Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_10935
- Subject:
- XR_001742064.2
- Aligned Length:
- 3991
- Identities:
- 1873
- Gaps:
- 2032
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCCAGCGTCGGCTCCCCGGCGGGCGGTGCGGGCCCTCCCACTCTACCCCGCGCCGTCTCACGGCCCCGGCCCTA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCTTCACCCCGACTACCCGGCGTGCGCGTCCTCCTGCCGGCCTGCAGGCCCGGGGCCTCCGCCTGCTTCCCCAC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGCTGCTCCTTGCGGCCCCGCTTGCGTTCACGCTGTCGCCCGGGCCGGCGCGGCCGCGGGCAACCGCTCCCCCT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCCACACCTACCCCGCCCCCTCCCCGCCTTTTCCGCCCTCCGGTCCCCCTCCCTCGGCCCGCTGCTGCTGCTCC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGATGAGGTGATGGCAACGGCCAACTTCGGCAAGATCCAGATCGGGATTTACGTGGAGATCAAGCGCAGCGATG 370
Query 1 -----------------ATGGTAACATCTTTAAATGAAGATAATGAAAGTGTAACTGTTGAATGGATAGAAAAT 57
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GCCGAATACATCAAGCAATGGTAACATCTTTAAATGAAGATAATGAAAGTGTAACTGTTGAATGGATAGAAAAT 444
Query 58 GGAGATACAAAAGGCAAAGAGATTGACCTGGAGAGCATCTTTTCACTTAACCCTGACCTTGTTCCTGATGAAGA 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GGAGATACAAAAGGCAAAGAGATTGACCTGGAGAGCATCTTTTCACTTAACCCTGACCTTGTTCCTGATGAAGA 518
Query 132 AATTGAACCCAGTCCAGAAACACCTCCACCTCCAGCATCCTCAGCCAAAGTAAACAAAATTGTAAAGAATCGAC 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AATTGAACCCAGTCCAGAAACACCTCCACCTCCAGCATCCTCAGCCAAAGTAAACAAAATTGTAAAGAATCGAC 592
Query 206 GGACTGTAGCTTCTATTAAGAATGACCCTCCTTCAAGAGATAATAGAGTGGTTGGTTCAGCACGTGCACGGCCC 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GGACTGTAGCTTCTATTAAGAATGACCCTCCTTCAAGAGATAATAGAGTGGTTGGTTCAGCACGTGCACGGCCC 666
Query 280 AGTCAATTTCCTGAACAGTCTTCCTCTGCACAACAGAATGGTAGTGTTTCAGATATATCTCCAGTTCAAGCTGC 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AGTCAATTTCCTGAACAGTCTTCCTCTGCACAACAGAATGGTAGTGTTTCAGATATATCTCCAGTTCAAGCTGC 740
Query 354 AAAAAAGGAATTTGGACCCCCTTCACGTAGAAAATCTAATTGTGTGAAAGAAGTAGAAAAACTGCAAGAAAAAC 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AAAAAAGGAATTTGGACCCCCTTCACGTAGAAAATCTAATTGTGTGAAAGAAGTAGAAAAACTGCAAGAAAAAC 814
Query 428 GAGAGAAAAGGAGATTGCAACAGCAAGAACTTAGAGAAAAAAGAGCCCAGGACGTTGATGCTACAAACCCAAAT 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GAGAGAAAAGGAGATTGCAACAGCAAGAACTTAGAGAAAAAAGAGCCCAGGACGTTGATGCTACAAACCCAAAT 888
Query 502 TATGAAATTATGTGTATGATCAGAGACTTTAGAGGAAGTTTGGATTATAGACCATTAACAACAGCAGATCCTAT 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TATGAAATTATGTGTATGATCAGAGACTTTAGAGGAAGTTTGGATTATAGACCATTAACAACAGCAGATCCTAT 962
Query 576 TGATGAACATAGGATATGTGTGTGTGTAAGAAAACGACCACTCAATAAAAAAGAAACTCAAATGAAAGATCTTG 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGATGAACATAGGATATGTGTGTGTGTAAGAAAACGACCACTCAATAAAAAAGAAACTCAAATGAAAGATCTTG 1036
Query 650 ATGTAATCACAATTCCTAGTAAAGATGTTGTGATGGTACATGAACCAAAACAAAAAGTAGATTTAACAAGGTAC 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 ATGTAATCACAATTCCTAGTAAAGATGTTGTGATGGTACATGAACCAAAACAAAAAGTAGATTTAACAAGGTAC 1110
Query 724 CTAGAAAACCAAACATTTCGTTTTGATTATGCCTTTGATGACTCAGCTCCTAATGAAATGGTTTACAGGTTTAC 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CTAGAAAACCAAACATTTCGTTTTGATTATGCCTTTGATGACTCAGCTCCTAATGAAATGGTTTACAGGTTTAC 1184
Query 798 TGCTAGACCACTAGTGGAAACTATATTTGAAAGGGGAATGGCTACATGCTTTGCTTATGGGCAGACTGGAAGTG 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TGCTAGACCACTAGTGGAAACTATATTTGAAAGGGGAATGGCTACATGCTTTGCTTATGGGCAGACTGGAAGTG 1258
Query 872 GAAAAACTCATACTATGGGTGGTGACTTTTCAGGAAAGAACCAAGATTGTTCTAAAGGAATTTATGCATTAGCA 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GAAAAACTCATACTATGGGTGGTGACTTTTCAGGAAAGAACCAAGATTGTTCTAAAGGAATTTATGCATTAGCA 1332
Query 946 GCTCGAGATGTCTTTTTAATGCTAAAGAAGCCAAACTATAAGAAGCTAGAACTTCAAGTATATGCAACCTTCTT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GCTCGAGATGTCTTTTTAATGCTAAAGAAGCCAAACTATAAGAAGCTAGAACTTCAAGTATATGCAACCTTCTT 1406
Query 1020 TGAAATTTATAGTGGAAAGGTGTTTGACTTGCTAAACAGGAAAACAAAATTAAGAGTTCTAGAAGATGGAAAAC 1093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 TGAAATTTATAGTGGAAAGGTGTTTGACTTGCTAAACAGGAAAACAAAATTAAGAGTTCTAGAAGATGGAAAAC 1480
Query 1094 AGCAGGTTCAAGTGGTGGGATTACAGGAACGGGAGGTCAAATGTGTTGAAGATGTACTGAAACTCATTGACATA 1167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 AGCAGGTTCAAGTGGTGGGATTACAGGAACGGGAGGTCAAATGTGTTGAAGATGTACTGAAACTCATTGACATA 1554
Query 1168 GGCAACAGTTGCAGAACATCCGGTCAAACATCTGCAAATGCACATTCATCTCGGAGCCATGCAGTGTTTCAGAT 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GGCAACAGTTGCAGAACATCCGGTCAAACATCTGCAAATGCACATTCATCTCGGAGCCATGCAGTGTTTCAGAT 1628
Query 1242 TATTCTTAGAAGGAAAGGAAAACTACATGGCAAATTTTCTCTCATTGATTTGGCTGGAAATGAAAGAGGAGCTG 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TATTCTTAGAAGGAAAGGAAAACTACATGGCAAATTTTCTCTCATTGATTTGGCTGGAAATGAAAGAGGAGCTG 1702
Query 1316 ATACTTCCAGTGCGGACAGGCAAACTAGGCTTGAAGGTGCTGAAATTAATAAAAGCCTTTTAGCACTCAAGGAG 1389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 ATACTTCCAGTGCGGACAGGCAAACTAGGCTTGAAGGTGCTGAAATTAATAAAAGCCTTTTAGCACTCAAGGAG 1776
Query 1390 TGCATCAGAGCCTTAGGTAGAAATAAACCTCATACTCCTTTCCGTGCAAGTAAACTCACTCAGGTGTTAAGAGA 1463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 TGCATCAGAGCCTTAGGTAGAAATAAACCTCATACTCCTTTCCGTGCAAGTAAACTCACTCAGGTGTTAAGAGA 1850
Query 1464 TTCTTTCATAGGTGAAAACTCTCGTACCTGCATGATTGCCACAATCTCTCCAGGAATGGCATCCTGTGAAAATA 1537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 TTCTTTCATAGGTGAAAACTCTCGTACCTGCATGATTGCCACAATCTCTCCAGGAATGGCATCCTGTGAAAATA 1924
Query 1538 CTCTTAATACATTAAGATATGCAAATAGG-----------GT----CA-----AAGAATTGA-----------C 1580
||||||||||||||||||||||||||||| || || || |.|||| |
Sbjct 1925 CTCTTAATACATTAAGATATGCAAATAGGTATGAGAGATAGTTCTCCATTTTGAA-ATTTGAGGGGAGTACAGC 1997
Query 1581 TGTAGAT-----------CCAACTGC----TG-----------CTGG-------TGATGTTC------------ 1609
.|||.|| ..|.|||| || |||| ||.|||||
Sbjct 1998 AGTACATAGTATAATTTAATATCTGCCTCGTGCGCCACCCCGCCTGGCCCTTTCTGGTGTTCTATATGGGTTAC 2071
Query 1610 ---------------------GTCCAATAATGCACCATCCACCAAACCAGATTGATGAC-------TTAGAGAC 1655
|||..|||| .||..|| |||| ||| ||.|| |||.|||.
Sbjct 2072 ATTTTGTTATTCATATTAATAGTCTTATAA-ACATTAT-----AAAC---ATT-ATAACTGGGTTTTTACAGAT 2135
Query 1656 ACAGTGGGGTGTGGGGAGTTCCCCTCAGAGAGATG-AT---------CTAAA--ACTT---------------- 1701
|.| .||| |||| ||| || ||||| |.||
Sbjct 2136 AGA----------AGGA--------CAGA---ATGCATTACAGACTACTAAAGCAGTTTATTCTGTATAGTCAT 2188
Query 1702 -------CTTTGTGAAC--------AAAATGAAGA------------------AGAAGTCTCT---CCACAG-- 1737
||||| |||| |.||||...| |||..|.|.| ||||.|
Sbjct 2189 GAAATGCCTTTG-GAACTTTGAATTATAATGGGCATATTTATATTTGATCCATAGATTTTTTTTTCCCACTGCT 2261
Query 1738 -TTG------TTTACTTTCCAC------------GAA--GCTGT-----------------TTCACAAATGGTA 1773
||| ||||.||.|||| ||| .|||| |||.||||||.||
Sbjct 2262 CTTGAGTGACTTTATTTACCACTGCTCTTATTTTGAATGACTGTTTAGTGTTAAATTTCTCTTCTCAAATGTTA 2335
Query 1774 GAAATG-GA---------AGA-ACAA--------GTTGTAGAAGATC----------ACAGGGCAGTGTTC--- 1815
.|..|| || ||| |||| .||||| ||| |.| |||||..||
Sbjct 2336 AATTTGTGATTTTAACCTAGAGACAAAATTCCTCTTTGTA----ATCCATTTCTAGTATA--GCAGTTCTCTTA 2403
Query 1816 ------------CAGGAATCT---ATTCGGTGGTTAGAAGATGAAAAG-----GCCC----TCTTAG----AGA 1861
|||...||| .||.|.|||.| ||||| |.|| ||||.| | |
Sbjct 2404 ATTCAAGTATAGCAGTTCTCTTAATTTTGCTGGAT--------AAAAGTATCTGTCCTATATCTTTGTTTTA-A 2468
Query 1862 TGACTGAAGAAGTAG-----------------ATTATGATGT-CGATTCATATGC-TACACA-----ACTTGAA 1911
|.|||...|||.| | ||||..|||| ..||.|.||||| ||.|.| ||.|.||
Sbjct 2469 TCACTATGGAAAT-GTTATTTTTTAATCTTTTATTAAAATGTAAAATACTTATGCATATAGAAAAGTACCTAAA 2541
Query 1912 GCTATTCTTGAGCAA-AAAATAGACATTTTAACTGA-ACTGCGGGATAAAGTGAAATCTTTCCGTGCAGCTCTA 1983
| |||...|||..|| .||||.|| |||..|| ||| .|||||||.|||.|| |.|| ||
Sbjct 2542 G-TATAAGTGATTAATTAAATGGA-----TAATGGATACT----TATAAAGTAAAAACT---CCTG----TC-- 2596
Query 1984 CAAGAGG---AGGAACAAGCCAGCAAGCAAATCA-----ACCCGAAGAG--ACCCC--GTGC-CCTT------- 2037
|..|| .||||..|| ||| ||.| .|||.||.|| .|||| |||| ||||
Sbjct 2597 --ATTGGTTTGGGAAATAG--AGC------ATTATTGGCCCCCCAAAAGGTTCCCCATGTGCTCCTTCCTGTTC 2660
Query 2038 -------------------------------------------------------------------------- 2037
Sbjct 2661 ACAAATCCTGAATAACATGCCTTATTCATCTGTCTCTACCCTGATGTAACCCATGGATTAACTTCTGTGGAATA 2734
Query 2038 -------------------------------------------------------------------------- 2037
Sbjct 2735 CTTTTCTTGTTTTTTTTTTTCCTCTTTTTAAAAATAATTTTACTATGAATCTATTTCTGAGTAACATAGGTAGC 2808
Query 2038 -------------------------------------------------------------------------- 2037
Sbjct 2809 TGATTTGAACATTACACAATGGTATTATAACCCCCCGGGTTTTTTTTGCATCTTGTTTCTAAAGGGATTTTCTT 2882
Query 2038 -------------------------------------------------------------------------- 2037
Sbjct 2883 AATGGTAGTAAACACTGTTGGACAATATCAACCTATTGAGCTTTTGCAAAAAAAGTGATTAAAATATAATCACT 2956
Query 2038 -------------------------------------------------------------------------- 2037
Sbjct 2957 TCTTTAAAAATGTAATAGGGCCAGGCGCGGTGGCTTACACCTTTAATCCCAGTGCTTTTGGTGGCCCAGGCGGG 3030
Query 2038 -------------------------------------------------------------------------- 2037
Sbjct 3031 TGGATTGCTTGAGCCCAGAAATTCGAGACCAGTCTGGGCAACATAGCAAAACCCCGTCTCTATAAAAAATACAA 3104
Query 2038 -------------------------------------------------------------------------- 2037
Sbjct 3105 AAATTAGCCTGGCATGGTGGCATGCATCTGTAGTCCCAGCCACTTGGGGGGCTGAGGTGAGAGGATTGCTTGAA 3178
Query 2038 -------------------------------------------------------------------------- 2037
Sbjct 3179 CCTGGAATGTTGAGTCTACAGTGAGTTGTAATTGCACCACTGCACTCTAGCCTGGGCAACAGAGCAAGACCTTG 3252
Query 2038 -------------------------------------------------------------------------- 2037
Sbjct 3253 TCTTAAAAAAAAAAAAAGTAATAGAACTACATTTCTAAGTATGAACTATTATATTTTGTAAATTTAATCCCTTT 3326
Query 2038 -------------------------------------------------------------------------- 2037
Sbjct 3327 AAAGTTTGAATTATGAGCTCCTAGCTGCAAATCCTTATTGTGTTAGTTTTAATTGATCTTGGTAATTAACGTTT 3400
Query 2038 -------------------------------------------------------------------------- 2037
Sbjct 3401 TTGATATGTGGGATTTTTATCATTAATTTAAAATGTTTCTTATTTCAGAATAATTCTTGAGAAAGATGAGGAAC 3474
Query 2038 -------------------------------------------------------------------------- 2037
Sbjct 3475 AGCCTAGTGTAATAGATTCTTGCCATGTTGTAGAATTAAAACAAACAAAACCCCTCTGTTTCTTAAGATTTGAA 3548
Query 2038 -------------------------------------------------------------------------- 2037
Sbjct 3549 ACTACAAAAGATTCCTCCCTAATATTGTGAAAATGCTATATCTAGCTGTTCCTCTAGTTCACTTAGGTCAAAGT 3622
Query 2038 -------------------------------------------------------------------------- 2037
Sbjct 3623 AAAATGTTTTAACCTACTGTTATATCATGTAACTCACTTGCAACATGACTAACCATCTGGGACACTGTATTAAT 3696
Query 2038 -------------------------------------------------------------------------- 2037
Sbjct 3697 CGGTTCTCACACTGCTACAAAGGAATACCCGAGACTGGGTAATTTATGAAGGTTTAATTGACTCACAGTTCAGC 3770
Query 2038 -------------------------------------------------------------------------- 2037
Sbjct 3771 ATGGCCACAGAGGCTTCAGGAAACTTACAGTCATGGTGGAAGGTGAAGGGGAAGCAAGGCACCTTCACCAGGCA 3844
Query 2038 --------------------------------------------------------------------- 2037
Sbjct 3845 GCAGGAAGGAGAAGTGCCAAGCAAACTGGGGAAGAGCCTCCTATAAAACCATTAGATCTTGTGAGAACT 3913
