Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_10747
- Subject:
- NM_009948.2
- Aligned Length:
- 2319
- Identities:
- 1459
- Gaps:
- 621
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGCGGAAGCACACCAGGCAGTAGCTTTCCAGTTCACTGTGACCCCAGACGGGGTCGACTTCCGGCTTAGTCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGAGGCTCTGAGACACATCTACCTGTCTGGAATCAACTCCTGGAAGAAACGCCTTATTCGAATCAAGAATGGCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TCCTTAGGGGTGTGTACCCTGGCAGCCCCACCAGCTGGCTGGTTGTTGTCATGGCAACAGTTGGTTCCAACTAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGCAAGGTGGACATCTCCATGGGACTGGTCGATTGCATCCAGAGATGCCTCCCGGAAAGGTATGGCCACTTTGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GACCCCACAGACAGAGGCACTTCTCAGCATGGTCATCTTCTCCACCGGAGTCTGGGCGACAGGCATTTTCTTCT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TCCGACAAACCCTGAAGCTGCTGCTCTCCTACCACGGGTGGATGTTCGAGATGCACAGCAAGACCAGCCATGCC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ACCAAGATCTGGGCTATCTGTGTCCGTCTCCTGTCCAGCCGGCGGCCCATGCTCTACAGCTTCCAAACGTCACT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCCTAAGCTTCCTGTCCCCAGCGTGCCAGCCACAATTCACCGGTACTTGGATTCTGTGCGGCCCTTATTGGATG 592
Query 1 -----------------ATGGAGTTGCTGGCCAAAGAATTCCAGGACAAGACTGCCCCCAGGCTGCAGAAATAC 57
||||||....|||||||.|||||||||||||||||||||||||||||||||||||||
Sbjct 593 ATGAAGCATATTACCGCATGGAGACATTGGCCAAGGAATTCCAGGACAAGACTGCCCCCAGGCTGCAGAAATAC 666
Query 58 CTGGTGCTCAAGTCATGGTGGGCAAGTAACTATGTGAGTGACTGGTGGGAAGAGTACATCTACCTTCGAGGCAG 131
|||||||||||||||||||||||||.|||||||||||||||||||||||||||.||..|||||||.|||.||||
Sbjct 667 CTGGTGCTCAAGTCATGGTGGGCAACTAACTATGTGAGTGACTGGTGGGAAGAATATGTCTACCTCCGAAGCAG 740
Query 132 GAGCCCTCTCATGGTGAACAGCAACTATTATGTCATGGACCTTGTGCTCATCAAGAATACAGACGTGCAGGCAG 205
||||||.|||||||||||||||||||||||||.||||||..|||||||.||.|||||.|||.|.|||||.||||
Sbjct 741 GAGCCCCCTCATGGTGAACAGCAACTATTATGCCATGGATTTTGTGCTTATTAAGAACACAAATGTGCAAGCAG 814
Query 206 CCCGCCTGGGAAACATCATCCACGCCATGATCATGTATCGCCGTAAACTGGACCGTGAAGAAATCAAGCCTGTG 279
||||.||.||.||...|.|.|||||||||||||||||||||||.|||||||||||||||||.||||||||.||.
Sbjct 815 CCCGTCTAGGCAATGCCGTTCACGCCATGATCATGTATCGCCGCAAACTGGACCGTGAAGAGATCAAGCCGGTC 888
Query 280 ATGGCACTGGGCATAGTGCCTATGTGCTCCTACCAGATGGAGAGGATGTTCAACACCACTCGGATCCCGGGCAA 353
|||||||||||.||.|||||.|||||||||||||||||||||||||||||||||||.||.||.|||||.|||||
Sbjct 889 ATGGCACTGGGTATGGTGCCCATGTGCTCCTACCAGATGGAGAGGATGTTCAACACTACACGCATCCCAGGCAA 962
Query 354 GGACACAGATGTGCTACAGCACCTCTCAGACAGCCGGCACGTGGCTGTCTACCACAAGGGACGCTTCTTCAAGC 427
.||.|||||..|||||||||||||||||||.|||.||||||||||||||||||||||.||.||||||||||||.
Sbjct 963 AGAGACAGACTTGCTACAGCACCTCTCAGAGAGCAGGCACGTGGCTGTCTACCACAAAGGTCGCTTCTTCAAGG 1036
Query 428 TGTGGCTCTATGAGGGCGCCCGTCTGCTCAAGCCTCAGGATCTGGAGATGCAGTTCCAGAGGATCCTGGACGAC 501
|.|||||||||||||||.|.||.|||||||||||.|..||.||||||||||||||||||||.|||||.||||||
Sbjct 1037 TCTGGCTCTATGAGGGCTCGCGCCTGCTCAAGCCCCGAGACCTGGAGATGCAGTTCCAGAGAATCCTCGACGAC 1110
Query 502 CCCTCCCCACCTCAGCCTGGGGAGGAGAAGCTGGCAGCCCTCACTGCAGGAGGAAGGGTGGAGTGGGCGCAGGC 575
||.|||||||||||||||||||||||||||||||||||||||||.||||||||||||||.||||||||..||||
Sbjct 1111 CCTTCCCCACCTCAGCCTGGGGAGGAGAAGCTGGCAGCCCTCACCGCAGGAGGAAGGGTAGAGTGGGCAGAGGC 1184
Query 576 ACGCCAGGCCTTCTTTAGCTCTGGAAAGAATAAGGCTGCCT-TGGAGGCCATCGAGCGTGCCGCTTTCTTCGTG 648
|||.|||.|||||||.||||||||.|||||.|| |.||.|| ||||.||||||||.|||||.||||||||.|||
Sbjct 1185 ACGTCAGACCTTCTTCAGCTCTGGCAAGAACAA-GATGTCTCTGGACGCCATCGAACGTGCTGCTTTCTTTGTG 1257
Query 649 GCCCTGGATGAGGAATCCTACTCCTATGACCCCGAAGATGAGGCCAGCCTCAGCCTCTATGGCAAGGCCCTGCT 722
.||||||||||.||.||..|.|.|||..||||.||.||||||.||||.||.||||||||.|||||.|||.||||
Sbjct 1258 ACCCTGGATGAAGATTCTCATTGCTACAACCCTGACGATGAGACCAGTCTTAGCCTCTACGGCAAAGCCTTGCT 1331
Query 723 ACATGGCAACTGCTACAACAGGTGGTTTGACAAATCCTTCACTCTCATTTCCTTCAAGAATGGCCAGTTGGGTC 796
.||||||||||||||.||||||||||||||||||||.|||||.||.||.||||.|||||||||||.|||.||.|
Sbjct 1332 CCATGGCAACTGCTATAACAGGTGGTTTGACAAATCTTTCACCCTTATCTCCTGCAAGAATGGCCTGTTAGGCC 1405
Query 797 TCAATGCAGAGCATGCGTGGGCAGATGCTCCCATCATTGGGCACCTCTGGGAGTTTGTCCTGGGCACAGACAGC 870
||||..|.||.||..||||||||||.||.||||||||||||||||||||||||||||||||||||||.||.|.|
Sbjct 1406 TCAACACCGAACACTCGTGGGCAGACGCGCCCATCATTGGGCACCTCTGGGAGTTTGTCCTGGGCACTGATACC 1479
Query 871 TTCCACCTGGGCTACACGGAGACCGGGCACTGCCTGGGCAAACCGAACCCTGCGCTCGCACCTCCTACA-CGGC 943
||.||||||||||||||||||||.||.|||||..||||..|.||.|||.|..||.|..||||.||| || ||||
Sbjct 1480 TTTCACCTGGGCTACACGGAGACAGGACACTGTGTGGGTGAGCCAAACACCACGTTGCCACCCCCT-CAGCGGC 1552
Query 944 TGCAGTGGGACATTCCAAAACA------GGCGGTCATCAAGAGTTCCTACCAGGTGGCCAAGGCGTTGGCAGAC 1011
|||.||||||||||||..|.|| ||..|.||||.|||..||.|||||.||.||||||||..||||.||.
Sbjct 1553 TGCCGTGGGACATTCCCGAGCAGTGCCGGGAAGCCATCGAGAACTCGTACCAAGTAGCCAAGGCACTGGCCGAT 1626
Query 1012 GACGTGGAGTTGTACTGCTTCCAGTTCCTGCCCTTTGGCAAAGGCCTCATCAAGAAGTGCCGGACCAGCCCTGA 1085
|||||||||.|.|||||||||||||||.|.||||||||||||||.||.|||||||||||..||||||||||.||
Sbjct 1627 GACGTGGAGCTCTACTGCTTCCAGTTCTTACCCTTTGGCAAAGGTCTTATCAAGAAGTGTAGGACCAGCCCCGA 1700
Query 1086 TGCCTTTGTGCAGATCGCGCTGCAGCTGGCTCACTTCCGGGACAGGGGTAAGTTCTGCCTGACCTATGAGGCCT 1159
.||.|||||||||||.||.||.|||||||||||.||||||||||..||.||||||||||||||.||.|||||||
Sbjct 1701 CGCTTTTGTGCAGATTGCCCTACAGCTGGCTCATTTCCGGGACAAAGGCAAGTTCTGCCTGACTTACGAGGCCT 1774
Query 1160 CAATGACCAGAATGTTCCGGGAGGGACGGACTGAGACTGTGCGTTCCTGTACCAGCGAGTCCACAGCCTTTGTG 1233
|.|||||.|||||||||||.|||||.||||||||||||||||||||||||||||.|||||||.|||||||||||
Sbjct 1775 CGATGACAAGAATGTTCCGAGAGGGGCGGACTGAGACTGTGCGTTCCTGTACCAACGAGTCCGCAGCCTTTGTG 1848
Query 1234 CAGGCCATGATGGAGGGGTCCCACACAAAAGCAGACCTGCGAGATCTCTTCCAG-AAGGCTGCTAAGAAGCACC 1306
||||||||||||.||||||||||.|..|||..||||||.|.|||||||||||.| |||.||.|.|| |||||||
Sbjct 1849 CAGGCCATGATGAAGGGGTCCCATAAGAAACAAGACCTCCAAGATCTCTTCCGGAAAGCCTCCGAA-AAGCACC 1921
Query 1307 AGAATATGTACCGCCTGGCCATGACCGGGGCAGGGATCGACAGGCACCTCTTCTGCCTTTACTTGGTCTCCAAG 1380
|.||.|||||||||||.||||||||.|||||.|||||||||.||||||||||||||||||||.|.|||||||||
Sbjct 1922 AAAACATGTACCGCCTAGCCATGACAGGGGCTGGGATCGACCGGCACCTCTTCTGCCTTTACATCGTCTCCAAG 1995
Query 1381 TACCTAGGAGTCAGCTCTCCTTTCCTTGCTGAGGTGCTCTCGGAACCCTGGCGTCTCTCCACCAGCCAGATCCC 1454
|||.|||||||.||||||||||||||.||||||||.||.||.|||||||||.|.||||||||||||||||||||
Sbjct 1996 TACTTAGGAGTTAGCTCTCCTTTCCTGGCTGAGGTACTTTCTGAACCCTGGAGCCTCTCCACCAGCCAGATCCC 2069
Query 1455 CCAATCCCAGATCCGCATGTTCGACCCAGAGCAGCACCCCAATCACCTGGGCGCTGGAGGTGGCTTTGGCCCTG 1528
|||.|.|||||||.|||||||.||||||.|.|||.|.||||||||.|||||.|||||||||||||||||.||.|
Sbjct 2070 CCAGTTCCAGATCTGCATGTTTGACCCAAAACAGTATCCCAATCATCTGGGTGCTGGAGGTGGCTTTGGTCCCG 2143
Query 1529 TAGCAGATGATGGCTATGGAGTTTCCTACATGATTGCAGGCGAGAACACGATCTTCTTCCACATCTCCAGCAAG 1602
|.||.|||||||||||.||.||.||.||||||||.|||||.||.|||||.||.||||||||||||||||||||.
Sbjct 2144 TGGCGGATGATGGCTACGGGGTCTCTTACATGATCGCAGGAGAAAACACCATGTTCTTCCACATCTCCAGCAAA 2217
Query 1603 TTCTCAAGCTCAGAGACGAACGCCCAGCGCTTTGGAAACCACATCCGCAAAGCCCTGCTGGACATTGCTGATCT 1676
|.||||||.||||||||||||||||||||||||||.||||||||||||.||||.|||.|||||||.||.||.||
Sbjct 2218 TACTCAAGTTCAGAGACGAACGCCCAGCGCTTTGGGAACCACATCCGCCAAGCACTGTTGGACATCGCCGAACT 2291
Query 1677 TTTCCAAGTTCCCAAGGCCTACAGC 1701
||||.||.||.|||||.|..|||||
Sbjct 2292 TTTCAAAATTTCCAAGACAGACAGC 2316
