Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_10792
- Subject:
- XR_001741754.1
- Aligned Length:
- 4082
- Identities:
- 217
- Gaps:
- 3834
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTTCCGGACCACCTCGCAGCGCCGCGTCCTTAGGGGCGGGCTCGGGGGGCACCACCCTCGAGGGGCGGAACCCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGGGGGCGGTGGCGTGGATCCGGAGGTACCTGCTTCTTAAATGCTGCATTGAAAGGATGAAACAGAACGGATGT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GAACAAGAGTTCCCTGAGAAAGGACAGCTCTTAGAGAGATAGGATAATTACTGGACTCAAGAAGATACCAAATC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ATGGTGTGCATTTCTGCGTTGTGTTTGGAAGAGGAACTAGGATTGTTATGAAAAGGAAGGATGTGTTCAACTTA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GAAGAATTAAACCTCAACCATCTGTCTCTTCCAAATGGCATTCTTGATTCTAAAAATCTTAAGTAGAGTGTAAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GTTATTGTTGGATACTGTAGTAGCCAGGCTAAGCTGAGCTATTCAGTGGAACAGATAAACCCGAAAATCTCAGT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGCTTAACACAACAAGATTTATTTCTTTTTAGTATCACAATCTGATGTAGATTGGGTTGGTCTCCTGCTTGGCT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TTCCATCAAGTGACAGCTCAGGGATCCAAGTTGCTTTTATTTGGAAACTGTCATCTTGAGAGCATTTTGTTTCC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGCTGTATGGACAGGAGATCCAGAAGGTGTGGAGAAGTGCATCCTTCCTGGATCACAAATGATACATCACTTTA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GCTCACATTCCATTGTTAAGAATTAGTGACATGATCCCACTGGGATTCATGGGGTCTGGGATATGGAACACTTG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GATATTTGGCGAGCATGAACAATCTTTGCCATAGAAACATTGCCTCTATAATGTTATTCTATATCCCTTATCTT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CTCATGGTAGATTTCACATAGGATTAGTATCAGGAAAACGTTTTTCTCTCCTAAAATGTTGGTATTCTTCTTTT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TTCCCTCTGGAGTCAGGAACTTTAGATTTAATATTAATGACTATCTAATCTGAGATTTTTAGTAGCATCATGTA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TCCTATTTCTCTATTGTGTTTCTGGAATAGTTTTATTATTGTATTTTAACTGACTAACTGTATTTGATTTTTTA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AAAATTGCCATAATCCTTTCTAGTTTTAGCTGTTCATTTAATGAACACTTACCAATAGCAGATGTGTTGATAAG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GATGAAGGATGTTTTTGGCTGCAACAGAAAAACTAATAAGTGGTTTAAGCAATAAGAGTTTAATTATCTGACAC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AAGAAGTCTGGCAGTTTCAGGATAGGTTAATTCAATGGTGTGATATCATAGAGGATCATGTATACTCACTTTTT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CTGTTTTATAAACTTCAGCGTTTGATGGTGTTCCCCCTTCCTGTCACATACAGGTTAGTAGTTCCAAGTGTTGC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TTGTCATGGTAGACCCTAGTCAGGCCTGGGTCTTGTGACGCAGGAGACAAATATGCTCATAGACTTGTCGTTAT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GACATGGCTGCAGTGTGGTGCCACCAGGCCTGCATCACGCCTACTCATCATATAATATTAGATTATATAGTCTG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TGGAAAATGTTGCAAAATGATACTGGTGGCAGGGTCAGAAATTGTATTCAGACTTTGATGTTAGATCCAGGCAA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 ATGGCTTGTTGAAAAGAGATTTCTCTTTAGAGAGAAATCATGTTGGTGTACCAGGTGACATGTTTGGTTGGGGG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TGGGGTGGGGGGACTGCTTGGATAGCATGGTAGTGATAGAAGTGTGATAAGCTGGATGCTGGATATAGTTAGAA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GGATTTACTGATCAATTGGATGTGAGGAGTGATATAGAGAGAGATGTTGGGAATGACTCCAAGTTTTGGCCTGA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GTGATGGGAAAAATTGAGTTGCTATTTATCAAGATAGGGAAGACCAATGAGTTTGGTGCTGTCATAAAATAAAA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TGTATCAGATTTTTAGCAACAACTGGAAGTAAGACATTGCAAGGAGTCTGGGCTGGGCTGAGATAGAGTTCAGA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TGGGGAGCTGGAATCAGACTGCTGCCCCAGGTCCTGGGACCCTGCCATGCAGAAAAGACACCTGGCATGGGCAA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GGACTCCAGTATGCCGGAGCCTCTTCCTCCTTTCTCAGGCCAAATTTGTGTCCTTGCAAAATTTGGCTACAAAT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GTTAAATTTACAAAGACCTCTGATACCCATTATCCCACCCAACTCTCTGGAGAGCCTTTGTAATGTGGTAACTG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CTCTTATGCACATAGCCAAAGACTTGAAAACAGTCTCAGAAAAGCTGTAATTTCTACCTTCATTCATTTAAAGA 2220
Query 1 ------------------------------------------------AT------GG---AGTCTCGCTCTGT 17
|| || ||||||..|.|||
Sbjct 2221 AAACTTACTAAACACTTATTTATTTATTTTTATTTTATTTATTTATTTATTTTTGAGGCACAGTCTCAGTTTGT 2294
Query 18 TGCCCAGGCTGGAGTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTTCT 91
||||||||||||.|||.||||||..||||||||||||||||||||||||||||.|.|||||||||||||||.||
Sbjct 2295 TGCCCAGGCTGGGGTGAAGTGGCACGATCTCGGCTCACTGCAACCTCTGCCTCTCGGGTTCAAGCGATTCTCCT 2368
Query 92 GCCTCAGCCTCCAGAGTAGCTGGGACTATAGACATGCACCACCACGCCCGGCTAA-TTTTGTATTTTTGGTCGA 164
||||||||||||..||||||||||||||.||.|||||||||||||.||||.|.|| |||||||.|||||||.||
Sbjct 2369 GCCTCAGCCTCCCAAGTAGCTGGGACTACAGTCATGCACCACCACCCCCGACAAATTTTTGTACTTTTGGTGGA 2442
Query 165 GACGGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCC--ACCACCTCGGCCTCC 236
|||.||||||..|||||||.|.|||||||||||.|||||||||||||||||.|| || ||..||||.||||||
Sbjct 2443 GACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGGGA-CCTGACTGCCTCTGCCTCC 2515
Query 237 CAAAGTGTTGAGA------------------------------------------------------------- 249
|||||||.||.||
Sbjct 2516 CAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCCTGGTCCCAAACATCTATTAGGTACTTGCTGTATGTGGT 2589
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2590 GAAATAAACCCCAGCTCTCCTGATTCAAGGTTAGTGTTCTTTTCACAAATCTACTTCAATACATCAAATCCTAC 2663
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2664 TTCTCTTTCTTTCTATATTTAACTCATAAATATTCCTCTTCTGTCATTTGTGGTTTTGAAATGTCTGCAAACTC 2737
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2738 ATGGATACTATTCACTTCTAATGAATAGAATAAAGCAGAAGTGATGGAATATAACTTCAGAGGCCATTTCATGA 2811
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2812 AAGCCACTGTGGCTTCCTACTTGTTCTCTTGCTCTCTCTCTTAGAACACTTGCTCTGGGGAAAGCCAGCTGCCA 2885
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2886 TATTGTGAGCAGACCTATGAAAAGGCCCACTTGGTGAAGAACTGAGGCCTCTGGCTGATGGACACATGGGTGAC 2959
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2960 CTTGCAATCAAGTCTTCTGGCTTCAACCAAGCCTTCAGCTGAGACTGCAGCCTCATGAAAGATCCTGAGCTAGA 3033
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3034 AGCATCCTGCCATCCTAATAAGCCACTCTTGAATTTCTGACCCTTAAAAATTGTGAGATAAGCACCTGTGCTTT 3107
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3108 TTTTAAGTGTTAGATTTAAAAAACCCTGAAAAAATAAAGAAGAAAAAAGACAACTCATAATCTCACCACATTAA 3181
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3182 AAAGAATAGCTATAGAAAAATTCCAGTAGTATAAAAAGGAAAAATGGAAATAACTTCCCACCATCCCTGATCTT 3255
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3256 TAGTTCTTTTTCCCACAGTGACATTTTCTTTCCCAAGAAATGTTCATGCATATGCAATATATGTGTAAACCCTT 3329
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3330 TAAGATGTTCACAAAAGGATCATGTTACACTCATTCGAAAAACTTAATATTATATCTTGAAGGTGTCTTCATAT 3403
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3404 CAGTATATATATATCTATCTTAGTTTGTTAATAGATTTCCCATAATTTAAATGTACCATATTTCTTTTACCAGT 3477
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3478 CCCCATATATGGACATTTAGGATATTTCCAGTATTCTTTTCTGTTATAAAAATATGGTGATAAACATTTTCATG 3551
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3552 CTTTTTTGAGTATCTTCAAGTAAAGTCCTATGGGTAGCATTCTGGCATCACGTTGTATATGCATTTAAAGTTGA 3625
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3626 TGCTATTCACTTGTTCCACAATCTTTGCTCCGAGTTTACACTGATGAAGCATGAGAATGCTATATCCCCACAAA 3699
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3700 CCTGTGCATATTGTTGATAGTAAGCATTGTTTGCTATTTTCTGACTATTCATTTTTCTTCTTTTGAGAATTGCC 3773
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3774 ATGCCTAGAAGAGTGCCTGTCTTGTAATATATAAGATAATAACTTGATAGCTAGCATTTCTGAGGCTTCTTGTG 3847
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3848 CCTTTAACGTATATTTACTGTTTTGATACTTACAAAGACCCTATGAAGTACGTACTATTATTATCTGCTTATGG 3921
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3922 CTGGTGGGAAAACTGAGCTGTACAGAATTTAAACAAACTGTCCCAGGTCACACAACTAGGAAGGGTGGAGCCAG 3995
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3996 GATGCAAATGATACGGAATTTTAAAAAATGGGTAGTTGAGTGAATGAATAAATGGATGACCTGTTTACATCCTT 4069
Query 250 ------------ 249
Sbjct 4070 TCTCATTTTTAA 4081
