Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_10801
- Subject:
- XM_011540965.3
- Aligned Length:
- 2594
- Identities:
- 1560
- Gaps:
- 1015
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGACAACAGAGAAGAGTTTAGTGACTGAGGCCGAAAATTCACAGCACCAACAGAAGGAAGAGGGTGAGGAAGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CATAAACTCAGGCCAACAAGAACCTCAGCAGGAGGAATCTTGTCAAACAGCAGCTGAAGGAGATAATTGGTGTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AACAGAAGCTGAAAGCTTCTAATGGAGACACTCCTACACATGAAGACTTGACCAAGAACAAGGAGCGGACATCA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAAAGCAGAGGACTTTCACGACTATTCTCCTCGTTTCTCAAAAGGCCCAAATCTCAGGTGTCCGAGGAAGAAGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CAAAGAAGTAGAGTCAGATAAAGAAAAAGGTGAAGGAGGTCAGAAAGAGATAGAATTTGGAACCAGTCTTGATG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAGAGATCATTTTAAAGGCCCCAATTGCAGCTCCTGAACCGGAACTCAAAACAGACCCATCTTTGGATCTTCAT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TCATTAAGCAGTGCAGAAACACAGCCTGCTCAGGAAGAACTCAGAGAAGATCCAGATTTTGAAATTAAGGAAGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGAAGGACTTGAAGAGTGCTCCAAAATAGAAGTAAAAGAAGAAAGCCCTCAATCAAAAGCAGAAACAGAATTAA 592
Query 1 -----------------------------------ATGCACTGCAAGGTTTCTTTGTTGGATGACACAGTTTAT 39
|||||||||||||||||||||||||||||||||||||||
Sbjct 593 AAGCTTCCCAAAAACCAATCAGAAAACACAGGAACATGCACTGCAAGGTTTCTTTGTTGGATGACACAGTTTAT 666
Query 40 GAATGTGTTGTGGAGAAACATGCTAAGGGACAAGATTTGCTTAAACGAGTATGTGAGCATCTCAATCTTTTGGA 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GAATGTGTTGTGGAGAAACATGCTAAGGGACAAGATTTGCTTAAACGAGTATGTGAGCATCTCAATCTTTTGGA 740
Query 114 AGAAGACTATTTTGGTCTAGCCATTTGGGATAACGCAACCTCTAAGACATGGCTGGATTCCGCCAAAGAAATAA 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AGAAGACTATTTTGGTCTAGCCATTTGGGATAACGCAACCTCTAAGACATGGCTGGATTCCGCCAAAGAAATAA 814
Query 188 AAAAGCAGGTTCGTGGTGTCCCTTGGAATTTTACATTTAATGTAAAGTTTTATCCACCTGACCCAGCACAGTTA 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AAAAGCAGGTTCGTGGTGTCCCTTGGAATTTTACATTTAATGTAAAGTTTTATCCACCTGACCCAGCACAGTTA 888
Query 262 ACAGAAGACATAACAAGATATTATTTATGTCTTCAGCTTCGGCAGGACATAGTTGCAGGACGTCTGCCCTGTTC 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 ACAGAAGACATAACAAGATATTATTTATGTCTTCAGCTTCGGCAGGACATAGTTGCAGGACGTCTGCCCTGTTC 962
Query 336 CTTTGCAACCTTAGCATTATTAGGTTCTTACACCATCCAGTCTGAACTGGGAGACTACGACCCAGAACTCCATG 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CTTTGCAACCTTAGCATTATTAGGTTCTTACACCATCCAGTCTGAACTGGGAGACTACGACCCAGAACTCCATG 1036
Query 410 GCGTGGATTATGTTAGTGATTTTAAACTGGCCCCGAATCAGACCAAGGAACTTGAAGAGAAGGTCATGGAACTG 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GCGTGGATTATGTTAGTGATTTTAAACTGGCCCCGAATCAGACCAAGGAACTTGAAGAGAAGGTCATGGAACTG 1110
Query 484 CATAAGTCATACAGGTCCATGACTCCAGCTCAGGCTGACTTGGAGTTTCTTGAGAATGCCAAAAAGTTGTCTAT 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CATAAGTCATACAGGTCCATGACTCCAGCTCAGGCTGACTTGGAGTTTCTTGAGAATGCCAAAAAGTTGTCTAT 1184
Query 558 GTATGGAGTTGATCTTCATAAAGCAAAGGACTTGGAAGGAGTAGATATCATCCTAGGTGTCTGCTCTAGTGGCC 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GTATGGAGTTGATCTTCATAAAGCAAAGGACTTGGAAGGAGTAGATATCATCCTAGGTGTCTGCTCTAGTGGCC 1258
Query 632 TTCTGGTTTACAAAGATAAGCTGAGAATTAACCGCTTCCCTTGGCCCAAAGTGCTGAAGATTTCTTATAAACGT 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTCTGGTTTACAAAGATAAGCTGAGAATTAACCGCTTCCCTTGGCCCAAAGTGCTGAAGATTTCTTATAAACGT 1332
Query 706 AGTAGCTTTTTCATCAAGATTCGGCCTGGAGAGCAAGAGCAGTATGAAAGTACCATCGGATTCAAACTTCCCAG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 AGTAGCTTTTTCATCAAGATTCGGCCTGGAGAGCAAGAGCAGTATGAAAGTACCATCGGATTCAAACTTCCCAG 1406
Query 780 TTACCGAGCAGCTAAGAAATTATGGAAAGTCTGTGTAGAACATCACACGTTTTTCAGATTGACATCTACAGACA 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 TTACCGAGCAGCTAAGAAATTATGGAAAGTCTGTGTAGAACATCACACGTTTTTCAGATTGACATCTACAGACA 1480
Query 854 CCATTCCCAAAAGCAAATTTCTTGCGCTAGGATCCAAATTTCGATACAGTGGCCGGACTCAAGCTCAGACCAGG 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 CCATTCCCAAAAGCAAATTTCTTGCGCTAGGATCCAAATTTCGATACAGTGGCCGGACTCAAGCTCAGACCAGG 1554
Query 928 CAAGCTAGTGCTCTAATTGACAGGCCTGCCCCACACTTCGAGCGTACAGCAAGTAAACGGGCGTCCCGGAGCCT 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CAAGCTAGTGCTCTAATTGACAGGCCTGCCCCACACTTCGAGCGTACAGCAAGTAAACGGGCGTCCCGGAGCCT 1628
Query 1002 CGATGGAGCAGCAGCTGTCGATTCGGCAGACCGAAGTCCTCGGCCCACTTCTGCACCTGCCATTACTCAGGGTC 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 CGATGGAGCAGCAGCTGTCGATTCGGCAGACCGAAGTCCTCGGCCCACTTCTGCACCTGCCATTACTCAGGGTC 1702
Query 1076 AGGTTGCAGAAGGTGGCGTCCTAGATGCCTCTGCTAAAAAAACAGTGGTCCCTAAAGCACAGAAGGAAACAGTG 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 AGGTTGCAGAAGGTGGCGTCCTAGATGCCTCTGCTAAAAAAACAGTGGTCCCTAAAGCACAGAAGGAAACAGTG 1776
Query 1150 AAGGCTGAAGTGAAAAAGGAAGACGAGCCACCTGAGCAAGCTGAGCCAGAGCCCACAGAAGCAT---------- 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 AAGGCTGAAGTGAAAAAGGAAGACGAGCCACCTGAGCAAGCTGAGCCAGAGCCCACAGAAGCATGGAAGGTGGA 1850
Query 1214 -------------------------------------------------------------------------- 1213
Sbjct 1851 AAAAACCCACATCGAGGTGACAGTACCCACCTCAAATGGTGACCAAACACAGAAGCTTGCAGAAAAAACTGAAG 1924
Query 1214 ---------------GGAAGAAAAAGAGAGAAAGACTAGATGGTGAAAACATTTATATCAGACATAGCAATTTA 1272
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 ATCTGATAAGAATGAGGAAGAAAAAGAGAGAAAGACTAGATGGTGAAAACATTTATATCAGACATAGCAATTTA 1998
Query 1273 ATGTTGGAGGATTTAGACAAGAGTCAAGAGGAGATCAAAAAACATCATGCCAGCATCAGTGAGCTGAAAAAGAA 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 ATGTTGGAGGATTTAGACAAGAGTCAAGAGGAGATCAAAAAACATCATGCCAGCATCAGTGAGCTGAAAAAGAA 2072
Query 1347 CTTCATGGAGTCTGTACCAGAACCACGGCCTAGTGAATGGGATAAACGCTTATCCACTCACTCACCCTTCCGAA 1420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 CTTCATGGAGTCTGTACCAGAACCACGGCCTAGTGAATGGGATAAACGCTTATCCACTCACTCACCCTTCCGAA 2146
Query 1421 CTCTTAACATCAATGGGCAAATCCCCACAGGAGAAGGACCTCCCCTGGTGAAGACACAAACTGTCACCATCTCA 1494
|||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||
Sbjct 2147 CTCTTAACATCAATGGGCAAATCCCCACAGGAGAAGGA---------GTGAAGA---AAACT-TC--------- 2198
Query 1495 GATAATGCCAATGCTGTGAAAAGTGAAATCCCAACCAAAGACGTCCCTATTGTCC-ACACTGAGACCAAGACCA 1567
||||| ||.||..|| ||||
Sbjct 2199 --------------------------------------------------TGTCCTACCCTCGGA--AAGA--- 2217
Query 1568 TCACTTATGAGGCTGCCCAGACTGACGACAACAGTGGAGACTTGGACCCAGGAGTCTTGCTGACAGCTCAAACT 1641
.|||.|| |||| .||| |||| ||.||||
Sbjct 2218 --------AAGGTTG------------------GTGG---------GCCA-GAGT-TTTCTGA----------- 2243
Query 1642 ATCACATCTGAGACCCCAA-GCAGCACCACCACAACTCAAATTACCAAGACTGTAAAAGGTGGGATTTCAGAGA 1714
|| |||| ||||| |...||.||||
Sbjct 2244 -----------------AATGCAG---------------------CAAGA-------------GTCCTCGGAGA 2266
Query 1715 CACGTATTGAAAAGAGAATTGTGATCACAGGAGATGCTGATATTGACCATGATCAGGTCCTTGTACAAGCCATC 1788
....||||| |||| |||.|||||| |.|||| |.||| |.|||
Sbjct 2267 TCTTTATTG---AGAG--------TCAAAGGAGA----------GGCCAT-------TTCTT-------CTATC 2305
Query 1789 AAGGAGGCAAAGGAGCAGCACCCAGACATGTCAGTGACCAAGGTGGTCGTCCACCAGGAGACCGAGATTGCTGA 1862
||
Sbjct 2306 AA------------------------------------------------------------------------ 2307
Query 1863 TGAG 1866
Sbjct 2308 ---- 2307
