Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_10792
Subject:
XR_001737527.1
Aligned Length:
4102
Identities:
216
Gaps:
3853

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGGTGGAAGGAAGAGGAAGAGGGTCTGGGCGATGGTGCATCCGGGACGAGCCTCCAGAGACCAAGCGGGATAGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TACCCCATGTTTCCCCATCACTCGAGGAGTCTGGGCAGAGACTGGACTACACCGTGGGAGAATCTGCAAAGGTG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TTGCTGGAACAGACATATTTCTAGTTGTATGAGGTGGCCTGGACATTACTCTCGAGCTCCTTACCCATACTTCA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GTAGTAGGCATTTTTCACTAAATTGGAGACCACCCTGTTTGTTTGAGTCTAGAACTCAGTTCCAGTACTGTAAC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TGGAGACCTGACAACCTGAGCCAGACATCTTTGATTCATCTCTCTAGTTACGTCATGAACGCTGAGGGAGATGA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GCCTTCATCAAAACGAAGAAAACACCAAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AAAAAACGAAGATCCTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GTGATGTCCTATAATATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AGTATTACACTGGAGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TGCAAGAAGTTCAAGAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGTTATCACTGTGAA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TATAAGATGCGGACAGGAAGGAAACCTGATGGCTGTGCTATTTGCTTCAAACATTCCAAATTTTCACTCTTGTC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AGTGAACCCAGTGGAATTCTTCCGCCCTGATATTTCTCTGTTGGACAGAGACAATGTTGGATTAGTTTTACTCT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TACAGCCCAAAATTCCATATGCTGCCTGCCCTGCAATCTGCGTAGCAAATACGCATCTGTTGTATAATCCAAGG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CGAGGTGATATTAAGCTGACGCAATTGGCAATGCTACTGGCAGAGATTTCCAGTGTTGCCCACCAGAAAGATGG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CAGCTTCTGCCCTATTGTTATGTGTGGTGACTTTAATTCTGTTCCTGGTTCTCCACTATATAGTTTCATAAAGG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AAGGAAAATTGAATTATGAAGGACTTCCCATAGGAAAGACAGTGATCTGACACAAACACAGCTGAAGCAAACAG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AGGTCCTAGTGACAGCTGAAAAATTGTCTTCAAATTTACAGCACCATTTCAGTTTGTCATCTGTTTATTCACAT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TACTTTCCTGACACTGGAATTCCAGAAGTGACCACCTGTCATTCCCGAAGTGCCATAACTGTGGATTATATTTT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CTACTCTGCAGAAAAGGAAGATGTTGCTGGGCACCCAGGAGCTGAAGTTGCTTTGGTTGGTGGCTTGAAACTTC  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TAGCTAGACTGTCACTTCTTACAGAACAAGACTTATGGACTGTTAATGGACTTCCAAACGAAAATAACTCTTCA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GATCATCTGCCTTTATTGGCAAAGTTCAGACTTGAGCTCTGACTCTCTTTGATCACATACTAATTTTCTTTCCA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  ATTTGTATTGTTTTTCAAAGAATGTAAAGTTCTTAAGTGTATGCATGTTGTTTATTTTTGCACTGTGGAGATTC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TGAAGCGGTTATGTTAGATGCTTTGAAACTCCATATCAGAAGAAATAACTTTATAACAATTTTTTTTAATAATG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  AAAAATATTTTCGTGACAAGTGAGCTCTAAATTCTCTTTATTGTAAAAGAGATGTAAAGGTTTTATATTCTAAA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TCCTAGTAAAATTGACAGTGATTTTTAAATATAATGCATCTTCCTTTGTCTGCTTAGTAAAAAATTTCATTTCA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TAATTTTGGCAAGCTCTGTAGTGGATCCAAAGTATCTTTGAGTTCTTGCAAACTACAAGTTGTTTCCTTTCCAG  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  AAGGCTTGATTTCATTAGGAGACCCCTCTATTGAGTTCTAAATAGTTTATCTTAGAAAGCCTTGGGTCATTCAC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  AGGTATCCAACCAGCCATTGTTTAGTTTGTTTTTGAAGGGGTTTGATAATGCTTTTTAAGTTGTACAGAATGCT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TAATCCATCTTATTACTGTCCTGAGCCATGTAATATGCCTGCATCGTGTTGGGGAAATGTTTGGGAAATATAAG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CCAGCATAACGTGTAAAGCTCACTCTTTCACCCTGGAACAGACAAGAGGTGGGCTTAATAGAGGCAGAGACTGG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  GGATATACCTTTGTTTCCCTAGCATTTTTATTTATTTATTTTTATTTTATTTTATTTTTTGAGATGGAGTTTCA  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  CTCTTGTTGCCCAGGCTGGGGGTGCAATGGCGCAATCTTTGCTCACTGCAACCCCTGCCTCCCGGGCTCAAGCG  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  ATTCTCCTGCCTCAGCCTCTCGAGTAGCTGGGATTACAGGCATGCGTCACCACTCCCAGCTAATTTTGTATTTT  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  CAGTAGAGACAGGGTTTCCCCATGTTGGTTAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCCGCCCACCTCA  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  GCTCTCAAAGTGCTGGGATTACAGGCGGGAGCCACTGCACATGGCAGCATTTTTTAAAAATTCAGTTTTAAGAT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  CTCTGGTTTAGGGGAGAGATTTTATTTTACTGAACCAGTTCTATAGAAATTTATTTTATTAGGAAATTTGTCTT  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  TGGAACAAAGTGGCAGCTATAAAATTATTTTTGTTAAGCCTCAGAAATATGAGGAAGCCTGTAAAACTCTAGTG  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  GGGAGATATTAACTTGGAGACCTAATGCTCTGTAAATAGTCATTTAAACTGTTGGTTTTAGTGGTTTTGTTTCT  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  AAAATGTTTTCTTTTACCGTGATGCACCAGTATGAGATGGTGCTGACACTTTCTATGAAGTGGTTATGAGCAGG  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  TTTAATAAATCCTCTATACAAGTGTTTGAATCAATTTTAAAACATAAAAAGTGGAAATTTCCTTTTTTGTAGAC  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  AGTAGGAACAAGGAATTATATGCATTTTTACTAAGTAGTAATTTTACACTGAATTGTAAATGTTTTTACAGTGA  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  GTTTTATTAATAGAATGCTTCACCTTAAATTGGAAAACAATAATAGTCTTGGACTAAGTCTTTGTACTAAAGCA  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  TTTGCTATAATTATTTTTAAAAAAACAAACAGATGAAAACCTCAGAGAAGGCATGTGGATTATAAGATTTGTCT  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  AGTAAAAATTGTAATTGAATATGTTTAAATATTTAATTTCTCATTTTGGGGGGTTTTTATTTTTTTATTTTTTA  3256

Query    1  -ATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCA  73
             ||||.|||||.|.||.|.||||||||||||||||||||||..||.|||||||||||||||||||.||||||..
Sbjct 3257  GATGGTGTCTCACGCTATCGCCCAGGCTGGAGTGCAGTGGCGCGAACTCGGCTCACTGCAACCTCCGCCTCCTG  3330

Query   74  GGTTCAAGCGATTCTTCTGCCTCAGCCTCCAGAGTAGCTGGGACTATAGACATGCACCACCACGCCCGGCTAA-  146
            |||||||||.|||||.||.|||||||||||..|||||||||||.||.||.||||||||||||.||||.||||| 
Sbjct 3331  GGTTCAAGCAATTCTCCTTCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCCAGCTAAT  3404

Query  147  TTTTGTATTTTTGGTCGAGACGGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCA--AGTGA  218
            ||||||||||||.||.||||.||..||||||||||||.|.|||||||||||||||||||||||||||  .||||
Sbjct 3405  TTTTGTATTTTTAGTAGAGATGGAATTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGGGTGA  3478

Query  219  TCCA-CCACCTCGGCCTCCCAAAGTGTTGAGA------------------------------------------  249
            |||| ||.||||||.|||||||||||.||.||                                          
Sbjct 3479  TCCACCCGCCTCGGGCTCCCAAAGTGCTGTGATTACAGGCATGAGCCACCATGCCTGGCCTTTGGGGGGATTTT  3552

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3553  AATTACAGTATTAATTATAGTTCTAGGATTTCCCACATTTTATAGTAGTAGTTTGCAGGATATTATGTGCCCTA  3626

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3627  ATTAGCAGATATAGACATTATCAAATTATAATGATAGTATAATTATCCCTTTTTAATATTGGGGAAAGAAAAAT  3700

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3701  GAAAATTCATTAGTTAATTACTGCTTTGTGTTGTGTGAATTTATTAACAAATAACATTATTACATATAGGTCAT  3774

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3775  TGTTAACAAACAAACATCCCTGAAAACCTCTGTGAAAATTTAATTTTTTATATCCTGATTAATATATTGTGACT  3848

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3849  TTAGGCCCATTTTTCATGTGCTTCACTTTGATAGAGTTAATCCATAAAATTGCTCTTTACTTTAGCTTATCAAA  3922

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3923  TGAAGTATTATTTTGTGGACTGGAGGCCAAAAAGTCAATGTGAGCTTCTCACAGGTTTTTAAAGCTCCACTAAA  3996

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3997  AATAATTATCCACTTGTCTTTACTTTTGTTGACCAGAATAGTTGGTAACTCTGCCAGAGCCTGTACTTACCTGC  4070

Query  250  --------------------------------  249
                                            
Sbjct 4071  CAAAAACAATTAAATCTGGTTAATGCCTGAAA  4102

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