Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_10792
- Subject:
- XR_001736989.1
- Aligned Length:
- 4538
- Identities:
- 205
- Gaps:
- 4306
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGCGGGGCCGGGAGCTGCGAGGAGCCCCCCAGACGTCGCCGAGCGCGAGGGCGGGCGTGCTCGGAGTGGTCGCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGTCAGCCGCCGCCCCTCAGTCTCCGCACTTGCAGGTCCCCTCCCTCTCCGCCGGGACGCGGGAGAGCCCGGCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGCGGCGGGGGCGGCCAATGCGAAACTGGCTGGTGCTGCTGTGCCCGTGTGTGCTCGGGGCCGCGCTGCACCTC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGGCTGCGGCTGCGCTCCCCGCCGCCCGCCTGCGCCTCCGGGGCCGGCCCTGCAGGTGGAGTCTCACTCTTGTT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GCCCAGGCTGGAGTGCAATGGCGCGGTCTCGGCTCACCCCAACCTCCACCTCCCGGGTTCAAGAGATTCTCCTG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CCTCAGCCTCCCAAGTAGCTGGGATAACAGATCAGTTGGCCTTATTTCCTCAGTGGAAATCTACTCACTATGAT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GTGGTAGTTGGCGTGTTGTCAGCTCGCAATAACCATGAACTTCGAAACGTGATAAGAAGCACCTGGATGAGACA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TTTGCTACAGCATCCCACATTAAGTCAACGTGTGCTTGTGAAGTTCATAATAGGTGCTCATGGCTGTGAAGTGC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTGTGGAAGACAGGGAGGATCCTTATTCCTGTAAACTACTCAACATCACAAATCCAGTTTTGAATCAGGAAATT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GAAGCGTTCAGTCTGTCCGAAGACACTTCATCGGGGCTGCCTGAGGATCGAGTTGTCAGCGTGAGTTTCCGAGT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TCTCTACCCCATCGTTATTACCAGTCTTGGAGTGTTCTACGATGCCAATGATGTGGGTTTCCAGAGGAACATCA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CTGTCAAACTTTATCAGGCAGAACAAGAGGAGGCCCTCTTCATTGCTCGCTTCAGTCCTCCAAGCTGTGGTGTG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CAGGTGAACAAGCTGTGGTACAAGCCCGTGGAACAATTCATCTTACCAGAGAGCTTTGAAGGTACAATCGTGTG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GGAGAGCCAAGACCTCCACGGCCTTGTGTCAAGAAATCTCCACAAAGTGACAGTGAATGATGGAGGGGGAGTTC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TCAGAGTCATTACAGACTGTGGAAACAACGAGCTTCAATTTGTTGCTGAAGACAGATGATGACTGTTACATAGA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CCTCGAAGCTGTATTTAATAGGATTGTCCAAAAGAATCTGGATGGGCCTAATTTTTGGTGGGGAAATTTCAGAC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TGAATTGGGCAGTTGACCGAACCGGAAAGTGGCAGGAGTTGGAGTACCCGAGCCCCGCTTACCCTGCCTTTGCA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TGTGGGTCAGGATATGTGATCTCCAAGGACATCGTCAAGTGGCTGGCAAGCAACTCGGGGAGGTTAAAGACCTA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TCAGGGTGAAGATGTAAGCATGGGCATCTGGATGGCTGCCATAGGACCTAAAAGATACCAGGACAGTCTGTGGC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TGTGTGAGAAGACCTGTGAGACAGGAATGCTGTCTTCTCCTCAGTATTCTCCGTGGGAACTGACGGAACTGTGG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AAACTGAAGGAACGGTGCGGTGATCCTTGTCGATGTCAAGCAAGATAACAGGGACTTGAATTAGCAGAGTCTAA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AATCAGGGCAGGCAAACGATAATCTGAGTGCAAGTCTGAGGAGTCCCAGGGTTTAGCAGTAGACTGTATGGTCT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TTCAAGAGAGTTCCAGACTGGCACTTTCACCCAGAACCAATGCGGTGTTTCTTAATGTTTGCACAAATTTCCTT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AAAAATCAACTTGTACTGTAGCATAAGAAAAGTTTTTATTTATCTATTGGAAGATTATCAGAAAAATACCAAGT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TATTTTATAAAAGAAAAAATATTTCTAAATCCTGATGCATTGTGGCTAATTAGTAATTCACCATTACCTATAGT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TTTTGGTTAAAACTTGGCCTAGTTCAGAAATCTGTAGTAGTAACTGAGAGTTTGAATTTCAACCTGGATTGCAG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GATAGCTCTGTAGAGCTAATTAGGATAATTATCAGACAAAAAGGAACTCACAGGAATGCTGTGTGATCATGTGA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TCACATATTTGAGCAGTGGTCACTTATACCAAAGTTTGGGGTTTCTGGAAATAATGTCAGATTTTGTGGATCTC 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TGAAGTGGGCAACTTGAACTAACTTGAAGAGGAACCAATATGATTCTCAGTTCTGAACCTTGGTTTTAAAGAAG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TTCATTTATATGGTAGACTAATACCCAAATTTTCTTTCTGCCATCTAACATAAATCCTGAAGGTCACAGTTTAG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TACTCATAGTTTTTAAATGCTAAAGTTGTGTGAGTATGAATAAAAGCAAATACCTCTCAGGGTTTTAGTGCCAT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CGGGAAGGATATTTCTAAATTTTGTTGACATTTTGAAAGAATTAGTTTTGCTTTCCTCCTATCATTGCCTAATG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TTTACCTAATATGAGTACATTTCAATCAAAGCTGGTTATCACAGAAGAAGATATACTCAGCTTAGGTATAATTG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TAGGGAAAAGCATGTGATTAATTTAAGTACTCTTAGAAATAGTGCAACTGAGAAGACAGATAATAGCATATTGT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TATACATAGTAGAGGATGTCTCCCCAAGTTTAAGGGACATTTCCCAAAATGACCAACCAAATCATTTCTAGTAA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CCCTTTAAAATAGTAGTTTCAATAGAGAATTCCATTAAAACTAGTCTTATGACAGATATTAACTGTGTTCAGAT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TTTATTAGGCTAGCTAGTTTCTTTCTATTTAATATTTAAATCTTATCATGAAATGCAGTGATGAGCTGTAAAAA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TAAATATGAAATAAGATCAGAAAATCATTAGTAGGTTCAAAGCCTTTATTATTGCTATTATGTATAAGCCTAGA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 AATGGTCACTTCCCAACAAAAAATACATCCCTTGTTATACTTAGGACAAGTTGTAAACCCCCTTTGTTTTGACA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GTAGAATTGTTCCAGTGAATCATTTATTTCCGGTGAACCCCAGACACGATAAGCAGTGTGGTCTTTAAATTTTA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TTAGTTGGTTGTCACCATCGCACTAATAGACAATCTCCATTTTCCACAGAATAAAACTGTAATGACTTTAGGTC 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 ATTTTCCAGCTCGATTTCTCTGCCCGGCTTCTAAAATTAGAACGAAGGTGGGGAAGGATGTGATTAAGACAGAT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 CCGATAAAGCATGCTACACATACTCTTCCCCCACCCCGTCCCCAGGCAGTAGCTTACCCTTAAAATCAAACAAA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 CAGACCCATGGTCTCCATTTAGAATCAAACTGTTGCTATCTAGAGACAGTTTAATGTCATAATACGAGGACTAA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 GCTTGACTTTGACTTTGTATTTTGCTGGGCAACTTACTTTGGGACTTTCATAGGACAACAGAAGGTCTGACACA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 GGAACTTTGAGAAGACGTGACAGCAATCCCTTCACCTTTTGAATTGTCATGGAGCCTATCAAAAGACAAGAAAA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 GTCCATTCGTTCTCTCAAATGACAGTTACCTGTAAAACTAGCTCATGTGATGAGACCACAGTATCATTGCAATG 3478
Query 1 --------------------------------------------------------------ATGGAGTCTCGC 12
| |||||.||
Sbjct 3479 ATAGCTGTATCTGTCTTTTTTTTTTTTTTTTTTTTGAGACTGACTTACTTACTTACTTAAGTA---AGTCTTGC 3549
Query 13 TCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATT 86
|||||.|||||||||||||||||.|||..|.|||||||||||||||||||||.||.||||.|||||||.|.|||
Sbjct 3550 TCTGTCGCCCAGGCTGGAGTGCAATGGTGTAATCTCGGCTCACTGCAACCTCCGCTTCCCGGGTTCAAACAATT 3623
Query 87 CTTCTGCCTCAGCCTCCAGAGTAGCTGGGACTATAGACATG--CACCACCACGCCCGGCTAA-TTTTGTATTTT 157
||.||||||||||||||.|||||||||| || ||.||||||.|||.||||| |||||||||||
Sbjct 3624 CTCCTGCCTCAGCCTCCTGAGTAGCTGG-----------TGCCCATCACCACACCCAGCTAACTTTTGTATTTT 3686
Query 158 TGGTCGAGACGGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCACC--ACCTC 229
|.||.||||||||||||..|||||||.|.|||||||||||||||||||||||||| |||||||.|| .|||
Sbjct 3687 TAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTC--GTGATCCGCCCGCCCT- 3757
Query 230 GGCCTCCCAAAGTGTTGAGA------------------------------------------------------ 249
||||.|||||||||.||.||
Sbjct 3758 GGCCCCCCAAAGTGCTGGGATTACAAGCATGAGCCCAGCGCCTGGCTGTATCTTTCATTTTACCCAAGTCACTT 3831
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3832 TACCCAAGTAAGTAATTAGGGGAAAGCCTGAGTCTTGTACCACCTGTTCATTTGGGGAACTGTGGGAAACGGAG 3905
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3906 CCAACGGACCTAAGTGCCCTTTGACAGTGAGTTTCATACCATTTCAGTAGTGTATTTCTTTCTTAATCTGAATA 3979
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3980 AACCAGAATGATACTCTCAGCACAGAAGAATAAAGGGAGCGAGTCATTAACGTTTTCTTTTTAAACCTTTATGA 4053
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4054 TGACTTCCTTATGAATTACTGAACGAACACTGGAATGGGACTCAGGTATCCTGAGGACATCTCTCAACTCTGGC 4127
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4128 CTTAGTTCCCCCTCTGTAAAATTAGGGTGCCAACTAAATGATCTACAAGGTCCCTTCCAGCGCCGCCATTCTGT 4201
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4202 AATTACATCATGTGTAACTGTATTAAACATACACAAGTGACTGCCAGGCATGGGAATGTAACTTCCGAGTAAAT 4275
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4276 GCTTTGGTTTGTTCAGAATACACTATGAACTTCTTTCCAAAGACGGGTTGTGGTAAATAGTGGATATTTTGATT 4349
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4350 ATAAGAAATAGAGTTTCCTTGAAGCTTTAGCTGGAGATACAGCAATAGTGTGGTGTTCCTACAAATATCACAGT 4423
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4424 GTATTCAAACATATTTTTCTATCAAAAATCATTTTTGTAAAAGCTGTGTGTTTTTATCCAACTTGTGATAATAA 4497
Query 250 ------------------------ 249
Sbjct 4498 ATGTTCTTTATTTTAGAATAAAAA 4521
