Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_10630
Subject:
NM_001146264.3
Aligned Length:
1806
Identities:
515
Gaps:
1248

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCGAGCGCATCATGGCGATTGAAGGTGGAGAGAGAACCTGTGGAGTACATGAACTTATCTGTATTAGAAAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GATAGGGTATTTCTCTGTGGCCAGGCTGGAGTACAGTGGCACCATCTTGGCTCACTGCAACTTCCGCCTCCTGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GTTCAAACGATTCTTCTGCCTCAGCATCCCAAGTAACTGGGACTACAGTATCTCCAGAGGCAGTTGGATTTTTG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TCAGCTGTTGGGGTGTTTATTATCTTGATGCTGCTCCTTTTTCTCTATATTAATAAGAAGTTCTGTTTTGAAAA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TGTTGGCGGGTTTCCAGATCTTGGTTCAGAATACAGTACAAGGAAGAATTCACAAGATAAAATTTATAATTCCT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ACATGGACAAAGATGAGCATGGTTCATCCTCTGAAAGTGAAGATGAAGCGCTGGGTAAATATCATGAGGCCTTA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TCCAGAACACACAATTCCAGACTACCACTGGCAGATTCTAGACAAAGGAACTATGCTTGGGAAACAAGGCAGAA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ATACAGTCCTCTATCGGCAGAGTATGATGGATACAGTAGTGAAGCATCAATAGATGAAGGAAACTGCATTCAGA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GAATGAGAAGAACACCCCCGCTGGATGAATTGCAGCCACCACCATATCAGGATGACAGTGGTTCTCCCCATCTG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TCATGTACACCCTCAGAAATTGGGGACAGTAAATGTGAATTTTCCCACTGCAGCAACAGTCCAAGATGCTCATA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TAACAAGTGCCCAAGTGAAGGAAGCACAGGTCATGAAATAGAAAGTTTTCATAATAAAGGATATGAAGAAGATG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TTCCAAGTGACAGCACTGCAGTCCTGAGCCCTGAAGATATGTCAGCTCAAGGATCATCTTCGCAGCTTCCTAAA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CCTTTTGATCCTGAGCCAGAAGCTAAATATGGCACACTGGATGTGACTTTTGACTATGACTCACAAGAACAGAA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GCTTCTGGTAACAGTGACAGCTGTCACAGACATCCCAACATATAACAGGACAGGTGGCAACTCATGGCAAGTAC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  ACCTTGTTCTTCTACCTATAAAGAAACAGAGAGCAAAAACCAGCATCCAGAGAGGACCATGCCCTGTCTTCACA  1110

Query    1  -------------------ATGTTGGA---GGGCT------------TCCAGATCTTGGTTCAGA----ATACA  36
                               ||||||.|   |.|.|            |.|||.||  ||||.|||    ||...
Sbjct 1111  GAAACATTTAAATTTAATCATGTTGAATCTGAGATGATTGGAAATTATGCAGTTC--GGTTTAGACTGTATGGT  1182

Query   37  GTACA----AGGAACAA-------------------------------TTCACAAGAT--------------AA  61
            |||||    |.|||.||                               ||.||||.||              ||
Sbjct 1183  GTACATCGCATGAAAAAAGAAAAGATTGTGGGGGAAAAGATTTTTTATTTAACAAAATTGAATCTTCAAGGGAA  1256

Query   62  AATG--------------------------------------TGTCTGTGACTCCCAAATGAGTGTGTCAGAAA  97
            ||||                                      ||.||||||||||||||||||.||||||||||
Sbjct 1257  AATGTCATTGCCTGTGATATTGGAACCTTCTTACAATCATTCTGGCTGTGACTCCCAAATGAGCGTGTCAGAAA  1330

Query   98  TGTCTTGTAGTGAAAGTACATCCGCATGTCAGTCTCTCGAAGACGGGTCAGTTCCAGAAATTCTCATTAGCCTG  171
            ||||.||||||||||||||||||.|||||||||||||.|||.|.||.|||||||||||||||||.|||.|||||
Sbjct 1331  TGTCGTGTAGTGAAAGTACATCCTCATGTCAGTCTCTTGAACATGGCTCAGTTCCAGAAATTCTTATTGGCCTG  1404

Query  172  CTTTATAATGCCACAAATGGGAGACTATCAGCAGAAGTGATAAAAGGCAGCCACTTAAAAAATTGGGCAGCAAA  245
            ||||||||||||||||.|||.|||||||||||||||||||||||||||||||||||.|||||||.|||||||||
Sbjct 1405  CTTTATAATGCCACAACTGGAAGACTATCAGCAGAAGTGATAAAAGGCAGCCACTTCAAAAATTTGGCAGCAAA  1478

Query  246  CAGACCACCCAATACATATGTTAAGTTAACTCTACGGAAATCCACGGATCAAGAGATGTCCAAATGCAAGATAT  319
            |||||||||||||||||||||||||||||||||||.|||.||||.||.|||||||||||||||||||||||.||
Sbjct 1479  CAGACCACCCAATACATATGTTAAGTTAACTCTACTGAATTCCATGGGTCAAGAGATGTCCAAATGCAAGACAT  1552

Query  320  CCATCCGCAGAGGGCGGCCAAATCCAGTATACAAGGAAACTTTTGT-TTTCAAAGTGACCCTATTTCAGCTTTC  392
            |||||||||||||||.|||||||||||||||.|||||||||||||| |||| |||||.||||||||||||||||
Sbjct 1553  CCATCCGCAGAGGGCAGCCAAATCCAGTATATAAGGAAACTTTTGTCTTTC-AAGTGGCCCTATTTCAGCTTTC  1625

Query  393  TCATGTGACACTCATGCTGTCTGTGTATAACAAAAGCAGCATGAGAAGAA---AGATGATAGGCTGGATTTATT  463
            |.|||||||||||||.||||||||||||||||||.|||||||||.|||||   ||||||||||||||||||.||
Sbjct 1626  TGATGTGACACTCATACTGTCTGTGTATAACAAACGCAGCATGAAAAGAAAAGAGATGATAGGCTGGATTTCTT  1699

Query  464  TAGGTCTCAACAGCTCTGG---AGAAGAACTCAATCACTGGACTGAAATGAAAGAGTCAAAAGGACGGCAAGTA  534
            |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct 1700  TAGGTCTCAACAGCTCTGGAGAAGAAGAACTCAATCACTGGACTGAAATGAAAGAGTCAAAAGGACAGCAAGTA  1773

Query  535  CGTAGATGGCAGGCGTTGCTAGAGTCACGA  564
            .||||||||||.|||||||||||||||   
Sbjct 1774  TGTAGATGGCATGCGTTGCTAGAGTCA---  1800

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