Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_10747
- Subject:
- NR_004843.2
- Aligned Length:
- 4635
- Identities:
- 1385
- Gaps:
- 3022
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTTCCTTGGTTCCGGACACAGTCCACGCAGTAACTTGTTTTTGCAGAGACTGATAGGCGGATCGGGCGTGGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGAGCGCGCCCCACTCAGGGAAAGCTGCCGTCCCTCTTTGCCTTTGAGCGCCGCAGCCCTGAGAATCGCATCTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCTTGGAAACGGTCCCAGGACTGGAGCCACCAAGAAAGCCGAAGGCAGTCGCGAAGAGCCGAGGACGCCCAGAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ACTCTGCGGCTTCCGGGAAGCGGAACCGAGCCTACCCGGAAGGAGCCAACCTCACCTGAGGCTCGCTGAGCACC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGCAGGCGTTAAACCTAACGGAGCCCACGTCATGGCGGCAGACGGGACAGGGGTAGTCGGAGGAGGGGCTGTCG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCGGCGGCCTGCCCAAGGACGGTTTGCAGGATGCTAAGTGCCCAGAGCCAATCCCCAATCGGCGGCGCGCTTCC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TCGCTGTCCCGTGACGCGCAGCGCCGAGCCTATCAGTGGTGCCGGGAGTACCTGGGCGGGGCCTGGCGCCGAGC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCGGCCGGAGGAGCTGAGCGTTTGTCCCGTGAGCGGAGGCCTCAGCAACCTGCTCTTCCGATGCTCACTACCGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 ACCACGTACCCAGTGTGGGCGGGGAGCCCCGGGAGGTGCTGCTACGACTCTACGGGGCCATCCTGCAGGGTGTA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GACTCCTTGGTATTAGAAAGCGTGATGTTCGCCATTCTCGCAGAGCGGTCTCTAGGGCCCCAGCTTTACGGAGT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GTTTCCAGAGGGCCGCTTGGAACAGTACCTCCCAGTAAGAGCCCAGTTTTTGTTGTTTTTACCCCAAGTCTTTA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CCCTTCCCAAAGTCTGCCTTCACATCCCAGGTAGGGAAATTTCCCTAAGACCTTGATCTCCTCCCATCCCGTAT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCCTTCCCCCTCCCGCCCCAGCCCCCTCACCACCCTGATAGGTTACTGGGTACAGAGCCGGCCGTTGAAAACTC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AAGAGCTCCGGGACCCAGTGTTGTCGGGAGCCATTGCAACGAGGATGGCCCGTTTCCATGGTATGGAGATGCCC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TTCACTAAGGAGCCCCGATGGTTGTTTGGGACCATGGAGCGGTACCTGAAGCAGATCCAGGACTTGCCTTCCAC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CAGCCTTCCCCAGATGAACCTGGTAGAGATGTACAGCCTCAAGGACGAGATGAACAGCCTCAGGAAGTTACTAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ACGATACCCCGTCACCAGTGGTCTTCTGCCACAATGACATCCAGGAAGGAAACATCTTGTTGCTTTCAGAGCCA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GACAGTGATGATAACCTCATGTTGGTTGATTTTGAGTACAGTAGTTATAACTACAGGGGCTTTGACATTGGGAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TCATTTTTGTGAGTGGGTTTATGATTATACTTATGAAGAATGGCCTTTCTACAAAGCAAGACCCACGGACTACC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CCACTAGAGAACAGCAGCTCCATTTTATTCGCCATTATCTGGCAGAGGTTCAGAAGGGTGAGATCCTCTCCGAA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GAGGAACAGAAGAAACGGGAAGAAGAATTGCTGCTAGAGATCAGTCGGTACTCCCTGGCATCTCACTTTTTCTG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GGGTCTGTGGTCCACCCTGCAGGCTTCGATGTCCACTATAGAGTTCGGCTACTTGGAGTATGCCCAATCTCGGT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TCCAGTTCTACTTCCAGCAGAAGGGCCAGCTGACGAGTTCCCCATCATCCTGAGGATCCAACCCCACCTCAAGT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGGGAGGGGCAGAGAGCAGACGACCCCCAGAGACGGGGCTGTG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CCTCAAAGTGCTGAATAAACCCCAGGATGGCGGAAGCACACCAGGCAGTAGCTTTCCAGTTCACTGTGACCCCA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GACGGGGTCGACTTCCGGCTTAGTCGGGAGGCTCTGAGACACATCTACCTGTCTGGAATCAACTCCTGGAAGAA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 ACGCCTTATTCGAATCAAGAATGGCATCCTTAGGGGTGTGTACCCTGGCAGCCCCACCAGCTGGCTGGTTGTTG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TCATGGCAACAGTTGGTTCCAACTACTGCAAGGTGGACATCTCCATGGGACTGGTCGATTGCATCCAGAGATGC 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CTCCCGGAAAGGTATGGCCACTTTGGGACCCCACAGACAGAGGCACTTCTCAGCATGGTCATCTTCTCCACCGG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AGTCTGGGCGACAGGCATTTTCTTCTTCCGACAAACCCTGAAGCTGCTGCTCTCCTACCACGGGTGGATGTTCG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AGATGCACAGCAAGACCAGCCATGCCACCAAGATCTGGGCTATCTGTGTCCGTCTCCTGTCCAGCCGGCGGCCC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 ATGCTCTACAGCTTCCAAACGTCACTGCCTAAGCTTCCTGTCCCCAGCGTGCCAGCCACAATTCACCGGTACTT 2368
Query 1 -------------------------------------------ATGGAGTTGCTGGCCAAAGAATTCCAGGACA 31
||||||....|||||||.|||||||||||||
Sbjct 2369 GGATTCTGTGCGGCCCTTATTGGATGATGAAGCATATTACCGCATGGAGACATTGGCCAAGGAATTCCAGGACA 2442
Query 32 AGACTGCCCCCAGGCTGCAGAAATACCTGGTGCTCAAGTCATGGTGGGCAAGTAACTATGTGAGTGACTGGTGG 105
|||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||
Sbjct 2443 AGACTGCCCCCAGGCTGCAGAAATACCTGGTGCTCAAGTCATGGTGGGCAACTAACTATGTGAGTGACTGGTGG 2516
Query 106 GAAGAGTACATCTACCTTCGAGGCAGGAGCCCTCTCATGGTGAACAGCAACTATTATGTCATGGACCTTGTGCT 179
|||||.||..|||||||.|||.||||||||||.|||||||||||||||||||||||||.||||||..|||||||
Sbjct 2517 GAAGAATATGTCTACCTCCGAAGCAGGAGCCCCCTCATGGTGAACAGCAACTATTATGCCATGGATTTTGTGCT 2590
Query 180 CATCAAGAATACAGACGTGCAGGCAGCCCGCCTGGGAAACATCATCCACGCCATGATCATGTATCGCCGTAAAC 253
.||.|||||.|||.|.|||||.||||||||.||.||.||...|.|.|||||||||||||||||||||||.||||
Sbjct 2591 TATTAAGAACACAAATGTGCAAGCAGCCCGTCTAGGCAATGCCGTTCACGCCATGATCATGTATCGCCGCAAAC 2664
Query 254 TGGACCGTGAAGAAATCAAGCCTGTGATGGCACTGGGCATAGTGCCTATGTGCTCCTACCAGATGGAGAGGATG 327
|||||||||||||.||||||||
Sbjct 2665 TGGACCGTGAAGAGATCAAGCC---------------------------------------------------- 2686
Query 328 TTCAACACCACTCGGATCCCGGGCAAGGACACAGATGTGCTACAGCACCTCTCAGACAGCCGGCACGTGGCTGT 401
||..|||||||||||||||||||.|||.|||||||||||||
Sbjct 2687 ---------------------------------GACTTGCTACAGCACCTCTCAGAGAGCAGGCACGTGGCTGT 2727
Query 402 CTACCACAAGGGACGCTTCTTCAAGCTGTGGCTCTATGAGGGCGCCCGTCTGCTCAAGCCTCAGGATCTGGAGA 475
|||||||||.||.||||||||||||.|.|||||||||||||||.|.||.|||||||||||.|..||.|||||||
Sbjct 2728 CTACCACAAAGGTCGCTTCTTCAAGGTCTGGCTCTATGAGGGCTCGCGCCTGCTCAAGCCCCGAGACCTGGAGA 2801
Query 476 TGCAGTTCCAGAGGATCCTGGACGACCCCTCCCCACCTCAGCCTGGGGAGGAGAAGCTGGCAGCCCTCACTGCA 549
|||||||||||||.|||||.||||||||.|||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 2802 TGCAGTTCCAGAGAATCCTCGACGACCCTTCCCCACCTCAGCCTGGGGAGGAGAAGCTGGCAGCCCTCACCGCA 2875
Query 550 GGAGGAAGGGTGGAGTGGGCGCAGGCACGCCAGGCCTTCTTTAGCTCTGGAAAGAATAAGGCTGCCT-TGGAGG 622
|||||||||||.||||||||..|||||||.|||.|||||||.||||||||.|||||.|| |.||.|| ||||.|
Sbjct 2876 GGAGGAAGGGTAGAGTGGGCAGAGGCACGTCAGACCTTCTTCAGCTCTGGCAAGAACAA-GATGTCTCTGGACG 2948
Query 623 CCATCGAGCGTGCCGCTTTCTTCGTGGCCCTGGATGAGGAATCCTACTCCTATGACCCCGAAGATGAGGCCAGC 696
|||||||.|||||.||||||||.|||.||||||||||.||.||..|.|.|||..||||.||.||||||.||||.
Sbjct 2949 CCATCGAACGTGCTGCTTTCTTTGTGACCCTGGATGAAGATTCTCATTGCTACAACCCTGACGATGAGACCAGT 3022
Query 697 CTCAGCCTCTATGGCAAGGCCCTGCTACATGGCAACTGCTACAACAGGTGGTTTGACAAATCCTTCACTCTCAT 770
||.||||||||.|||||.|||.||||.||||||||||||||.||||||||||||||||||||.|||||.||.||
Sbjct 3023 CTTAGCCTCTACGGCAAAGCCTTGCTCCATGGCAACTGCTATAACAGGTGGTTTGACAAATCTTTCACCCTTAT 3096
Query 771 TTCCTTCAAGAATGGCCAGTTGGGTCTCAATGCAGAGCATGCGTGGGCAGATGCTCCCATCATTGGGCACCTCT 844
.||||.|||||||||||.|||.||.|||||..|.||.||..||||||||||.||.|||||||||||||||||||
Sbjct 3097 CTCCTGCAAGAATGGCCTGTTAGGCCTCAACACCGAACACTCGTGGGCAGACGCGCCCATCATTGGGCACCTCT 3170
Query 845 GGGAGTTTGTCCTGGGCACAGACAGCTTCCACCTGGGCTACACGGAGACCGGGCACTGCCTGGGCAAACCGAAC 918
|||||||||||||||||||.||.|.|||.||||||||||||||||||||.||.|||||..||||..|.||.|||
Sbjct 3171 GGGAGTTTGTCCTGGGCACTGATACCTTTCACCTGGGCTACACGGAGACAGGACACTGTGTGGGTGAGCCAAAC 3244
Query 919 CCTGCGCTCGCACCTCCTACA-CGGCTGCAGTGGGACATTCCAAAACA------GGCGGTCATCAAGAGTTCCT 985
.|..||.|..||||.||| || |||||||.||||||||||||..|.|| ||..|.||||.|||..||.|
Sbjct 3245 ACCACGTTGCCACCCCCT-CAGCGGCTGCCGTGGGACATTCCCGAGCAGTGCCGGGAAGCCATCGAGAACTCGT 3317
Query 986 ACCAGGTGGCCAAGGCGTTGGCAGACGACGTGGAGTTGTACTGCTTCCAGTTCCTGCCCTTTGGCAAAGGCCTC 1059
||||.||.||||||||..||||.||.|||||||||.|.|||||||||||||||.|.||||||||||||||.||.
Sbjct 3318 ACCAAGTAGCCAAGGCACTGGCCGATGACGTGGAGCTCTACTGCTTCCAGTTCTTACCCTTTGGCAAAGGTCTT 3391
Query 1060 ATCAAGAAGTGCCGGACCAGCCCTGATGCCTTTGTGCAGATCGCGCTGCAGCTGGCTCACTTCCGGGACAGGGG 1133
|||||||||||..||||||||||.||.||.|||||||||||.||.||.|||||||||||.||||||||||..||
Sbjct 3392 ATCAAGAAGTGTAGGACCAGCCCCGACGCTTTTGTGCAGATTGCCCTACAGCTGGCTCATTTCCGGGACAAAGG 3465
Query 1134 TAAGTTCTGCCTGACCTATGAGGCCTCAATGACCAGAATGTTCCGGGAGGGACGGACTGAGACTGTGCGTTCCT 1207
.||||||||||||||.||.||||||||.|||||.|||||||||||.|||||.||||||||||||||||||||||
Sbjct 3466 CAAGTTCTGCCTGACTTACGAGGCCTCGATGACAAGAATGTTCCGAGAGGGGCGGACTGAGACTGTGCGTTCCT 3539
Query 1208 GTACCAGCGAGTCCACAGCCTTTGTGCAGGCCATGATGGAGGGGTCCCACACAAAAGCAGACCTGCGAGATCTC 1281
||||||.|||||||.|||||||||||||||||||||||.||||||||||.|..|||..||||||.|.|||||||
Sbjct 3540 GTACCAACGAGTCCGCAGCCTTTGTGCAGGCCATGATGAAGGGGTCCCATAAGAAACAAGACCTCCAAGATCTC 3613
Query 1282 TTCCAG-AAGGCTGCTAAGAAGCACCAGAATATGTACCGCCTGGCCATGACCGGGGCAGGGATCGACAGGCACC 1354
||||.| |||.||.|.|| ||||||||.||.|||||||||||.||||||||.|||||.|||||||||.||||||
Sbjct 3614 TTCCGGAAAGCCTCCGAA-AAGCACCAAAACATGTACCGCCTAGCCATGACAGGGGCTGGGATCGACCGGCACC 3686
Query 1355 TCTTCTGCCTTTACTTGGTCTCCAAGTACCTAGGAGTCAGCTCTCCTTTCCTTGCTGAGGTGCTCTCGGAACCC 1428
||||||||||||||.|.||||||||||||.|||||||.||||||||||||||.||||||||.||.||.||||||
Sbjct 3687 TCTTCTGCCTTTACATCGTCTCCAAGTACTTAGGAGTTAGCTCTCCTTTCCTGGCTGAGGTACTTTCTGAACCC 3760
Query 1429 TGGCGTCTCTCCACCAGCCAGATCCCCCAATCCCAGATCCGCATGTTCGACCCAGAGCAGCACCCCAATCACCT 1502
|||.|.|||||||||||||||||||||||.|.|||||||.|||||||.||||||.|.|||.|.||||||||.||
Sbjct 3761 TGGAGCCTCTCCACCAGCCAGATCCCCCAGTTCCAGATCTGCATGTTTGACCCAAAACAGTATCCCAATCATCT 3834
Query 1503 GGGCGCTGGAGGTGGCTTTGGCCCTGTAGCAGATGATGGCTATGGAGTTTCCTACATGATTGCAGGCGAGAACA 1576
|||.|||||||||||||||||.||.||.||.|||||||||||.||.||.||.||||||||.|||||.||.||||
Sbjct 3835 GGGTGCTGGAGGTGGCTTTGGTCCCGTGGCGGATGATGGCTACGGGGTCTCTTACATGATCGCAGGAGAAAACA 3908
Query 1577 CGATCTTCTTCCACATCTCCAGCAAGTTCTCAAGCTCAGAGACGAACGCCCAGCGCTTTGGAAACCACATCCGC 1650
|.||.||||||||||||||||||||.|.||||||.||||||||||||||||||||||||||.||||||||||||
Sbjct 3909 CCATGTTCTTCCACATCTCCAGCAAATACTCAAGTTCAGAGACGAACGCCCAGCGCTTTGGGAACCACATCCGC 3982
Query 1651 AAAGCCCTGCTGGACATTGCTGATCTTTTCCAAGTTCCCAAGGCCTACAGC----------------------- 1701
.||||.|||.|||||||.||.||.||||||.||.||.|||||.|..|||||
Sbjct 3983 CAAGCACTGTTGGACATCGCCGAACTTTTCAAAATTTCCAAGACAGACAGCTGAGGAAAAGAGATACCCCAGCT 4056
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 4057 GCCCTCTGGTCCCCACCTGGTGGAAGAAGAGGCCTGTGGCCAGCTCACAGGCATAAGGGGTGGCGTGCACACAC 4130
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 4131 GCCCAGTTCGGAGAACAGCTCTTGAGGCAGTGCTCCCCGGAGGAGGCAGTGCTCCCTGGGCAGATACTGCTCCT 4204
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 4205 CTAGGGCCCCCGCTGGAGGTGGGATTGGAGCAGCAGGGGAATTTTGATTTTTTTTTTTTTTTTTTGGCTTGGTA 4278
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 4279 GATGTTAATAAAAATAAGGCTGTATAATTCTTACTTGGCTGTTAGGTGCCTATGTTTTTGTTAGAGAACGATAA 4352
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 4353 GGCCCTTTCCTGCCCCAGCTCAGCCTAGGATGGAGGCGATGGAAGGGGTCGGAGAATGTTCATAATGGGCTTCT 4426
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 4427 TACCTGCTTTGAAATGGGTGCTCTTCTTGAATAATGCGGACTTGGAGAGCGCTGTCCAACCTCTCATGTGCACT 4500
Query 1702 ----------------------------------------------- 1701
Sbjct 4501 TGGAATAAATTCTTACTTTAGAACCTTAAAAAAAAAAAAAAAAAAAA 4547
