Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_10792
- Subject:
- XR_001749586.2
- Aligned Length:
- 4786
- Identities:
- 217
- Gaps:
- 4538
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTTACGCCGCTGATGTGGAGTAGGGCCGAGCGCGGAACGCGAGGGGCTGCTGGGGTGTTTGTCGCAGCGGGTTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCCTCGGCGGTTTGCGGAGCTGCTAGGATGGAGCAGGTTGCGGAGGGAGCAAGGGTGACCGCAGTCCCTGTGTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGCTGCCGACAGCACTGAGGAGTTGGCCGAAGTCGAAGAAGGAGTTGGAGTAGTGGGCGAAGATAATGACGCAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCGCGAGAGGAGCGGAGGCCTTTGGCGACAGTGAGGAGGACGGAGAGGATGTGTTCGAGGTGGAGAAGATCCTG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GACATGAAGACCGAGGGGGGTAAAGTTCTTTACAAAGTTCGCTGGAAAGGCTATACATCGGATGATGATACCTG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GGAGCCCGAGATTCACCTGGAGGACTGTAAAGAAGTGCTTCTTGAATTTAGGAAGAAAATTGCAGAGAACAAAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCAAAGCAGTCAGGAAGGATATTCAGAGACTATCCTTAAATAACGACATATTTGAGGCGAACTCTGATAGCGAT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CAGCAAAGTGAGACAAAAGAAGATACTTCCCCAAAGAAGAAAAAGAAAAAATTGAGGCAGAGAGAAGAGAAAAG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCCAGATGATCTGAAAAAGAAAAAAGCAAAGGCCGGGAAGCTAAAAGACAAGTCCAAACCAGACCTGGAGAGCT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CCTTGGAAAGTTTAGTTTTTGATTTAAGGACAAAGAAAAGAATTTCTGAAGCCAAAGAAGAACTAAAGGAGTCC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAAAAGCCCAAAAAAGATGAAGTAAAAGAAACAAAAGAATTAAAGAAAGTTAAAAAGGGTGAAATAAGAGATTT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAAGACGAAAACAAGAGAAGATCCCAAAGAAAATAGAAAAACAAAAAAAGAAAAATTTGTCGAATCCCAGGTGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AATCTGAATCAAGTGTACTTAATGATTCTCCCTTTCCAGAGGATGACAGTGAAGGGCTACATTCCGACAGCAGA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GAAGAGAAACAAAACACTAAAAGTGCAAGAGAGAGAGCAGGGCAGGACATGGGGCTGGAGCATGGCTTTGAGAA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GCCCCTAGACAGTGCCATGAGTGCTGAGGAGGATACCGATGTCAGAGGCAGGAGGAAAAAGAAGACCCCGAGAA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGGCTGAGGACACTAGAGAGAACAGGAAGCTAGAGAACAAGAACGCTTTCTTAGAGAAGAAAACTGTGCCTAAA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AAGCAGAGGAATCAAGACAGAAGCAAAAGTGCTGCAGAGTTAGAGAAGCTGATGCCTGTATCTGCCCAAACGCC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AAAGGGCCGGAGGTTGAGCGGGGAAGAGAGAGGCCTCTGGTCCACGGACTCAGCCGAGGAGGACAAAGAAACCA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AAAGAAATGAATCCAAAGAAAAATATCAGAAAAGGCATGATTCTGACAAGGAAGAAAAAGGCAGAAAAGAGCCA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AAAGGATTAAAGACACTTAAGGAAATCAGAAATGCATTTGATTTATTTAAATTAACTCCAGAAGAAAAAAATGA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TGTTTCTGAGAATAATCGGAAAAGGGAAGAAATACCACTGGATTTTAAAACCATAGACGATCACAAAACCAAGG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AAAACAAACAGTCACTTAAAGAAAGGAGAAACACCAGAGACGAAACGGATACTTGGGCATACATTGCTGCAGAA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GGTGATCAGGAGGTTTTAGACAGCGTGTGCCAAGCAGATGAGAATTCAGATGGCAGGCAGCAGATTCTGAGTTT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GGGCATGGACCTGCAGTTGGAATGGATGAAGTTGGAAGATTTCCAAAAGCACCTTGATGGGAAAGATGAGAATT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TTGCTGCAACAGATGCAATTCCAAGTAATGTGTTAAGGGATGCTGTGAAAAATGGGGATTATATTACTGTAAAA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GTTGCACTTAATTCAAATGAAGAATATAACCTGGACCAAGAGTAGAGACGGGGTTTCACCATGTTAGCCAGGAT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GGTCTCGATCTCCTGACCTTGTGATCTGCCTGCCTCCGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GCGCCTGGCCACGTATGGATTTTTTTAATGGAAGCATATTGACCCTTTCTCCCTAGATTTTAGGATTCCAGTGG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AATGACACTGGTGATGCTTGCCGCCGCCGGAGGGCAGGACGACCTCCTGCGACTCCTCATCACAAAAGGCGCGA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AAGTGAACGGTCGGCAGAAGAACGGGACCACCGCCCTCATTCATGCTGCAGAGAAGAACTTTTTAACAACAGTG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GCTATTCTTTTGGAAGCAGGAGCTTTTGTAAATGTCCAGCAAAGCAATGGTGAGACTGCACTGATGAAGGCCTG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TAAAAGAGGAAATTCAGACATCGTACGACTCGTAATTGAATGTGGAGCTGACTGCAATATTTTGTCAAAGCACC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 AGAATAGTGCCCTGCACTTTGCGAAGCAGTCTAACAATGTGCTTGTGTACGACTTGCTGAAGAACCATTTAGAG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 ACACTTTCAAGAGTAGCAGAAGAGACAATAAAGGATTACTTTGAAGCTCGCCTTGCTCTGCTAGAACCAGTTTT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TCCAATCGCATGTCATCGACTCTGTGAGGGTCCAGATTTTTCAACAGATTTCAATTACAAACCCCCACAGAACA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TACCAGAAGGCTCTGGCATCCTGCTGTTTATCTTCCATGCAAACTTTTTGGGTAAAGAAGTTATTGCTCGGCTC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TGTGGACCGTGTAGTGTACAAGCTGTAGTTCTGAATGATAAATTTCAGCTTCCTGTTTTTCTGACAGGGTCTCG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CTCTGTTGTCCAGGCTGGAGTGCAGTGGCGCGGATTACAGCTCACTGGAGTCTTGACTTCCCAGGCACAAGCAA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TCCTCCCACCTCAGCCTCCTAACTACCTGGGACTAAAAATGCACGCCACCACATCCGGCTAATTTTTTGTATTT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TTTGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTTCTGGGCTCAAGCGATTGTCCGCCTTG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GCCTCCTCCACAACATCTTGACTTATGAAATAAAAAATAAAACTTATTTATGATTCTTTTACATCATTGGTGTT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TTAAGGGCTTCTGGTGTAAGTTTGAAAACACTGACTTTTTTTTTCTCTTTCCATTGTAGGACAGTCATTTTGTT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TACTCATTCAGCCCTGTTGCAGGTCCCAATAAACTCTTCATAAGGTTGACAGAAGCACCCTCTGCCAAGGTTAA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GTTGCTAATAGGTGCATACAGAGTGCAGCTGCAGTGACCAAACAGAAGGGACTGGGCGGAGTTCTCTTCAGACC 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 GATTCCTATACTCTCTTTGACAGCAGTTTGGAATTCTTCTAGCACATCTATGTAAAGTTTTGTCTGTAAACCTC 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TTGCAGTTAAGCCTGTTGTCTGTTGTAGTCTGTAAGATGCGACATAGCTGTGTCTGTGCCAGTATGCCGGAATC 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 TCAGTGCAGTGTCCAGACTGCGTATTTCAGTTTTTCCACAATGTGGATAGTACATATGAGGATTATTTAAGAAA 3478
Query 1 ------------------------------ATGGAGTCTCGCTC-TGTTGCCCAGGCTGGAGTGCAGTGGCCTG 43
|.|||||.|||||| |||||||||||||||||||||.|||...|
Sbjct 3479 ATTAAAGACTTCACTTTCTTTTTTCTGGAGACGGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGTGCG 3552
Query 44 ATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTTCTGCCTCAGCCTCCAGAGTAGCTGGGAC 117
|||||||||||||||||.||||||||||..||||||||.||||||.||||||||||||||.||||||||||||.
Sbjct 3553 ATCTCGGCTCACTGCAAGCTCTGCCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGAT 3626
Query 118 TATAGACATGCACCACCACGCCCGGCTAATTTTGTATTTTTGGTCGAGACGGGGTTTTGCCATGTTAGTCAGGC 191
||.|||||..|.|||...|.|||.|||||||||||||||||.||.||||.|||||||..|||||||.|||||||
Sbjct 3627 TACAGACACCCGCCATGGCACCCAGCTAATTTTGTATTTTTAGTAGAGATGGGGTTTATCCATGTTGGTCAGGC 3700
Query 192 TGGTCTTGAACTCCTGACCTCAAGTGATCC-ACCACCTCGGCCTCCCAAAGTG-TTGAGA-------------- 249
||||||||||||||||||||||.||||||| .||.|||||||||||||||||| ||| ||
Sbjct 3701 TGGTCTTGAACTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTTG-GATTACAGGCATGAGC 3773
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3774 CACCGCACCCAGCAAGAGTTATTTTCTTAACTTGAAATTTTCTACTAGCCCTGGTGAACTTCTGTGCTTAAAAA 3847
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3848 AAAAAAAAAAAAAAGGAAAAATTCAGCTCTAAAACATTTGCTTACAGCAAGGGAGCCATGTTATATTCAAGTTA 3921
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3922 CCCAAGCACCAAATAAAGTGTGGGTTTGCTGCCCTTGAAAGGGTTGGGAGGCCTGATCTTTTTCTAGTAGACAG 3995
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3996 TTGCCACACATTCCCCAAGCACAAAAGGTGGAGATGGCAGTCACTTTGTAAATATGCTGTAGTCACTTATCATC 4069
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4070 TTTTCAAAGGGTAACAAGAGAATCTAAGATGTAGTAAGAATGTAAACCAGTACACTATGAGACCTAAAAGAGAG 4143
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4144 TATTAAATGTGAACTTTTAGCAGAGCGTGGTGGCTCACACCTATAATCCCAGCGCTTTGGAGGCTGAGGTTGGA 4217
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4218 GGATTGCTTAAGTCCAGGAGTTCAAGACCAGCCTGGGTAACATGGGGTGGAACAAGCCTGTAGTCCCAGATACT 4291
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4292 CAGGAGGCTGAGGTGAAAGGATTGCTTGAGCCAGGGAGGTCAAGGCTGCAGTGAGCCGTGAAAGGCCACTGCAC 4365
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4366 TCCAGCCTGAGTGACAGAATGAGACCTTGTCTCAAAAAAAAAAAAAAGTTTCTTGGAACCTATACGGTTTTTTT 4439
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4440 TTGTTTTTTTTTTTTGAAAAGCCAGACCTTGTGCCCTTGTTTTGAACACCGACTGGGAAGATGGGGCTTAGGTA 4513
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4514 ACAGCCAAACCTGGCTGTCAGCTGTGTGGGAGCCACCACCCTCTCTGGGAAGAGTTCCTGCTTCTGTATGGCAA 4587
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4588 GCATAAATCAAGCTCAGTCTGGGTTATGGAGAAGTTGAAAATTGTTTTGTTCCTCATTAGTTTATAATTGTATG 4661
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4662 AAATACGATTTTAATGAAAACTTTTCAGAATTCACGTTTGTGTAGATATTTCAGAGAACCATTTTTACTTTACA 4735
Query 250 -------------------------------------------------- 249
Sbjct 4736 TCCTAAAACTGCCTTTTCCTATGGTTTTGTCAATAAAACACTATGATGTT 4785
