Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_10690
Subject:
NM_001330611.3
Aligned Length:
3490
Identities:
2120
Gaps:
1352

Alignment

Query    1  ATGGGTGACATGACCAACAGCGACTTTTACTCCAAAAACCAAAGAAATGAGTCGAGCCATGGGGGCGAGTTCGG  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGGTGACATGACCAACAGCGACTTTTACTCCAAAAACCAAAGAAATGAGTCGAGCCATGGGGGCGAGTTCGG  74

Query   75  GTGCACAATGGAGGAGCTCCGCTCCCTCATGGAGCTGCGGGGCACTGAGGCTGTGGTCAAGATCAAGGAGACTT  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  GTGCACAATGGAGGAGCTCCGCTCCCTCATGGAGCTGCGGGGCACTGAGGCTGTGGTCAAGATCAAGGAGACTT  148

Query  149  ATGGGGACACCGAAGCCATCTGCCGGCGCCTCAAAACCTCACCTGTTGAAGGTTTGCCGGGCACCGCTCCAGAC  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  ATGGGGACACCGAAGCCATCTGCCGGCGCCTCAAAACCTCACCTGTTGAAGGTTTGCCGGGCACCGCTCCAGAC  222

Query  223  CTGGAAAAGAGAAAGCAAATTTTTGGGCAAAACTTTATACCTCCAAAGAAGCCAAAAACCTTCCTGCAGCTCGT  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CTGGAAAAGAGAAAGCAAATTTTTGGGCAAAACTTTATACCTCCAAAGAAGCCAAAAACCTTCCTGCAGCTCGT  296

Query  297  GTGGGAGGCGCTGCAGGACGTGACGCTCATCATCCTGGAGATTGCCGCCATCATCTCCCTGGGGCTGTCCTTCT  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GTGGGAGGCGCTGCAGGACGTGACGCTCATCATCCTGGAGATTGCCGCCATCATCTCCCTGGGGCTGTCCTTCT  370

Query  371  ACCACCCGCCCGGCGAGGGCAACGAAGGATGTGCGACGGCCCAGGGTGGGGCAGAGGATGAAGGAGAGGCAGAG  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  ACCACCCGCCCGGCGAGGGCAACGAAGGATGTGCGACGGCCCAGGGTGGGGCAGAGGATGAAGGAGAGGCAGAG  444

Query  445  GCAGGTTGGATCGAGGGGGCCGCCATTCTCCTCTCAGTTATCTGTGTGGTCCTGGTCACGGCCTTCAATGACTG  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GCAGGTTGGATCGAGGGGGCCGCCATTCTCCTCTCAGTTATCTGTGTGGTCCTGGTCACGGCCTTCAATGACTG  518

Query  519  GAGCAAAGAGAAACAGTTCCGGGGCCTGCAGAGCCGCATCGAGCAGGAACAGAAATTTACCGTGGTCCGGGCTG  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GAGCAAAGAGAAACAGTTCCGGGGCCTGCAGAGCCGCATCGAGCAGGAACAGAAATTTACCGTGGTCCGGGCTG  592

Query  593  GCCAGGTGGTGCAGATCCCTGTGGCTGAGATCGTGGTTGGGGACATAGCCCAGGTCAAATATGGTGACCTCCTC  666
            ||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GCCAGGTGGTCCAGATCCCTGTGGCTGAGATCGTGGTTGGGGACATAGCCCAGGTCAAATATGGTGACCTCCTC  666

Query  667  CCTGCCGACGGCCTCTTCATCCAGGGCAATGACCTCAAGATTGATGAAAGCTCCCTAACTGGAGAGTCTGACCA  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CCTGCCGACGGCCTCTTCATCCAGGGCAATGACCTCAAGATTGATGAAAGCTCCCTAACTGGAGAGTCTGACCA  740

Query  741  GGTGCGCAAGTCCGTGGACAAGGACCCCATGCTGCTGTCAGGAACCCACGTGATGGAGGGCTCAGGACGGATGT  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GGTGCGCAAGTCCGTGGACAAGGACCCCATGCTGCTGTCAGGAACCCACGTGATGGAGGGCTCAGGACGGATGT  814

Query  815  TGGTGACTGCTGTGGGTGTGAACTCTCAGACTGGCATCATCTTTACCCTCCTGGGGGCTGGTGGTGAAGAGGAA  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TGGTGACTGCTGTGGGTGTGAACTCTCAGACTGGCATCATCTTTACCCTCCTGGGGGCTGGTGGTGAAGAGGAA  888

Query  889  GAGAAGAAAGACAAAAAAGCCAAACAACAGGACGGGGCAGCCGCCATGGAGATGCAGCCCCTCAAGAGTGCCGA  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GAGAAGAAAGACAAAAAAGCCAAACAACAGGACGGGGCAGCCGCCATGGAGATGCAGCCCCTCAAGAGTGCCGA  962

Query  963  GGGCGGCGACGCTGACGACAGGAAGAAGGCCAGCATGCACAAGAAGGAGAAGTCCGTGCTGCAGGGCAAGCTCA  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GGGCGGCGACGCTGACGACAGGAAGAAGGCCAGCATGCACAAGAAGGAGAAGTCCGTGCTGCAGGGCAAGCTCA  1036

Query 1037  CCAAGCTGGCTGTGCAGATCGGGAAGGCGGGCTTGGTGATGTCAGCCATCACGGTGATCATCCTGGTGCTCTAC  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CCAAGCTGGCTGTGCAGATCGGGAAGGCGGGCTTGGTGATGTCAGCCATCACGGTGATCATCCTGGTGCTCTAC  1110

Query 1111  TTCACTGTGGACACCTTCGTGGTCAACAAGAAGCCGTGGCTGCCTGAGTGCACGCCCGTCTACGTGCAGTACTT  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TTCACTGTGGACACCTTCGTGGTCAACAAGAAGCCGTGGCTGCCTGAGTGCACGCCCGTCTACGTGCAGTACTT  1184

Query 1185  TGTCAAGTTCTTCATCATTGGCGTGACGGTGCTGGTGGTCGCCGTGCCCGAGGGGCTCCCTCTGGCCGTCACCA  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TGTCAAGTTCTTCATCATTGGCGTGACGGTGCTGGTGGTCGCCGTGCCCGAGGGGCTCCCTCTGGCCGTCACCA  1258

Query 1259  TCTCGTTGGCCTATTCGGTGAAGAAAATGATGAAGGACAACAATCTGGTACGCCACCTGGATGCCTGTGAGACC  1332
            |||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 1259  TCTCGTTGGCCTATTCGGTGAAGAAAATGATGAAGGACAACAACCTGGTACGCCACCTGGATGCCTGTGAGACC  1332

Query 1333  ATGGGCAATGCCACAGCCATCTGCTCAGACAAGACAGGCACGCTGACCACCAATCGCATGACAGTGGTACAGGC  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  ATGGGCAATGCCACAGCCATCTGCTCAGACAAGACAGGCACGCTGACCACCAATCGCATGACAGTGGTACAGGC  1406

Query 1407  CTATGTCGGCGACGTCCACTATAAAGAGATCCCCGACCCCAGCTCCATCAACACCAAGACCATGGAGCTGCTGA  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  CTATGTCGGCGACGTCCACTATAAAGAGATCCCCGACCCCAGCTCCATCAACACCAAGACCATGGAGCTGCTGA  1480

Query 1481  TCAATGCCATCGCCATCAACAGCGCCTACACCACCAAGATTCTGCCCCCAGAGAAGGAGGGCGCCCTGCCTCGG  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  TCAATGCCATCGCCATCAACAGCGCCTACACCACCAAGATTCTGCCCCCAGAGAAGGAGGGCGCCCTGCCTCGG  1554

Query 1555  CAGGTGGGCAACAAGACGGAGTGCGGCCTGCTGGGCTTCGTGCTGGACCTGAAGCAGGACTACGAGCCCGTGCG  1628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  CAGGTGGGCAACAAGACGGAGTGCGGCCTGCTGGGCTTCGTGCTGGACCTGAAGCAGGACTACGAGCCCGTGCG  1628

Query 1629  CAGCCAGATGCCAGAGGAGAAGTTGTACAAAGTGTACACCTTCAACTCCGTGCGCAAGTCCATGAGCACTGTCA  1702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  CAGCCAGATGCCAGAGGAGAAGTTGTACAAAGTGTACACCTTCAACTCCGTGCGCAAGTCCATGAGCACTGTCA  1702

Query 1703  TCAAGCTGCCCGACGAGAGCTTCCGCATGTACAGCAAGGGGGCTTCTGAGATCGTGCTCAAGAAGTGCTGCAAA  1776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  TCAAGCTGCCCGACGAGAGCTTCCGCATGTACAGCAAGGGGGCTTCTGAGATCGTGCTCAAGAAGTGCTGCAAA  1776

Query 1777  ATCCTCAATGGGGCGGGAGAGCCTCGTGTCTTCCGGCCCCGCGACCGGGACGAGATGGTAAAGAAGGTGATTGA  1850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  ATCCTCAATGGGGCGGGAGAGCCTCGTGTCTTCCGGCCCCGCGACCGGGACGAGATGGTAAAGAAGGTGATTGA  1850

Query 1851  GCCCATGGCTTGCGATGGGCTCCGCACTATCTGCGTGGCCTACCGCGACTTCCCCAGCAGCCCGGAGCCGGACT  1924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  GCCCATGGCTTGCGATGGGCTCCGCACTATCTGCGTGGCCTACCGCGACTTCCCCAGCAGCCCGGAGCCGGACT  1924

Query 1925  GGGACAATGAGAATGACATCCTCAACGAACTCACCTGCATCTGCGTGGTGGGCATCGAGGACCCGGTGCGGCCA  1998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  GGGACAATGAGAATGACATCCTCAACGAACTCACCTGCATCTGCGTGGTGGGCATCGAGGACCCGGTGCGGCCA  1998

Query 1999  GAGGTCCCAGAAGCCATCCGCAAGTGCCAGCGGGCAGGCAT----GT---------------------------  2041
            |||||||||||||||||||||||||||||||||||||||||    ||                           
Sbjct 1999  GAGGTCCCAGAAGCCATCCGCAAGTGCCAGCGGGCAGGCATCACGGTCCGCATGGTCACTGGCGACAATATCAA  2072

Query 2042  ----------------------------------ATCCA------GGA--------------------------  2049
                                              |||||      |||                          
Sbjct 2073  CACGGCTCGGGCCATCGCCATCAAGTGTGGCATCATCCATCCTGGGGAGGACTTTCTGTGCCTCGAGGGCAAGG  2146

Query 2050  ----------GAGGAACTGCATAACCA-AAGGGG-----TGACCAGCCCTCAGATGTGCTTATTGGATTCCAGT  2107
                      |||||.|.||  |||.| ||||||     |||.|||         |.||..||||         
Sbjct 2147  AGTTCAACAGGAGGATCCGC--AACGAGAAGGGGGAGATTGAGCAG---------GAGCGAATTG---------  2200

Query 2108  ACAAACGCCA-----CCAAAGC--CAGCCCACTGCT------CTCCT---------ACAAG------------G  2147
            ||||    .|     |||||||  |.|    .||||      |||||         |||||            .
Sbjct 2201  ACAA----GATCTGGCCAAAGCTGCGG----GTGCTGGCTCGCTCCTCCCCAACGGACAAGCATACCCTGGTTA  2266

Query 2148  AAGGAAAGAT----------------------CTGCACGTG---------------------------------  2166
            ||||.|..||                      |.|||.|||                                 
Sbjct 2267  AAGGCATCATCGACAGCACACACACTGAGCAGCGGCAGGTGGTGGCCGTGACGGGGGACGGGACCAACGACGGG  2340

Query 2167  --------------------------------------------------------------------------  2166
                                                                                      
Sbjct 2341  CCTGCACTCAAGAAGGCCGACGTGGGCTTCGCCATGGGCATCGCAGGCACTGACGTGGCCAAGGAGGCCTCAGA  2414

Query 2167  --------------------------------------------------------------------------  2166
                                                                                      
Sbjct 2415  CATCATCCTGACAGACGACAATTTCAGCAGCATCGTCAAGGCAGTGATGTGGGGCCGCAACGTCTATGACAGCA  2488

Query 2167  --------------------------------------------------------------------------  2166
                                                                                      
Sbjct 2489  TCTCCAAATTCTTGCAGTTCCAGCTCACCGTCAACGTGGTGGCCGTGATTGTGGCCTTCACAGGCGCCTGCATC  2562

Query 2167  --------------------------------------------------------------------------  2166
                                                                                      
Sbjct 2563  ACGCAGGACTCCCCTCTGAAGGCCGTGCAGATGCTCTGGGTGAACCTCATCATGGACACGTTTGCCTCGCTGGC  2636

Query 2167  --------------------------------------------------------------------------  2166
                                                                                      
Sbjct 2637  ACTGGCCACTGAGCCGCCCACGGAGACCCTGCTGCTGAGGAAGCCGTACGGCCGCAACAAGCCGCTCATCTCCA  2710

Query 2167  --------------------------------------------------------------------------  2166
                                                                                      
Sbjct 2711  GGACCATGATGAAGAACATCCTGGGCCATGCTGTCTACCAGCTTGCCCTCATCTTCACCCTGCTCTTTGTTGGC  2784

Query 2167  --------------------------------------------------------------------------  2166
                                                                                      
Sbjct 2785  GAGAAGATGTTCCAGATCGACAGCGGGAGGAACGCGCCCCTGCATTCGCCACCCTCAGAACATTACACCATCAT  2858

Query 2167  --------------------------------------------------------------------------  2166
                                                                                      
Sbjct 2859  CTTCAACACCTTCGTCATGATGCAGCTCTTCAACGAGATCAACGCCCGCAAGATCCACGGCGAGCGCAATGTCT  2932

Query 2167  --------------------------------------------------------------------------  2166
                                                                                      
Sbjct 2933  TTGACGGCATCTTCCGGAACCCCATCTTCTGCACCATCGTGCTGGGCACCTTTGCCATCCAGATAGTGATCGTG  3006

Query 2167  --------------------------------------------------------------------------  2166
                                                                                      
Sbjct 3007  CAGTTTGGAGGGAAGCCATTCAGCTGCTCTCCACTGCAGCTGGACCAGTGGATGTGGTGCATATTCATTGGGTT  3080

Query 2167  --------------------------------------------------------------------------  2166
                                                                                      
Sbjct 3081  AGGAGAGCTCGTTTGGGGCCAGGTCATCGCCACCATCCCGACCAGCAGACTCAAGTTCCTCAAGGAGGCAGGCA  3154

Query 2167  --------------------------------------------------------------------------  2166
                                                                                      
Sbjct 3155  GGCTCACACAGAAGGAGGAGATCCCGGAGGAGGAGCTCAACGAGGACGTGGAGGAGATCGACCACGCGGAGCGG  3228

Query 2167  --------------------------------------------------------------------------  2166
                                                                                      
Sbjct 3229  GAGCTGCGGCGGGGCCAGATCCTGTGGTTCCGAGGCCTGAATCGGATCCAGACACAGATTGAAGTAGTCAATAC  3302

Query 2167  --------------------------------------------------------------------------  2166
                                                                                      
Sbjct 3303  TTTCAAGAGCGGGGCCTCCTTTCAGGGGGCCCTGCGGAGACAGTCCTCGGTCACCAGCCAGAGCCAGGATGTAG  3376

Query 2167  --------------------------------------------------------------------------  2166
                                                                                      
Sbjct 3377  CCAATCTCTCTAGCCCTAGTCGCGTGTCGTTGTCCAATGCTCTTTCCTCTCCGACCAGCCTTCCTCCTGCTGCA  3450

Query 2167  ------------  2166
                        
Sbjct 3451  GCCGGGCAGGGC  3462

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