Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_10792
- Subject:
- XR_001736987.1
- Aligned Length:
- 4617
- Identities:
- 205
- Gaps:
- 4385
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGCGGGGCCGGGAGCTGCGAGGAGCCCCCCAGACGTCGCCGAGCGCGAGGGCGGGCGTGCTCGGAGTGGTCGCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGTCAGCCGCCGCCCCTCAGTCTCCGCACTTGCAGGTCCCCTCCCTCTCCGCCGGGACGCGGGAGAGCCCGGCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGCGGCGGGGGCGGCCAATGCGAAACTGGCTGGTGCTGCTGTGCCCGTGTGTGCTCGGGGCCGCGCTGCACCTC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGGCTGCGGCTGCGCTCCCCGCCGCCCGCCTGCGCCTCCGGGGCCGGCCCTGCAGGTGGAGTCTCACTCTTGTT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GCCCAGGCTGGAGTGCAATGGCGCGGTCTCGGCTCACCCCAACCTCCACCTCCCGGGTTCAAGAGATTCTCCTG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CCTCAGCCTCCCAAGTAGCTGGGATAACAGATCAGTTGGCCTTATTTCCTCAGTGGAAATCTACTCACTATGAT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GTGGTAGTTGGCGTGTTGTCAGCTCGCAATAACCATGAACTTCGAAACGTGATAAGAAGCACCTGGATGAGACA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TTTGCTACAGCATCCCACATTAAGTCAACGTGTGCTTGTGAAGTTCATAATAGGTGCTCATGGCTGTGAAGTGC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTGTGGAAGACAGGGAGGATCCTTATTCCTGTAAACTACTCAACATCACAAATCCAGTTTTGAATCAGGAAATT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GAAGCGTTCAGTCTGTCCGAAGACACTTCATCGGGGCTGCCTGAGGATCGAGTTGTCAGCGTGAGTTTCCGAGT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TCTCTACCCCATCGTTATTACCAGTCTTGGAGTGTTCTACGATGCCAATGATGTGGGTTTCCAGAGGAACATCA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CTGTCAAACTTTATCAGGCAGAACAAGAGGAGGCCCTCTTCATTGCTCGCTTCAGTCCTCCAAGCTGTGGTGTG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CAGGTGAACAAGCTGTGGTACAAGCCCGTGGAACAATTCATCTTACCAGAGAGCTTTGAAGGTACAATCGTGTG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GGAGAGCCAAGACCTCCACGGCCTTGTGTCAAGAAATCTCCACAAAGTGACAGTGAATGATGGAGGGGGAGTTC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TCAGAGTCATTACAGCTGGGGAGGGTGCATTGCCTCATGAATTCTTGGAAGGTGTGGAGGGAGTTGCAGGTGGT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TTTATATATACTATTCAGGGACTGTGGAAACAACGAGCTTCAATTTGTTGCTGAAGACAGATGATGACTGTTAC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ATAGACCTCGAAGCTGTATTTAATAGGATTGTCCAAAAGAATCTGGATGGGCCTAATTTTTGGTGGGGAAATTT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CAGACTGAATTGGGCAGTTGACCGAACCGGAAAGTGGCAGGAGTTGGAGTACCCGAGCCCCGCTTACCCTGCCT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TTGCATGTGGGTCAGGATATGTGATCTCCAAGGACATCGTCAAGTGGCTGGCAAGCAACTCGGGGAGGTTAAAG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 ACCTATCAGGGTGAAGATGTAAGCATGGGCATCTGGATGGCTGCCATAGGACCTAAAAGATACCAGGACAGTCT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GTGGCTGTGTGAGAAGACCTGTGAGACAGGAATGCTGTCTTCTCCTCAGTATTCTCCGTGGGAACTGACGGAAC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TGTGGAAACTGAAGGAACGGTGCGGTGATCCTTGTCGATGTCAAGCAAGATAACAGGGACTTGAATTAGCAGAG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TCTAAAATCAGGGCAGGCAAACGATAATCTGAGTGCAAGTCTGAGGAGTCCCAGGGTTTAGCAGTAGACTGTAT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GGTCTTTCAAGAGAGTTCCAGACTGGCACTTTCACCCAGAACCAATGCGGTGTTTCTTAATGTTTGCACAAATT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TCCTTAAAAATCAACTTGTACTGTAGCATAAGAAAAGTTTTTATTTATCTATTGGAAGATTATCAGAAAAATAC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CAAGTTATTTTATAAAAGAAAAAATATTTCTAAATCCTGATGCATTGTGGCTAATTAGTAATTCACCATTACCT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 ATAGTTTTTGGTTAAAACTTGGCCTAGTTCAGAAATCTGTAGTAGTAACTGAGAGTTTGAATTTCAACCTGGAT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TGCAGGATAGCTCTGTAGAGCTAATTAGGATAATTATCAGACAAAAAGGAACTCACAGGAATGCTGTGTGATCA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TGTGATCACATATTTGAGCAGTGGTCACTTATACCAAAGTTTGGGGTTTCTGGAAATAATGTCAGATTTTGTGG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 ATCTCTGAAGTGGGCAACTTGAACTAACTTGAAGAGGAACCAATATGATTCTCAGTTCTGAACCTTGGTTTTAA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AGAAGTTCATTTATATGGTAGACTAATACCCAAATTTTCTTTCTGCCATCTAACATAAATCCTGAAGGTCACAG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TTTAGTACTCATAGTTTTTAAATGCTAAAGTTGTGTGAGTATGAATAAAAGCAAATACCTCTCAGGGTTTTAGT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GCCATCGGGAAGGATATTTCTAAATTTTGTTGACATTTTGAAAGAATTAGTTTTGCTTTCCTCCTATCATTGCC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TAATGTTTACCTAATATGAGTACATTTCAATCAAAGCTGGTTATCACAGAAGAAGATATACTCAGCTTAGGTAT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AATTGTAGGGAAAAGCATGTGATTAATTTAAGTACTCTTAGAAATAGTGCAACTGAGAAGACAGATAATAGCAT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 ATTGTTATACATAGTAGAGGATGTCTCCCCAAGTTTAAGGGACATTTCCCAAAATGACCAACCAAATCATTTCT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AGTAACCCTTTAAAATAGTAGTTTCAATAGAGAATTCCATTAAAACTAGTCTTATGACAGATATTAACTGTGTT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CAGATTTTATTAGGCTAGCTAGTTTCTTTCTATTTAATATTTAAATCTTATCATGAAATGCAGTGATGAGCTGT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 AAAAATAAATATGAAATAAGATCAGAAAATCATTAGTAGGTTCAAAGCCTTTATTATTGCTATTATGTATAAGC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 CTAGAAATGGTCACTTCCCAACAAAAAATACATCCCTTGTTATACTTAGGACAAGTTGTAAACCCCCTTTGTTT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TGACAGTAGAATTGTTCCAGTGAATCATTTATTTCCGGTGAACCCCAGACACGATAAGCAGTGTGGTCTTTAAA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TTTTATTAGTTGGTTGTCACCATCGCACTAATAGACAATCTCCATTTTCCACAGAATAAAACTGTAATGACTTT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 AGGTCATTTTCCAGCTCGATTTCTCTGCCCGGCTTCTAAAATTAGAACGAAGGTGGGGAAGGATGTGATTAAGA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 CAGATCCGATAAAGCATGCTACACATACTCTTCCCCCACCCCGTCCCCAGGCAGTAGCTTACCCTTAAAATCAA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 ACAAACAGACCCATGGTCTCCATTTAGAATCAAACTGTTGCTATCTAGAGACAGTTTAATGTCATAATACGAGG 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 ACTAAGCTTGACTTTGACTTTGTATTTTGCTGGGCAACTTACTTTGGGACTTTCATAGGACAACAGAAGGTCTG 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 ACACAGGAACTTTGAGAAGACGTGACAGCAATCCCTTCACCTTTTGAATTGTCATGGAGCCTATCAAAAGACAA 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 GAAAAGTCCATTCGTTCTCTCAAATGACAGTTACCTGTAAAACTAGCTCATGTGATGAGACCACAGTATCATTG 3552
Query 1 -------------------------------------------------------------------ATGGAGT 7
| |||
Sbjct 3553 CAATGATAGCTGTATCTGTCTTTTTTTTTTTTTTTTTTTTGAGACTGACTTACTTACTTACTTAAGTA---AGT 3623
Query 8 CTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAG 81
||.|||||||.|||||||||||||||||.|||..|.|||||||||||||||||||||.||.||||.|||||||.
Sbjct 3624 CTTGCTCTGTCGCCCAGGCTGGAGTGCAATGGTGTAATCTCGGCTCACTGCAACCTCCGCTTCCCGGGTTCAAA 3697
Query 82 CGATTCTTCTGCCTCAGCCTCCAGAGTAGCTGGGACTATAGACATG--CACCACCACGCCCGGCTAA-TTTTGT 152
|.|||||.||||||||||||||.|||||||||| || ||.||||||.|||.||||| ||||||
Sbjct 3698 CAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGG-----------TGCCCATCACCACACCCAGCTAACTTTTGT 3760
Query 153 ATTTTTGGTCGAGACGGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCACC-- 224
||||||.||.||||||||||||..|||||||.|.|||||||||||||||||||||||||| |||||||.||
Sbjct 3761 ATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTC--GTGATCCGCCCG 3832
Query 225 ACCTCGGCCTCCCAAAGTGTTGAGA------------------------------------------------- 249
.||| ||||.|||||||||.||.||
Sbjct 3833 CCCT-GGCCCCCCAAAGTGCTGGGATTACAAGCATGAGCCCAGCGCCTGGCTGTATCTTTCATTTTACCCAAGT 3905
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3906 CACTTTACCCAAGTAAGTAATTAGGGGAAAGCCTGAGTCTTGTACCACCTGTTCATTTGGGGAACTGTGGGAAA 3979
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3980 CGGAGCCAACGGACCTAAGTGCCCTTTGACAGTGAGTTTCATACCATTTCAGTAGTGTATTTCTTTCTTAATCT 4053
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4054 GAATAAACCAGAATGATACTCTCAGCACAGAAGAATAAAGGGAGCGAGTCATTAACGTTTTCTTTTTAAACCTT 4127
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4128 TATGATGACTTCCTTATGAATTACTGAACGAACACTGGAATGGGACTCAGGTATCCTGAGGACATCTCTCAACT 4201
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4202 CTGGCCTTAGTTCCCCCTCTGTAAAATTAGGGTGCCAACTAAATGATCTACAAGGTCCCTTCCAGCGCCGCCAT 4275
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4276 TCTGTAATTACATCATGTGTAACTGTATTAAACATACACAAGTGACTGCCAGGCATGGGAATGTAACTTCCGAG 4349
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4350 TAAATGCTTTGGTTTGTTCAGAATACACTATGAACTTCTTTCCAAAGACGGGTTGTGGTAAATAGTGGATATTT 4423
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4424 TGATTATAAGAAATAGAGTTTCCTTGAAGCTTTAGCTGGAGATACAGCAATAGTGTGGTGTTCCTACAAATATC 4497
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4498 ACAGTGTATTCAAACATATTTTTCTATCAAAAATCATTTTTGTAAAAGCTGTGTGTTTTTATCCAACTTGTGAT 4571
Query 250 ----------------------------- 249
Sbjct 4572 AATAAATGTTCTTTATTTTAGAATAAAAA 4600
