3903
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3904 GATGAAACCGCCTCTCTACTAAAAATACAAAAAATTAGCCGGTGTGGTGGCAGGCGCCTGTAACCTCAGCTACT 3977
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3978 TGGGAGGCTGAGGCAGGAGAATCACTTGAATCCGGGAGGTGGAGGTGGCAGTGAGCCTGATTGCACCACTGCAC 4051
Query 238 -------------------------------------------------------------------------- 237
Sbjct 4052 TCCAGCCTGGGCAACAAGAGCAAAACTCTGTCTCAATAAACAAACAAACAAACAAAACCTGTATAACAGAGTGT 4125
Query 238 ------------------------------------------------------- 237
Sbjct 4126 CATTGAATTTCTAAACGTTGAAAGACTTCACATTAAAAAAAAACTCACAATTTAA 4180
