Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_10934
Subject:
NM_001253372.1
Aligned Length:
3641
Identities:
448
Gaps:
3157

Alignment

Query    1  ATGGCAAATGGTGGCGGCGGCGGCGGCGGCAGCA---GCGGCGGCGGCGGCGGCGGCGGAGGCAGCAGTCTTAG  71
            ||||||||.|||||||||||||||||||||||||   |||||||||||||||||||||||||||||.|||||||
Sbjct    1  ATGGCAAACGGTGGCGGCGGCGGCGGCGGCAGCAGCGGCGGCGGCGGCGGCGGCGGCGGAGGCAGCGGTCTTAG  74

Query   72  AATGAGTAGCAATATCCACGCGAACCATCTCAGCCTAGACGCGTCCTCCTCCTCCTCCTCCTCCTCTTCCTCTT  145
            ||||||.||||||||||||||||||||||||||||||||||||||||||||||||||.||||||   |||||||
Sbjct   75  AATGAGCAGCAATATCCACGCGAACCATCTCAGCCTAGACGCGTCCTCCTCCTCCTCTTCCTCC---TCCTCTT  145

Query  146  CTTCTTCTTCCTCCTCCTCTTCCTCCTCGTCCTCGGTCCACGAGCCCAAGATGGATGCGCTCATCATCCCGGTG  219
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct  146  CTTCTTCTTCCTCCTCCTCTTCCTCCTCGTCCTCGGTCCACGAGCCCAAGATGGATGCGCTCATCATACCGGTG  219

Query  220  ACCATGGAGGTGCCGTGCGACAGCCGGGGCCAACGCATGTGGTGGGCTTTCCTGGCCTCCTCCATGGTGACTTT  293
            |||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||
Sbjct  220  ACCATGGAGGTGCCGTGCGACAGCCGGGGCCAACGCATGTGGTGGGCTTTCTTGGCCTCCTCCATGGTGACTTT  293

Query  294  CTTCGGGGGCCTCTTCATCATCTTGCTCTGGCGGACGCTCAAGTACCTGTGGACCGTGTGCTGCCACTGCGGGG  367
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct  294  CTTCGGGGGCCTCTTCATCATCTTGCTCTGGCGGACGCTCAAGTACCTGTGGACCGTTTGCTGCCACTGCGGGG  367

Query  368  GCAAGACGAAGGCCACCC---------ACTTTGGGTCC--CC--GGAAATGCCAC---CAGCAGC---------  416
            ||||||||||||...|||         ||..|||.|||  ||  |.|.|||..||   ||  |||         
Sbjct  368  GCAAGACGAAGGAGGCCCAGAAGATAAACAATGGCTCCAGCCAGGCAGATGGTACTCTCA--AGCCAGTGGACG  439

Query  417  -----GCGGAGCTGG----AGCGGGAGTCCGC--------------------CTGAGGCCGCGGT-----TTTA  456
                 |.||||.|||    |||.|..|||.||                    ||| |||.|.|||     |.|.
Sbjct  440  AAAAAGAGGAGGTGGTGGCAGCCGAGGTCGGCTGGATGACATCTGTGAAGGACTG-GGCAGGGGTGATGATATC  512

Query  457  CGCGGAGCGTCTTCCCTGGCGCTCGAGGTGGCTAGA--------TGTCGTCGGCTT------------------  504
            |||..||     .|.|||.|        |||| |||        |||..|.|.|||                  
Sbjct  513  CGCCCAG-----ACACTGAC--------TGGC-AGAGTCCTGGTTGTGTTAGTCTTTGCTCTCAGCATTGGTGC  572

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct  573  CCTCGTAATATACTTCATAGACTCGTCAAACCCAATAGAATCCTGCCAGAATTTCTACAAAGATTTCACATTAC  646

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct  647  AGATCGACATGGCTTTCAACGTGTTCTTCCTCCTCTACTTTGGCTTGCGGTTTATTGCAGCCAACGATAAGCTG  720

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct  721  TGGTTCTGGCTGGAAGTGAATTCAGTAGTAGATTTCTTCACAGTCCCTCCTGTGTTTGTGTCTGTGTACTTAAA  794

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct  795  CAGAAGTTGGCTTGGCTTGAGATTTTTAAGAGCTCTCAGACTGATACAGTTTTCAGAGATTTTGCAGTTTCTGA  868

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct  869  ATATCCTTAAAACAAGTAACTCCATCAAGCTGGTGAATCTGCTCTCCATATTTATCAGCACGTGGCTGACTGCA  942

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct  943  GCTGGATTCATCCACTTGGTGGAGAATTCAGGGGACCCATGGGAAAATTTCCAAAACAACCAGGCACTTACGTA  1016

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 1017  CTGGGAATGTGTCTACTTACTCATGGTCACAATGTCTACAGTGGGTTATGGGGACGTTTATGCAAAAACCACAC  1090

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 1091  TTGGACGCCTCTTCATGGTCTTCTTCATCCTCGGGGGACTGGCCATGTTTGCCAGCTACGTCCCTGAAATCATA  1164

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 1165  GAGTTAATAGGAAACCGCAAGAAATACGGGGGCTCCTATAGCGCGGTTAGTGGAAGAAAGCACATTGTAGTCTG  1238

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 1239  TGGACACATTACTCTGGAGAGTGTCTCTAACTTCCTGAAGGACTTTCTGCACAAGGACCGGGATGATGTCAACG  1312

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 1313  TGGAGATTGTCTTTCTTCACAACATCTCCCCTAACCTTGAGCTTGAGGCTCTGTTCAAACGGCATTTCACTCAG  1386

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 1387  GTGGAGTTTTATCAGGGCTCTGTCCTCAATCCACATGATCTTGCCAGAGTCAAGATAGAGTCAGCAGATGCATG  1460

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 1461  CCTGATCCTTGCCAATAAGTATTGCGCTGACCCGGATGCAGAAGATGCCTCCAACATCATGAGAGTGATCTCCA  1534

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 1535  TCAAAAACTACCACCCAAAGATCAGGATCATCACTCAGATGCTGCAGTATCACAACAAGGCCCATCTGCTCAAC  1608

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 1609  ATCCCCAGCTGGAACTGGAAAGAGGGTGATGACGCAATATGCCTTGCAGAGCTCAAGTTGGGTTTCATAGCCCA  1682

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 1683  GAGCTGTCTGGCTCAAGGCCTCTCCACAATGCTTGCCAATCTCTTCTCTATGAGGTCATTCATAAAGATTGAGG  1756

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 1757  AAGACACATGGCAGAAATACTACTTGGAAGGAGTCTCCAATGAAATGTACACAGAATATCTCTCCAGTGCCTTC  1830

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 1831  GTGGGTCTGTCCTTCCCTACTGTTTGTGAGCTGTGTTTTGTGAAGCTTAAGCTCCTGATGATAGCCATTGAGTA  1904

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 1905  CAAGTCTGCCAACAGAGAGAGCCGAATATTAATTAACCCTGGGAACCACCTTAAGATCCAAGAAGGTACTTTAG  1978

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 1979  GATTTTTCATCGCAAGTGATGCCAAAGAAGTTAAAAGGGCATTTTTTTACTGCAAGGCCTGTCATGATGACGTC  2052

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 2053  ACAGATCCCAAAAGAATTAAAAAATGTGGCTGCAGGCGGCTCAAGGTTGAAGCTAGAGCCCGCTATCACAAAGA  2126

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 2127  CCCATTTATGCACAAGAATGCGACTCCCAATTCTCCACACGTGCCCAAGCCAGTTGAAGATGAGCAGCCGCCAA  2200

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 2201  CCCTGTCACCAAAAAAAAAACAACGTAATGGGGGCATGAGGAACTCGCCCAACACCTCCCCGAAGCTGATGAGG  2274

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 2275  CATGACCCCTTGTTAATTCCTGGCAATGATCAGATTGACAACATGGACTCCAATGTGAAAAAGTACGACTCCAC  2348

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 2349  TGGAATGTTTCACTGGTGTGCACCCAAGGAGATTGAGAAAGTCATCTTGACTCGAAGTGAAGCTGCCATGACTG  2422

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 2423  TCCTGAGTGGCCATGTCGTAGTCTGCATCTTTGGGGATGTCAGCTCAGCCCTGATTGGCCTCCGGAACCTGGTG  2496

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 2497  ATGCCACTTCGTGCTAGCAACTTTCACTATCATGAGCTCAAACACATTGTGTTTGTGGGCTCCATTGAGTACCT  2570

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 2571  CAAGAGGGAGTGGGAAACACTGCACAACTTCCCGAAAGTGTCCATATTGCCTGGTACACCATTAAGTCGGGCTG  2644

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 2645  ATTTAAGGGCTGTCAACATCAACCTCTGTGACATGTGCGTTATCCTGTCAGCCAATCAGAATAATATTGATGAT  2718

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 2719  ACTTCGCTTCAGGACAAGGAATGCATCTTGGCGTCACTCAACATCAAATCTATGCAGTTTGATGACAGCATCGG  2792

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 2793  GGTCTTGCAGGCTAATTCCCAAGGATTCACACCTCCTGGAATGGACAGATCATCACCCGACAACAGCCCAGTGC  2866

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 2867  ACGGGATGTTACGCCAGCCGTCCATCACAACTGGGGTCAACATTCCCATCATCACGGAACTCGTGAATGATACC  2940

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 2941  AATGTTCAGTTTTTGGACCAAGACGATGACGATGACCCTGACACAGAGCTGTACCTCACACAGCCCTTTGCTTG  3014

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 3015  TGGGACAGCATTTGCCGTCAGCGTCCTGGACTCACTCATGAGCGCGACATACTTCAATGACAATATCCTCACCC  3088

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 3089  TAATACGGACCCTGGTGACAGGAGGAGCCACACCAGAGCTCGAGGCTCTAATAGCTGAGGAGAATGCACTTCGA  3162

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 3163  GGAGGCTACAGCACTCCGCAGACATTGGCCAACAGGGACCGTTGCCGAGTGGCCCAGTTAGCCCTGTTAGATGG  3236

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 3237  TCCCTTTGCAGACTTAGGGGATGGTGGTTGTTATGGTGATCTGTTCTGCAAAGCTCTGAAAACATATAATATGC  3310

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 3311  TTTGTTTTGGAATTTACCGGCTGAGAGATGCCCACCTCAGCACCCCCAGCCAGTGTACAAAAAGGTACGTCATC  3384

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 3385  ACCAATCCTCCCTACGAGTTTGAGCTCGTACCAACAGACCTGATCTTCTGCCTGATGCAGTTTGACCACAACGC  3458

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 3459  TGGCCAATCCCGGGCCAGTCTGTCTCATTCCTCCCACTCCTCACAGTCGTCCAGTAAGAAGAGCTCCTCCGTCC  3532

Query  505  --------------------------------------------------------------------------  504
                                                                                      
Sbjct 3533  ACTCCATCCCGTCCACAGCAAATCGGCCGAACCGGCCCAAGTCCAGGGAGTCCCGCGACAAACAGAACAGAAAA  3606

Query  505  ---------------  504
                           
Sbjct 3607  GAAATGGTTTACAGA  3621

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