Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_10957
- Subject:
- XR_001743420.1
- Aligned Length:
- 4886
- Identities:
- 987
- Gaps:
- 3875
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTTAATTTCAACACAGTGTTCGACTTATTGCTTGAAGCTACCGCAGCATAAAACTCGTCTTCGAATGGAAAAT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTGACCAACTTCTATGAGGGGCTGCAGCCAGCGGTCTGTCGCGCGTGCCTGTGTGCCCGAGGAGCCGCCCCGGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GAGAAGACCCGGCGCGGAGTTGTTCCCCCAGGGAGGATCCGCAGCCCAGCCGAGGGGGTCGGGCGGCCTGGCTA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGCAGGACCCAGCCCCGCAGCCGCGGACTCCCAGCGGCGGCGAAGTTTGGCTGCTGAGCGGCGCGGCGCCGGAC 296
Query 1 ------------------ATGCCCGTGGGGGGCCTGTTGCCGCTCTTCAGCAGCCCCGCGGGCGGCGTCCTGGG 56
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CACTGGACAGCGGGAGCGATGCCCGTGGGGGGCCTGTTGCCGCTCTTCAGCAGCCCCGCGGGCGGCGTCCTGGG 370
Query 57 CGGGGGGCTCGGCGGCGGCGGTGGCAGGAAGGGGTCGGGCCCCGCCGCCCTCCGCCTGACGGAGAAGTTCGTGC 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CGGGGGGCTCGGCGGCGGCGGTGGCAGGAAGGGGTCGGGCCCCGCCGCCCTCCGCCTGACGGAGAAGTTCGTGC 444
Query 131 TGCTGCTGGTATTCAGCGCCTTCATCACGCTCTGCTTCGGGGCGATCTTCTTCCTGCCAGACTCCTCCAAGCTG 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TGCTGCTGGTATTCAGCGCCTTCATCACGCTCTGCTTCGGGGCGATCTTCTTCCTGCCAGACTCCTCCAAGCTG 518
Query 205 CTCAGCGGGGTCCTGTTCCACTCCAGCCCCGCCTTGCAGCCGGCCGCCGACCACAAGCCCGGGCCCGGGGCGCG 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CTCAGCGGGGTCCTGTTCCACTCCAGCCCCGCCTTGCAGCCGGCCGCCGACCACAAGCCCGGGCCCGGGGCGCG 592
Query 279 CGCCGAGGACGCGGCCGAGGGGCGAGCCCGGCGCCGCGAGGAGGGGGCACCCGGGGACCCGGAGGCCGCCCTGG 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CGCCGAGGACGCGGCCGAGGGGCGAGCCCGGCGCCGCGAGGAGGGGGCACCCGGGGACCCGGAGGCCGCCCTGG 666
Query 353 AGGACAACTTGGCCAGGATCCGCGAAAACCACGAGCGGGCTCTCAGGGAAGCCAAGGAGACCCTGCAGAAGCTG 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AGGACAACTTGGCCAGGATCCGCGAAAACCACGAGCGGGCTCTCAGGGAAGCCAAGGAGACCCTGCAGAAGCTG 740
Query 427 CCCGAGGAGATCCAAAGAGACATCCTACTGGAGAAGAAGAAGGTGGCCCAGGACCAGCTGCGTGACAAGGCGCC 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CCCGAGGAGATCCAAAGAGACATCCTACTGGAGAAGAAGAAGGTGGCCCAGGACCAGCTGCGTGACAAGGCGCC 814
Query 501 GTTCAGAGGCCTGCCCCCGGTGGACTTCGTGCCCCCAATCGGGGTGGAGAGCCGGGAGCCCGCCGACGCCGCCA 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GTTCAGAGGCCTGCCCCCGGTGGACTTCGTGCCCCCAATCGGGGTGGAGAGCCGGGAGCCCGCCGACGCCGCCA 888
Query 575 TCCGCGAGAAAAGGGCAAAGATCAAAGAGGAAATTGAAGCCAGGAAGGGGCAAGCAAATTGCCCAGGGTCGAGC 648
|||||||||||||||||||||||||||
Sbjct 889 TCCGCGAGAAAAGGGCAAAGATCAAAG----------------------------------------------- 915
Query 649 AGCTCCTGCGAGGTTGAAATCCAGATGATGAAACATGCTTGGAATAATTATAAAGGTTATGCCTGGGGATTAAA 722
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 ----------------------AGATGATGAAACATGCTTGGAATAATTATAAAGGTTATGCCTGGGGATTAAA 967
Query 723 TGAACTCAAACCTATATCAAAAGGAGGCCATTCAAGCAGTTTGTTTGGTAACATCAAAGGAGCAACTATAGTAG 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 TGAACTCAAACCTATATCAAAAGGAGGCCATTCAAGCAGTTTGTTTGGTAACATCAAAGGAGCAACTATAGTAG 1041
Query 797 ATGCCCTGGATACACTTTTTATTATGGAAATGAAACATGAATTTGAAGAAGCAAAATCATGGGTTGAAGAAAAT 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 ATGCCCTGGATACACTTTTTATTATGGAAATGAAACATGAATTTGAAGAAGCAAAATCATGGGTTGAAGAAAAT 1115
Query 871 TTAGATTTTAATGTGAATGCTGAAATTTCTGTCTTTGAAGTAAATATACGCTTTGTTGGTGGACTACTCTCAGC 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 TTAGATTTTAATGTGAATGCTGAAATTTCTGTCTTTGAAGTAAATATACGCTTTGTTGGTGGACTACTCTCAGC 1189
Query 945 CTACTATCTGTCTGGAGAAGAGAT--TTTTCGAAAGAA----------------------AGCAGTGGAACTTG 994
|||||||||||||||||||||| | |.||.|||.||| |||||| .||.
Sbjct 1190 CTACTATCTGTCTGGAGAAGAG-TGGTATTGGAAGGAACTGGCCCTGGGCCTCTGGAGGCAGCAGT----ATTC 1258
Query 995 GGGTAAAATT--GCTACCTGCAT------TTCATACTC-----CC-----TCTGGAATACCTTGGGCA---TTG 1047
.||.|.|||| |...||||||| ||.||.|.| || ||.||||..|| || |||
Sbjct 1259 TGGCAGAATTTGGAACCCTGCATTTGGAGTTTATGCACTTGAGCCACTTATCAGGAAACCC-----CATCTTTG 1327
Query 1048 CTGAATATGAAAAGGTGGATGTGCAATATCCCAAGGGCTA----------TGG----------AGGC---TACC 1098
| ||||||||| .||| |||||.|.||..| || ||| |||| ||.|
Sbjct 1328 C------TGAAAAGGT-AATG---AATATTCGAACAG-TACTGAACAAACTGGAAAAACCACAAGGCCTTTATC 1390
Query 1099 ATA----------------------------------------------------------------------- 1101
.||
Sbjct 1391 CTAACTATCTGAATCCCAGTAGTGGACAGTGGGGTCAACATCATGTATCAGTTGGAGGACTTGGAGACAGCTTC 1464
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1465 TATGAGTATTTGCTGAAGGCCTGGTTAATGTCTGACAAGACAGATCTGGAAGCTAAGAAGATGTATTTTGATGC 1538
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1539 TGTTCAGGCTATCGAGACTCATTTGATCCGCAAGTCTAGCAGCGGACTAACTTATATCGCAGAGTGGAAAGGGG 1612
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1613 GCCTCCTGGAGCACAAGATGGGCCACCTGACCTGCTTCGCGGGGGGCATGTTCGCACTCGGGGCTGATGCAGCT 1686
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1687 CCCGAAGGCATGGCCCAACACTACCTTGAACTCGGGGCTGAAATTGCCCGTACTTGTCATGAATCATATAATCG 1760
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1761 AACATTTATGAAACTGGGACCAGAAGCTTTCAGATTTGATGGTGGTGTTGAAGCCATCGCTACAAGACAAAATG 1834
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1835 AAAAATACTACATCTTACGGCCAGAAGTTATGGAGACTTACATGTATATGTGGAGACTGACTCATGATCCAAAG 1908
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1909 TACAGGAAATGGGCCTGGGAAGCCGTAGAGGCCTTGGAAAACCATTGCAGAGTGAATGGAGGCTATTCAGGCCT 1982
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1983 AAGGGATGTTTACCTTCTTCATGAGAGTTATGATGATGTGCAGCAGAGTTTCTTCCTGGCAGAGACATTGAAAT 2056
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2057 ATTTGTACCTAATATTTTCTGACGACGATCTTCTTCCACTGGAGCATTGGATCTTCAATAGCGAGGCACATCTT 2130
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2131 CTCCCTATCCTCCCTAAAGATAAAAAGGAAGTTGAAATCAGAGAGGAATAAAAAGACATTTTATATTTTATTCT 2204
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2205 GCTCCATTCCCTTCACTGTATACCTTAATAATTCCTTTTCTGGTAATCAGGCACATGATGAACTTTGATTAGTA 2278
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2279 GGTCTGTGATTAAGTTCTTAAATTGTTTTGCAGTCTTTTATGTTTATTATCATAGGTATAGGTGGACCTAAATT 2352
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2353 CCTTATCATATCCTTTATTAATTCAGCCAGTGTATCCACCAGTTTTTTGTTTATGTTTTTAAGTAACCTATTAT 2426
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2427 CTCTGGATTTCATGAAGGTGTAATATCGTTTTTGTTAAACTGAATAGAATTGTATAGCGATGACCTCTTAATTA 2500
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2501 TAATTTGATTTGACTGCAAAACTTTTTCCTCCTCTAAGAGGAGATGATGTCTGCTTTAAGCTGTAATGTTTTGC 2574
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2575 CATGTTGCAAAAAGCCATAATAATAAGTATAAAAAAGCTTTTTCCTTTACAATTTCATGTTAATCTGGTTTGTC 2648
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2649 TGTCCACCAGAGACAGATCTTCTGTGACAGCCTCCTTATGCAGGTCTATCATTATTTGATAGAATGTCTTCTAA 2722
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2723 AATACTTCACTCACATTGTAATTCAAATTAGAAAGTCATTCCAAAAGGATCATGTCATGTTGACCTCATTTCAT 2796
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2797 CGGAACTGCAGTATATTTTTGTTGGTTAATTATATTAGTGTTTTCTATTTTGTAAATGTGTCCTTTAATTTTAC 2870
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2871 TTTAAATGCCCTGTGTCATTTCTGGATTATATACTAGTTAATTTCTTCCATTCCCCACTACACAGAGAGGTGAG 2944
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2945 CTTTCAAATTTTGCAGAGCTCTGCTATCACTGAATTACATTTATCTGAAGAAAATAGTACAACTTAATGGATTA 3018
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3019 GCTTTTGGGTTTAACTGAATATATGAAGAAATTGGGTCTGTCTAAAGAGAGGGTATTTCATATGGCTTTTAGTT 3092
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3093 CACTTGTTTGTATTTCATCTTGATTTTTTTCTTTGGAAAATAAAGCATTCTATTTGGTTCAGATTTCTCAGATT 3166
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3167 TGAAAAAGGCTCTATCTCAGATGTAGTAAATTATTTCCTTTCAGTTTGTGAAAGCAGGATTTGACTCTGAAAGA 3240
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3241 AGCTTTGCCAATTTTACTTATTCGTGATCAATCAAGGAAAATCTAATAAATTTTAGGCCAAATAAGAATATAGC 3314
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3315 ATATTTAGTATGGTTATAGTCAACACAGAGATCACAACTTAGAAGAAATATAAAGAAATGGCCACTCCCCATCC 3388
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3389 CCCACAGTCCTGGAGTAAATCAAAATCAATATATGATTCTTTTAAACATTAAGTTTGAAATAGGAATGGTTTTC 3462
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3463 TCAAGAATAGATTTGGTGTGATACCTTGTGTTTGCTTACATTGGCCCACTATATATACATATATATTTATGTAG 3536
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3537 ATATACTTCCATGAAAGGGCTAATACGATGCATATACTGAAGGGCAAGGACTTTGACCATGTCAATTTTCAGCC 3610
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3611 GAGAATGGTCAGAAAGATCAGTACAACCCCATGGATTAGGCTGAAACATATGAAATTGCTGCATTTGTAGTTTA 3684
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3685 AAAACTGTCAGCAGTTTCATATGGTTCCACCTAATATTATTGAAGACAATTATTTTCTTAGCTATCAATAGGCT 3758
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3759 TAATAGTTTTAGTTATTTTAGCTTTTGAAAGTGTTTTAAAAGATTTCCTTTATCGGACAGGACCATCTTTATGA 3832
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3833 CCTGCTTTCTGTTTTTCAATATCATACATTGGTGTATGTCAAAGAATAAATTAGTAAAATTAGTAAATGAAAAA 3906
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3907 GACTCTTCCGTACATCATTATTTCCATGCTAATGTGTGTCTGTGATCCAGAATAACTTCTCCCACTCATATCTT 3980
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 3981 CAGTTCACCTAATGAAATGAATGGATAGCAAGAGCCCTTTGTTCCCAGGACTTTAAGGCAAAATATTAAAAATT 4054
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4055 ATTGCCAAAATTAAGAATATAATGTTTGTATAAATGTCCTTGAATTTGCCATTTAAATTAACTCATTTTCTTTT 4128
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4129 CACTTTGATTTGAAAGCTGATAAGTATTTCTGCAGCAGATAGAATATTAAAATCAGGTTGTGTGTACACACTGC 4202
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4203 ACTATGAGGTACCTTGGTGTCCTGGTGTGAATAGACAAGAAGCTGTACTATATGTTGCTCTCTCAGTGGCAACA 4276
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4277 ATGAAGTTTTTGCAATTCTAGAACTTGGATTTTTTTTTAACAAAAGTCCCAAAACACCAAAAATGTAAACAAGA 4350
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4351 TAAGAGATTAATATTGTAGTGATGTAATTTAATTAAAGTTATATTTTGGGTTAATTTTAACAACTGAAGTCTTA 4424
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4425 TTGTTGAAACTTATTTTCAACAAAACTGTGCAGTTAAATTTGTATACGTATTCACATACTGAAAGATGAACCGT 4498
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4499 TAAAATAGCACTTAATTTTGTGTTTCTTCAATATGTCTTGATATACTTTGTGCAATTAATATTACACATGTAAG 4572
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4573 TTGTATGGCAGTTTACAGAACTCAATGACTTGTCATGAGGTTTTCATATGAGCTACACATTGTGTACATTGATT 4646
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4647 GTTTTTTATTTTTACATAAATCCATTCTGTCATTTTCAACTTTATATATAAATCTCCAATGTTATGGGAAACAA 4720
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 4721 TAGATTGACACATAATTTTTAAAAATTATATTTGTAAAATTTCTCTATTGTGAATAAAGTCTTTTAATATATCT 4794
Query 1102 -- 1101
Sbjct 4795 CC 4796
