Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_10792
- Subject:
- XR_001746841.1
- Aligned Length:
- 5917
- Identities:
- 216
- Gaps:
- 5670
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGGCATGCACCTGTGGTCCCAGCTATTTGAGAAGCTAAGGTGAAGCCCAGGGAGCAAAAAGAGGGAGTTGCCA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GATTATTTCTACCTCCACGCCCTCCCTGCCTGTCAAGGACTGAGTCCCAGGAAGATGCCAGCTCCAGTGCTTTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCGCTCTTGCCGTCTCAGGCCACTCTGGCTGGCCGCTGGGTCCCTCAACATCCCCTGTTGGTTCCTTTAGCCCA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCCTACACCGCTGGAAATAGGCCCTTTATGAGATTCTCTTCTAAATCCTAGAAGAGTGTACCCTCCATTTCCTG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AAGAATCCTGACAAGTATGTAAACATTACTTAATAATTGTTAGGTAAAAATACTATAAATATTAAATTTATAAG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TAAATAAAAATATTTAATTTTACATAAGACAAAGCTAAAAATTTCAGTTTATAATTTTTAAACATAGACAATAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ATTTCCCAGAAAGAAATTGCTGACTACCAACCAAATTTTCATTTTTATTTTTTAAATGTTGGAAAAATTTTGTC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGAAAGATTCTTATCAACCAATCAAATTGTGTTAGCAGTTGTGTTAGTAGTCACAAGGAAAATAATCAGTCATA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TTAGTTTTCTTACTATTGTTCATATTTTGTCTTTCAAAAATAGGTGTAATGTACAAATACTTCTTAATTAGATA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGCTTAAATAAAACATTTCATATTGTATTGATTTGGGTATATTGTAGAAAATAAAAAGTTCCTCTTCAAAGCTT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CCCTTCTTGTTAAAGAATAAATCATAAGTGTTAGAATTAACAGTTTCTTTTAAAGACTAACTTTATGCTAGACA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TGCTCACAGACACGTAGTACATTCTATGTCCTCGTACTTTAACCAAGATATCTGTGCTAGACGTGCACACAGGC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ATGTCTCAGCTCGCAGCCTATGCCCTTTCCTTATTTGGGAATGTTTATTCCTTATTTGGAAATGTTATTACTTT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TCTAAGTCCTTTCGTAAGCAACTTCATTTTTTTTCCTTTGTTTTTCTATTGCCTTTACCTGTTTAAAAAAGTTT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TAAACTGTTAGCCAATCGGGTTTTAGTTTAGATTGTGAGGTCTGGCTCCAGCCAATGGAGACAGGACACAGTAG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CAGGGACAAACTGGGTAAGGGATAAAAATTGCTTCGCTCCATTGTTCCGGGGTGCTCTCGCCATTGTTCCAACT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GCCATAAACACCCTTTCTGCAGAAAGCAAAAATGGCCTTGCTGAGAGAATTAAATTTATGTTCGAGTGCTATTT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CTTTGTGGCACTGGGGAACAAGCATTCTATTTCTAAATAAACATTTTTACGTATAACAGTACTGAATATAACCA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TGGACTGTTTGCAAATTATATTGGAATCATGTAGACACAGCTTTAATAATGGATAATATAATTATTACTTTTTC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TAGCCAAAAATCAGGAGCAGACTATGTATACAAGTCTGGAATGGAGGACTTTCCATTCTAGAAGAAAGAGTGGC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CATTTTCAACTCTTCTTCCTTTTGAGACCTCACTAAAATTAGAGGAACAGAATTTAAAAATACATTACATCTCC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 ATGATAAAGAGAACAGGAAAGGAAATATCAACAGACAAGGGGATTTGACAGATATTTTTGGAGGGAAGAAACGG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TGGAGCAGAGGTAATTAAGCCGATTGGAGAGAGGCTGTCCTGCAGACCGAGTGAGACAAGGTCCTGGCACTGGA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GAGGCTGCTGCCTGGATCCCTCCCCCAACACAAGAAATCAGGAAATCACCACTCCTCTTGCCCCAGGCCAGAGA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CTAGGTTTCTGTAGACATGGAAGGTAGAGGCTGCGGACCTGGACCCCAGACACAGGTGAGAGGAGAGGCTTTGC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GCTAAAGAGAGAGAGAGAGAGAAAAGGAGGTGGGGAAGAAGAAAGGAAAGAAAGGAGGAAGAGAGAAGGCCAGG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CGCGGTGGCTCACGTCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 ACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAACACAAAAAATTAGCCGGGCGTGGTCGCGGGCG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAACGGCGTGAACCCGGGAGGCAGAGCTTGCAGTGAGC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CAAGATCGGGCCACTGCACTCCACCCTGGGTGACAGAGCGAAACAACGTCTCAGAAAAAAAGAAAGAAAGAAAG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GAGGAAGAGAGAAAAGGAGCGTGGAAAGAAAAGAAAATTTCAGGAGCTTCTACATTGGTTATGCCAGCAGAAAC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AGTTAAGCCATGGAAACTGAGTCACATACACGCTGTTTTTCTTCTCTGGTGCATGACCTTTGCTTCTGACCTTT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GTGTTGAGATGTTATGAATTAACCACCCTTCCTATTCTTCATTCAAACCTCAACTAAATGACATTGGAGATAGA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GACCCTTACCTCTTTACGATGGATGTTAAGTAACTCCCATAGAGTATAGTCAATGGTGGCCAGCCAACTTGTGT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GTGTGTGTTTTATATCTTATATTTAAAAAATGAAAAAAATGTTGTAATTCTGGCCAGATACGTGGCTCACAACT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GCAATCCCAGCACTTTGGGAGGCCAAGGTAGGCGGATCACTTGAGGCCAGAAGTTCGAGACCAGCCTGGCCAAC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AGGGTAAAACTCTGTGTCTACTAAAAATACAAAAAATTAGCCAGGCGGGCATGGTGGCGCACGCCTGTTATCCC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AGCTGCTCGGATGACTGAGGCTTGAGAATCCCTTGAACCTGGGAGGTGGAGTTTGCAGTGAGCCAAGATCATGC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CACTGCCCTCCAGCCTGAGCAACAAAGCAAGACTTTGTCTCCGAAAAAAAAAGAGCATGTTGTAATTCTGTTCA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GCACCCCTGTTTTTTGCTTATATGAATGATCTTCACCTTTCCCCGCACTGAGGAGTGATGATCACCATTCTTTG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GTGTCTGCTACCCTAACACTTGGCGCTTGAATAAACTCTTTTAAGTGGAGCCTGAGCCTTTTGATTATTTTAGG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TTGACAGGAGGAAGGGAGGAAGGGTGGGTTAAAATTAAATCTGCATACTAAGCAATAATATCCTTGCTGCTCTT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 CTTCAACTGTTTGTAGGTTATTTCTGCTCTCAGGCTTCTGTTCTACCCCTAACTCTCCTGGCTACCCAAAGGCC 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GGAGGTTATCTACTGGGGAAATCTCAAAAGACTGTAGAAAAAATGTCTCAAATTCTGGTTTTGGGAGTCTTCCA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 AAAAAAAATTTTTTTTAATTTGGCTTGCCTCTTGAATATCCTATAGAGAAGTCCCAAACTGACAAACCTGGGCT 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 GTCCTCCCAGATGCTCTACTGAGCTGTCAGTCTCTCCCTCTGGAATGGGAATAGAGCACCAAGCATAACCTGTT 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 ATTTGAAGAAAGGCTGCTACACTACACACGGACCCAAATGAACAAATATCAGGAGAACAGAAGTTAGGGGAAAC 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 AGAAGTGATGAAGAGAACAGAATAAAAGTTTTATTTTAAAATTATTATTATTATTATTATTATTATTATTATTT 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 GAGACCAAGTCTCACTGTGTCGCCCAGGCTGGAGTGCAATGGCATGATCTTGGCTCACTGCAAACTCTGCCTTC 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 TGGGTTCAAGCAATTCTTGTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGTTACCCGCCACCAAGCCCAGCTA 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 ATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGACTGGTCTCAAACTCCTGACCTCAAGTAA 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 TCCACCTGCCTCAGCATCCCAAAGCACTAGGATTACAGGCATGAGCCACCGCACCTGGCCAGAATAAAACTTTT 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 AATATCTTTTATTAACACCGCACCCAGCCAGAATAAAACTTCTAAAATCTTTTATTACTATCATCAGATAAAAT 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 AAGACATTACATTCATGAAACAGAACAGGTATTAGAATATAAGAGAGAAGAAAATCCTCAAACAAAATTGTGGC 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 AGCTGAACTAAAAACATCAAATAAGGATTGGAGTGTAATATTAAAGAAATTTCCCAGGAAGCAGAACAAAAAGA 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 AAGTAAAATAGAAAAGGATAATAGAGCAAGTGCAATTAATTCAGAGAATCAATCCAGAAGGCCCTGATACCTGA 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 CTGAATAGGGTTCCAGAAAGAGGAACAGAGAAAAAGGATGTGAAGAGTTGCATTGATAATAGTACTACTAACAC 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 TATTTTTTGTTCTTTGTCTTCAAGAAAACCTCTCAGAGTTGCAGTGTATGAGTCTCTGGATTGAAAGGGCTCAA 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 TAGATGCCCAGCATAACGATGAAGAGGACCCACATCTAGACATATATTGGCCTGAAATTTTCATGTATTTGGGA 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 TCAAGAGAAAATCCTGAAAGCTTGTAAATTAATGCTGTTCAATATGGTGGTCATTAGCCACGGCTGACTGTTCA 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 GCACTGGAGATGTGGCCACTCTGAATGGAGATGTGCTGTAAGTGTAAAATAGACACTGAATTTTGGTGGGCTCA 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 GTAGAAAAAAAAAGAGTAAAATGTCTCATTAATATTTTTCATTTTGAAAACATGTTGAAATGATTTTGTATATA 4588
Query 1 ----------------------------------ATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGC 40
||||||||||.||||.|.|||||||||||||||||||.||
Sbjct 4589 TATATTTTTTTTAATTAATTTTTTTTTTTTTGAGATGGAGTCTCACTCTATGGCCCAGGCTGGAGTGCAGTAGC 4662
Query 41 CTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTTCTGCCTCAGCCTCCAGAGTAGCTGG 114
...||||.||||||||||||||||..||||||.|||||||||.|||||.||||||||||||||.||||||||||
Sbjct 4663 GCAATCTTGGCTCACTGCAACCTCCACCTCCCTGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGG 4736
Query 115 GACTATAGACATGCACCACCACGCCCGGCTAA-TTTTGTATTTTTGGTCGAGACGGGGTTTTGCCATGTTAGTC 187
||||..||.|||||.||||.|.||||.||||| ||||||||||||.||.|||||||.||||..||||.||.|||
Sbjct 4737 GACTGCAGGCATGCGCCACTATGCCCTGCTAATTTTTGTATTTTTAGTAGAGACGGAGTTTCACCATATTGGTC 4810
Query 188 AGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCA-CCACCTCGGCCTCCCAAAGTGTTGAGA----------- 249
||||||||||||||||||||||||| ||||||.| |||||||||||||||||||||.||.||
Sbjct 4811 AGGCTGGTCTTGAACTCCTGACCTC--GTGATCTACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCCTG 4882
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4883 AGCCACCACGCCTGGCCGAAATAATATATTTTTTAAACATTGGGCTAAATATAACATATTATTACAACTACTTC 4956
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4957 CAGTTGTTTCTTTTTATTTTAAGGTGGCTCCTGGAAAATTTTAGATGACATAGACGGTTTCTGTTCTGTGTCTG 5030
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5031 TTAGACGGTGCTCTGCAGAGAAGCAGACAGGTCATGCATAAGGACACTGAGGCCAGAATGATATCTGACCTTCA 5104
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5105 GCAGCAGCTCTAGGAAACTGAAGAAAAATGATCCCCCTATTCAGAGAGAAATAGTTTTCAACCTTAGTAGTCTA 5178
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5179 CATTCTGGCAAACTTTCAGTCAACTGAAAGACAGTTAGAGACATGCAAGCACACAAAAGTTTACCTTCTTTGCT 5252
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5253 GTCTCCTTGAACGTTCCTGAAGGAAGTACCCCAGGAAATAAACTTGTAAACCAATGGCATGGAAGGCATGGGAT 5326
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5327 TTAAAAGCAGGATGTCCAGTATAGGACTCGGAGCAAGTTGTGCAGCAGGTCCAGGAAGCAGACAAGCCCGTGCA 5400
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5401 GAACAGGAAGTCAGGGGGCTCAGTGGGAAGTCATGGCACCAGTGGATTTGCTGACATAGGGAGTCTTCTGGCTC 5474
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5475 ATTGGAAGACACGTATGTAGACAACAAAGTTATTTTTTGAGAGGTGATAATTTAAGAAAAAAGTTGTACTCTTC 5548
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5549 CTGGCTCATGTGAACAGTATCTATATGACACAAATAATAATGTGAACTCAAAGACTGTGTGGTATGCTTACACC 5622
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5623 AGGGGAATGGGGGAGGGAGAGCAAAGTGCACTTGAGTTAGATAACATCTGTCAAGACAGGGAGAAAAAAGATAA 5696
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5697 TGTCTAAAATAAATAACAGCACATGCATACTCCTTAGGAATTGGAAGGTAAATGGCAGAAGAAATGGCTTAACA 5770
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5771 ATTTGTACGTGGTTTCTTGTGACTTCTTATGACTGTATAAGACCAGGGAGCAATAGGGAGGGGAGGCACAAGGG 5844
Query 250 ----------------------------------------------------------------------- 249
Sbjct 5845 ATGCTATTTTGTTTCTATTACTATTTGATTTTGTAAAACTATACACATCAATTAAAATGATAAATATTATA 5915
