Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_10792
- Subject:
- XR_001750375.2
- Aligned Length:
- 6455
- Identities:
- 220
- Gaps:
- 6211
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTAAGAGAGGAGGAAAGAAAGAGGAAAAGAGTGCGAGGGAGTGAGGGAGGGAGGAAAATAAACAACAAAAAATG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCCTCTTCCTCCCCCACCGGGCAGATCGCAAGTGCGGCGGACATCAAGCAAGAGAATGGGATGGAAAGCGCCTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGAAGGGCAGGAGGCGCACCGAGAAGTGGCGGGGGGCGCGGCGGTAGGGCTGAGCCCCCCGGCTCCAGCCCCTT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTCCCCTGGAGCCGGGGGACGCCGCGACCGCTGCCGCCAGGGTGAGCGGAGAGGAAGGGGCAGTGGCGGCGGCG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GCGGCCGGAGCGGCGGCGGATCAGGTACAACTCCACTCGGAACTTCTGGGCAGGCACCACCACGCCGCCGCCGC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CGCCGCGCAGACCCCGCTGGCCTTCTCGCCCGACCACGTCGCCTGCGTGTGCGAGGCACTGCAGCAGGGGGGCA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ACCTGGACCGCCTGGCCCGGTTCCTGTGGTCCCTGCCCCAGAGCGACCTGCTACGTGGCAACGAGAGCCTGCTG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AAGGCGCGGGCGCTCGTGGCCTTCCACCAGGGCATCTACCCCGAGCTCTACAGCATCCTCGAGAGCCACAGCTT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CGAGTCGGCCAACCACCCGCTGCTGCAGCAGCTCTGGTACAAGGCGCGCTACACCGAGGCCGAGCGAGCCCGCG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GCCGGCCGCTGGGAGCCGTAGACAAGTACCGGCTGCGCAGGAAATTCCCCCTGCCCCGCACCATCTGGGACGGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GAGGAGACGGTGTATTGTTTCAAGGAGAAGTCGCGCAACGCGCTCAAGGAGCTCTACAAGCAGAATCGCTACCC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TTCGCCCGCCGAGAAGCGGCACCTGGCCAAGATCACCGGCCTCTCCCTCACCCAGGTCAGCAACTGGTTCAAGA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ACCGCCGGCAGCGCGACAGGAACCCCTCCGAGACCCAGTCCAAAAGGGCACTGGATGGTGTTTGTTAAATAGGC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CCCTTTGGCTTCCTTTGGATTCAAAGGCGACTGCACATAACTGTTCTTGGGTTGAAAGTGCCTTTTCCTACAAC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AAGGACAGCCACTTTGTTGAATGAGAGAGTTGTCAGTCTGGTGGAGTAGAAGTTTGGGAGCAGTGAGTCAGATG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GCAACCCCAGCACTGAAGATGAATCCAGCAAGGGACATGAGGATTTATCTCCTCACCCACTCTCCAGTTCATCT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GATGGCATCACCAACCTCAGCCTTTCCAGTCATATGGAGCCAGTATATATGCAACAAATTGGAAATGCTAAGAT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ATCATTAAGCTCTTCTGGAGTTCTGTTGAATGGAAGCTTGGTACCTGCAAGTACTTCACCTGTCTTCCTTAATG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GAAATTCTTTTATTCAGGGACCCAGTGGAGTTATCCTTAATGGATTAAATGTGGGAAATACACAGGCAGTGGCA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TTGAACCCACCAAAAATGTCATCAAACATTGTGAGCAATGGTATATCCATGACTGACATACTGGGGTCTACTTC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CCAGGACGTGAAGGAATTCAAAGTCCTCCAGAGTTCTGCTAACTCAGCAACCACCACGTCCTACAGCCCCAGTG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TCCCTGTCTCATTCCCAGGCCTGATACCCAGCACTGAGGTGAAAAGAGAAGGCATTCAAACAGTGGCTTCCCAA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GATGGAGGGTCTGTAGTGACTTTTACTACACCAGTGCAAATTAACCAGTATGGCATTGTCCAGATCCCCAATTC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CGGAGCAAACAGCCAGTTCCTTAATGGGAGCATTGGATTCTCTCCACTGCAGCTGCCCCCTGTGTCAGTGGCAG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CTTCACAAGGTAATATCTCAGTAAGCTCAAGCACTTCAGATGGAAGCACATTTACAAGTGAGTCTACCACAGTC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CAGCAAGGAAAGGTTTTCTTGAGCTCTCTTGCTCCCAGTGCAGTGGTATACACGGTTCCTAATACAGGCCAGAC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TATAGGATCTGTGAAACAGGAAGGCTTGGAAAGGAGCCTGGTATTTTCTCAGTTGATGCCTGTCAATCAGAATG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CACAAGTAAATGCAAACCTGTCTTCTGAAAACATCTCGGGGAGTGGCCTGCATCCACTGGCCTCCTCATTAGTT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AATGTATCTCCAACTCACAATTTTTCTCTCAGTCCCTCTACACTACTAAATCCCACTGAGCTAAACCGCGACAT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TGCCGATAGCCAACCAATGTCTGCACCGGTGGCAAGCAAATCTACTGTGACATCTGTCAGCAACACTAACTATG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CAACTCTTCAGAACTGCTCCCTTATTACTGGTCAAGACCTATTGTCAGTCCCTATGACTCAGGCTGCCCTTGGG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GAAATAGTTCCTACAGCTGAAGATCAGGTAGGTCACCCCTCCCCAGCAGTACATCAGGATTTTGTCCAAGAACA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TCGTTTGGTTCTGCAATCGGTAGCTAACATGAAAGAGAATTTCTTATCAAATTCTGAGAGCAAAGCAACAAGTA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GCTTAATGATGCTGGACTCTAAATCCAAGTATGTCTTAGATGGCATGGTTGATACTGTCTGTGAAGACCTGGAA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 ACAGACAAAAAAGAGCTTGCCAAGCTCCAGACTGTCCAGCTGGATGAAGATATGCAAGACTTATGAACTTTATT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TCCTCCTCACCTCTTTTTGGCATCAGCGGCAAATCTTTTCATGAAGCCCCAAGGACACAAAACATTTTCCCATT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TAAAGGAAAACACTCTAGTTTTGCAAGTATATGCATACAAGAGACTTTAGATTGATCTGCATGAAGATCACAGT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TAAGTATACAGGAGTAGAACTGCATTATTGCAGCCTTTTTGTTCACTTATAAATTTCTCTTTTAAATAGATGGA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GACAAAGGACAAGGTGAAATGTATCAAGTCAAAGTGAATCATTTAGTTGACTCTATAATTCTAAGGTCAAAATG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GAACTTGATAGTTTTTTAAATTAAAAAATGTATACACCTAACATAGAAAATTAAAGATAGCTGCAGACCATTAG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AAATAATACAATTGTTTTTGTTTACTTTTACTCCATGGGCATTGAAAAGGTTAAGAAACATAAATGGTACATAT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TTTTAAAGTTAAGTAGCATGCATATATATATGCACACACACCTCTTTTTCAGCATTTTTTGAGAAAGTCTTGGG 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TCTCAAACACATTTGTCTCAACACATTTCCAAATGTGATTTCTAATAGCTCAGTGTGGCTGAGAAAGTGCGGAA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 CTCCACTAAAAACTCTGAAACTTCAGTATAAATGTAAATATATCAGTTCTATAAGCAGGATTTGAGTAATTACA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 GTGAATTTTATTTTTAATGTATATGTTTCTCTTCAGGCGCTATGAACTGAAAAATATGTTTTCTTACTGTTTAA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TTTATTTTTATTGTTTGAACAGGAAGTGAACATAGTCGTTTCCAACAAAGTTTTACTTTTTGTAGGATTTTAAA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 AATAATGATTTTTACCAGGAATCTATTAAGGTCAATATTAATAACACTGAAACAGGAAATCTAACTCCCAATAT 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 TGGAATTTTGGTACTTTTTTTCACATCCTTGTTCTTTATTTAGCAACTCTGATTCATTTAAATATGTTTTTTAT 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 AGAATTCTATGTGCCTTTTTACCTCGTGGCCTTTTTATTGGTAGTAAGGTACAGAAGTGTCAACAGAAGCACTG 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 ATGGTTCTTTTCTACTATCTAACAGGGTTAATTTCACCACAAAATTGCTTTAAATCTGAAGAACTTAAGTTTCA 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 CTAAATAATATATATGACATTTATCACACAAATGGATAAACAACTAATTATTGTTGATACTTTTCATTACAAGG 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 AAAATAAGTTATAAATACCATGTCAAATTGATTATACAGGCTATGAAAACCATTTTAAAGGAAAGAAAATATGT 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 AAATTCTATTGAGCAAAATTCTGTCCTGTTGAAACTTAGTTCTAAAGGTTTTGAATCAGTTGTTACACTCTGAC 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 ACATGACTGTTGTTTGCACTATATTATCATGTCTTCTTTAAAAGTAAATATTTTTGGTTTCTGTAAGAAGCTTG 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 TTTAATAATGTTGTAAGCCGTGGCTATAGTTTTATCAAGACTCTGAACACAAGATGTAACAATGCAAATAAATT 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 TATGTAGTGAGTAAAGTTGCTCTCTAGTCTCTGAAAAGCAAAAAAAGTGAGAAAATAATTTCTTCAGAGATAAC 4144
Query 1 ---------------------------------------------------------------ATGGAGTCTCG 11
|||||||||||
Sbjct 4145 TTCAAGTTGTTGAACATAAAGGTGTTAGATGTTAGCACATCTTGCTTTTTTTTTTTTTTTGAGATGGAGTCTCG 4218
Query 12 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGAT 85
|||||||||||||||||||||||||||||..|||||.||||||||||||.||||||||||..||||||.||.||
Sbjct 4219 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCACGATCTTGGCTCACTGCAAGCTCTGCCTCCTGGGTTCACGCCAT 4292
Query 86 TCTTCTGCCTCAGCCTCCAGAGTAGCTGGGACTATAG--ACATGCACCACCACGCCCGGCTAA--TTTTGTATT 155
|||.||||||||||||||.|||||||||||||||.|| ||.|| ||||||.|||||||||| |||||||||
Sbjct 4293 TCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACCTG--CCACCATGCCCGGCTAAATTTTTGTATT 4364
Query 156 TTTGGTCGAGACGGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATC--CACCACC 227
|||.||.||||||||||||..||.||||||.||||.|||||||||.||||||||||| |||||| | ||.||
Sbjct 4365 TTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTTGATCTCCTGACCTC--GTGATCTGC-CCGCC 4435
Query 228 TCGGCCTCCCAAAGTGTTGAGA---------------------------------------------------- 249
||||||||||||||||.||.||
Sbjct 4436 TCGGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACTGTGCCTGGCCACATCTTGCTTTTTTTTTTATGAT 4509
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4510 CAGAACAAAGGGCCCACTCTAGTTCTCTACATGTCAATCAATCAAGCATGTTGAATAAGGGACATAGAGGATTT 4583
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4584 AACTTTTGTTATCATAAATGGAACTTGCAGGCATATATCAAGAACCCTATGAAGAATTCCTCTCCCATCATTTT 4657
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4658 GATAAAGAACTACATCATTTTTGATAGAATTGGTGAATGTTCCTAAACTGCTGAAGCTACATGTTTTTTGTTTT 4731
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4732 GTTTTACAAAGTCAGGTGTTTGAGAGTTCTTTTCCACTCTACTACTACTCATAGAGCTTGTTTTTTCTTTGGGT 4805
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4806 GTGTGCTGATCCTGTTACTGAGATTAATTACATGGCTCTGCAGTGTAGTTTACATAAAAATGATGTTTTCCACT 4879
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4880 TGATTGCTGCAGATATCAAGAGTTTGTTATTTTCAAATACCCATCCAACAAGAGAGATGGGGAGGTTTTTAGTT 4953
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4954 ATATATGCTATATATATATATATAACTGGAAATGTTTTATATGTTTTCCGAAAATACAATAAGCCTCTCTTTTA 5027
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5028 TTCAGTGTTCTTCCTCTTTTCTCCCTTATGAAAAAGAAAAGATAGCACAAAACTTAAGACTTACCTAGGAAACC 5101
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5102 CATTCATATTCCCACCATGATGTAATTATAACCCTACAATTACTTCAGGTAGCTACACAATATACCAGGTAAGA 5175
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5176 ATCAATGCACAGTATAAAGAACTTATTGTTCTTTTCTATTCTTTCAGTTGAATAAGGGCCAGTTGGTATGCAGC 5249
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5250 CCATGTATATGTGAATGGAGTAAGATAAACCCCATGATCTCCTTGCACAGAATTGCAAATGTCTTTTGCCATAC 5323
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5324 CAAGGGCCAGACTCAGAACCCTTGGAGTCATGTGGCAGAATTTCCCTCTTACATAAACCAATGCTTGAAAATGC 5397
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5398 TGCAAATGACCCTCTAATGATCCCTGAAGATCAAAACAGGGGTAAATGACTCCCTGCAAAACCCAACCCATGCT 5471
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5472 GCTGGCTGTGGGATTTTTGGTGTAAGCCTATCTATGCACTCTATCAGCCAGAATTTGGCATTTAGCTCTTAGTT 5545
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5546 AAATCTAGTAAAGGACAGTCTATTGTTTAAAGAGAAGGTGCATTTGTTCCTCAATCAAGCAAGAGCACCTGTGT 5619
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5620 TGTACTGCTTTATATCTCATGTATATTTATAGTAATGAAAAGACTTTTTAAATTGTACACGTTTCAGTGCCTTT 5693
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5694 CTTGTGTTATGAAAGGCAGGTAGATATTATAGCCATAGGTAAAAATCCATAGTTAAATTGCACACTGACCTTAA 5767
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5768 ATCTCTCTGTGTATGCCCTTGTATCTTGCATGTTAAAAGTTGGATTATTGGGCATGTGTGGCAGCCTGCCCTGC 5841
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5842 TACATGCTAGACAAGTGTGCTTTAGTACATAGCCACAAGTTCTTCATTCTTTAAAATGTTTTGACAGATCATCT 5915
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5916 CATAATAAAAATAATTCAGGAAAACTATGGGGAAATAGTTACATTTCACAAAAGATATTTTAAACTCTTTGTAA 5989
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5990 AACTTAGATAATAGAGCCTAGCAGTTACTTTGTATCTAATTGATACATTTTATGTTAATTTACCACCATACATT 6063
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6064 TTATTAATCAAAATTGTATAGCATGTGACTCTTTTGGCTTTCAGAGTTCTCAAAAATATTATTTTGTTGCATGT 6137
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6138 ACTGTATGTTTAGAGGCAACCAATTATATACTCAATATGGTTTTACTGTGCCTTACACAAAGAGAAACTCTATA 6211
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6212 CAGAATGTATATCATGGGGTGGGGTAACAGAGTCTTTACTGCACTGTTAGGTGATGGCACACAGAGCATGTCCC 6285
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6286 AGAACATTTCTGTGCTTAATTACCCAACCAAAGAGATCTGAAGTATGTATGTCGTACTGTAATGGGGGTTTATG 6359
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6360 CCTGGACAATTAAGTGTTTTATTTGTTTTCTGAAATGATGTGAACTTATTTTTCTAAACACTATGCTAAATAAA 6433
Query 250 ----------------- 249
Sbjct 6434 CTTTATATTTATACATA 6450
