Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_10792
Subject:
XR_001737530.1
Aligned Length:
4520
Identities:
216
Gaps:
4271

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TCAGGGACTCTGACTGCGCAAGATGGAGTGTAGGCCGGCCGGCGAGACTGCACCTCCCAGCATGCCTTGCAGCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGGACTGGAGTCGGTACTTAAGAGTGATGGGGTTCCCTAGATACTTTAGGCCGTCGCATCGATTATAGAGATTG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGGTGGAACCCGGGGCCTGGGAACTGGACGCACGCGGAGGGCGAAGATGGAAGCCTGGCGCTGTATACCCCATG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TTTCCCCATCACTCGAGGAGTCTGGGCAGAGACTGGACTACACCGTGGGAGAATCTGCAAAGGTGTTGCTGGAA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CAGACATATTTCTAGTTGTATGAGGTGGCCTGGACATTACTCTCGAGCTCCTTACCCATACTTCAGTAGTAGGC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ATTTTTCACTAAATTGGAGACCACCCTGTTTGTTTGAGTCTAGAACTCAGTTCCAGTACTGTAACTGGAGACCT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GACAACCTGAGCCAGACATCTTTGATTCATCTCTCTAGTTACGTCATGAACGCTGAGGGAGATGAGCCTTCATC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  AAAACGAAGAAAACACCAAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AGATCCTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TATAATATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CTGGAGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TTCAAGAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGTTATCACTGTGAATATAAGATG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CGGACAGGAAGGAAACCTGATGGCTGTGCTATTTGCTTCAAACATTCCAAATTTTCACTCTTGTCAGTGAACCC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AGTGGAATTCTTCCGCCCTGATATTTCTCTGTTGGACAGAGACAATGTTGGATTAGTTTTACTCTTACAGCCCA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AAATTCCATATGCTGCCTGCCCTGCAATCTGCGTAGCAAATACGCATCTGTTGTATAATCCAAGGCGAGGTGAT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  ATTAAGCTGACGCAATTGGCAATGCTACTGGCAGAGATTTCCAGTGTTGCCCACCAGAAAGATGGCAGCTTCTG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  CCCTATTGTTATGTGTGGTGACTTTAATTCTGTTCCTGGTTCTCCACTATATAGTTTCATAAAGGAAGGAAAAT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TGAATTATGAAGGACTTCCCATAGGAAAGACAGTGATCTGACACAAACACAGCTGAAGCAAACAGAGGTCCTAG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TGACAGCTGAAAAATTGTCTTCAAATTTACAGCACCATTTCAGTTTGTCATCTGTTTATTCACATTACTTTCCT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GACACTGGAATTCCAGAAGTGACCACCTGTCATTCCCGAAGTGCCATAACTGTGGATTATATTTTCTACTCTGC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  AGAAAAGGAAGATGTTGCTGGGCACCCAGGAGCTGAAGTTGCTTTGGTTGGTGGCTTGAAACTTCTAGCTAGAC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TGTCACTTCTTACAGAACAAGACTTATGGACTGTTAATGGACTTCCAAACGAAAATAACTCTTCAGATCATCTG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  CCTTTATTGGCAAAGTTCAGACTTGAGCTCTGACTCTCTTTGATCACATACTAATTTTCTTTCCAATTTGTATT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  GTTTTTCAAAGAATGTAAAGTTCTTAAGTGTATGCATGTTGTTTATTTTTGCACTGTGGAGATTCTGAAGCGGT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TATGTTAGATGCTTTGAAACTCCATATCAGAAGAAATAACTTTATAACAATTTTTTTTAATAATGAAAAATATT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TTCGTGACAAGTGAGCTCTAAATTCTCTTTATTGTAAAAGAGATGTAAAGGTTTTATATTCTAAATCCTAGTAA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  AATTGACAGTGATTTTTAAATATAATGCATCTTCCTTTGTCTGCTTAGTAAAAAATTTCATTTCATAATTTTGG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  CAAGCTCTGTAGTGGATCCAAAGTATCTTTGAGTTCTTGCAAACTACAAGTTGTTTCCTTTCCAGAAGGCTTGA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TTTCATTAGGAGACCCCTCTATTGAGTTCTAAATAGTTTATCTTAGAAAGCCTTGGGTCATTCACAGGTATCCA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  ACCAGCCATTGTTTAGTTTGTTTTTGAAGGGGTTTGATAATGCTTTTTAAGTTGTACAGAATGCTTAATCCATC  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TTATTACTGTCCTGAGCCATGTAATATGCCTGCATCGTGTTGGGGAAATGTTTGGGAAATATAAGCCAGCATAA  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  CGTGTAAAGCTCACTCTTTCACCCTGGAACAGACAAGAGGTGGGCTTAATAGAGGCAGAGACTGGGGATATACC  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  TTTGTTTCCCTAGCATTTTTATTTATTTATTTTTATTTTATTTTATTTTTTGAGATGGAGTTTCACTCTTGTTG  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  CCCAGGCTGGGGGTGCAATGGCGCAATCTTTGCTCACTGCAACCCCTGCCTCCCGGGCTCAAGCGATTCTCCTG  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  CCTCAGCCTCTCGAGTAGCTGGGATTACAGGCATGCGTCACCACTCCCAGCTAATTTTGTATTTTCAGTAGAGA  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  CAGGGTTTCCCCATGTTGGTTAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCCGCCCACCTCAGCTCTCAAA  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  GTGCTGGGATTACAGGCGGGAGCCACTGCACATGGCAGCATTTTTTAAAAATTCAGTTTTAAGATCTCTGGTTT  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  AGGGGAGAGATTTTATTTTACTGAACCAGTTCTATAGAAATTTATTTTATTAGGAAATTTGTCTTTGGAACAAA  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  GTGGCAGCTATAAAATTATTTTTGTTAAGCCTCAGAAATATGAGGAAGCCTGTAAAACTCTAGTGGGGAGATAT  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  TAACTTGGAGACCTAATGCTCTGTAAATAGTCATTTAAACTGTTGGTTTTAGTGGTTTTGTTTCTAAAATGTTT  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  TCTTTTACCGTGATGCACCAGTATGAGATGGTGCTGACACTTTCTATGAAGTGGTTATGAGCAGGTTTAATAAA  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  TCCTCTATACAAGTGTTTGAATCAATTTTAAAACATAAAAAGTGGAAATTTCCTTTTTTGTAGACAGTAGGAAC  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  AAGGAATTATATGCATTTTTACTAAGTAGTAATTTTACACTGAATTGTAAATGTTTTTACAGTGAGTTTTATTA  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  ATAGAATGCTTCACCTTAAATTGGAAAACAATAATAGTCTTGGACTAAGTCTTTGTACTAAAGCATTTGCTATA  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  ATTATTTTTAAAAAAACAAACAGATGAAAACCTCAGAGAAGGCATGTGGATTATAAGATTTGTCTAGTAAAAAT  3330

Query    1  ------------------------------------------------------------------ATGGAGTC  8
                                                                              ||||.|||
Sbjct 3331  TGTAATTGAATATGTTTAAATATTTAATTTCTCATTTTGGGGGGTTTTTATTTTTTTATTTTTTAGATGGTGTC  3404

Query    9  TCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGC  82
            ||.|.||.|.||||||||||||||||||||||..||.|||||||||||||||||||.||||||..|||||||||
Sbjct 3405  TCACGCTATCGCCCAGGCTGGAGTGCAGTGGCGCGAACTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGC  3478

Query   83  GATTCTTCTGCCTCAGCCTCCAGAGTAGCTGGGACTATAGACATGCACCACCACGCCCGGCTAA-TTTTGTATT  155
            .|||||.||.|||||||||||..|||||||||||.||.||.||||||||||||.||||.||||| |||||||||
Sbjct 3479  AATTCTCCTTCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCCAGCTAATTTTTGTATT  3552

Query  156  TTTGGTCGAGACGGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCA--AGTGATCCA-CCAC  226
            |||.||.||||.||..||||||||||||.|.|||||||||||||||||||||||||||  .|||||||| ||.|
Sbjct 3553  TTTAGTAGAGATGGAATTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGGGTGATCCACCCGC  3626

Query  227  CTCGGCCTCCCAAAGTGTTGAGA---------------------------------------------------  249
            |||||.|||||||||||.||.||                                                   
Sbjct 3627  CTCGGGCTCCCAAAGTGCTGTGATTACAGGCATGAGCCACCATGCCTGGCCTTTGGGGGGATTTTAATTACAGT  3700

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3701  ATTAATTATAGTTCTAGGATTTCCCACATTTTATAGTAGTAGTTTGCAGGATATTATGTGCCCTAATTAGCAGA  3774

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3775  TATAGACATTATCAAATTATAATGATAGTATAATTATCCCTTTTTAATATTGGGGAAAGAAAAATGAAAATTCA  3848

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3849  TTAGTTAATTACTGCTTTGTGTTGTGTGAATTTATTAACAAATAACATTATTACATATAGGTCATTGTTAACAA  3922

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3923  ACAAACATCCCTGAAAACCTCTGTGAAAATTTAATTTTTTATATCCTGATTAATATATTGTGACTTTAGGCCCA  3996

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3997  TTTTTCATGTGCTTCACTTTGATAGAGTTAATCCATAAAATTGCTCTTTACTTTAGCTTATCAAATGAAGTATT  4070

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4071  ATTTTGTGGACTGGAGGCCAAAAAGTCAATGTGAGCTTCTCACAGGTTTTTAAAGCTCCACTAAAAATAATTAT  4144

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4145  CCACTTGTCTTTACTTTTGTTGACCAGAATAGTTGGTAACTCTGCCAGAGCCTGTACTTACCTGCCAAAAACAA  4218

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4219  TTAAATCTGGTTAATGCCTGAAACCAAATCTCTCAGTCTCAAGTGTTATACTATCCAAGTTTTAAATGGAAAGG  4292

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4293  TAAACTGTGGAGTAATGAAATTTTGGTTTTACTGTACCTTTTGCTATCAAGATAATATTCATGTTTGAAATCTT  4366

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4367  GTCTTTATTTGGAATTTAGTTACTGTCTGCTTTTAACCTTTGCTTTCCTAAAGAAAGTTTGAGATCCAGAGAGT  4440

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4441  TCAAGGGATTGGGGAAAGAGAGGCGTCAAGTCATTTGCACTTTGTACCTGTAAGTTAGGTAATAAACTATTATA  4514

Query  250  ------  249
                  
Sbjct 4515  CTCGTA  4520

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