Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_10962
• Subject: NM_001365210.2
• Aligned Length: 1517
• Identities: 471
• Gaps: 1003

Alignment

Query    1  ---------------------------------ATGGATGAAAGGAACCGACAG---ACTTT----AAGA----  30
                                             |||||||||||||||||||||   |||||    ||||    
Sbjct    1  ATGGGGCGGAAGAAAATACAAATCACACGCATAATGGATGAAAGGAACCGACAGGTCACTTTTACAAAGAGAAA  74

Query   31  -------------AAGAAAGGC------CTTAATG------GT---TGTGA-----------------------  53
                         |||||||.|      ||||.||      ||   |||||                       
Sbjct   75  GTTTGGATTAATGAAGAAAGCCTATGAACTTAGTGTGCTCTGTGACTGTGAAATAGCACTCATCATTTTCAACA  148

Query   54  -------------------------GAGCCCTGATGCTGACGA--TTACTT--------------------TG-  79
                                     .|||.|||||...|||.|  || |||                    || 
Sbjct  149  GCTCTAACAAACTGTTTCAATATGCTAGCACTGATATGGACAAAGTT-CTTCTCAAGTATACAGAATATAATGA  221

Query   80  ----------AGCACAGTCCACT---------------CTC----------GGAGGACAGA-------------  105
                      ||||.|..|.|||               |||          |||..|||||             
Sbjct  222  ACCTCATGAAAGCAGAACCAACTCGGATATTGTTGAGGCTCTGAACAAGAAGGAACACAGAGGGTGCGACAGCC  295

Query  106  -------------TTCA-----GCAAACT--AAAT---GAAGA---------------TAGTG----ATTTTAT  137
                         ||||     ||.||||  |.||   |||||               ||.||    ||||.||
Sbjct  296  CAGACCCTGATACTTCATATGTGCTAACTCCACATACAGAAGAAAAATATAAAAAAATTAATGAGGAATTTGAT  369

Query  138  TTTCAA-ACGAGG--------------CCCTCCTGGTCTGCCACCTCAGAACTTTTCAATGTCTGTCACAGTTC  196
                || |.||.|              |.|.|||||||||||||||||||||||||||||||||||||||||||
Sbjct  370  ----AATATGATGCGGAATCATAAAATCGCACCTGGTCTGCCACCTCAGAACTTTTCAATGTCTGTCACAGTTC  439

Query  197  CAGTGACCAGCCCCAATGCTTTGTCCTACACTAACCCAGGGAGTTCACTGGTGTCCCCATCTTTGGCAGCCAGC  270
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  440  CAGTGACCAGCCCCAATGCTTTGTCCTACACTAACCCAGGGAGTTCACTGGTGTCCCCATCTTTGGCAGCCAGC  513

Query  271  TCAACGTTAACAGATTCAAGCATGCTCTCTCCACCTCAAACCACATTACATAGAAATGTGTCTCCTGGAGCTCC  344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  514  TCAACGTTAACAGATTCAAGCATGCTCTCTCCACCTCAAACCACATTACATAGAAATGTGTCTCCTGGAGCTCC  587

Query  345  TCAGAGACCACCAAGTACTGGCAATGCAGGTGGGATGTTGAGCACTACAGACCTCACAGTGCCAAATGGAGCTG  418
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  588  TCAGAGACCACCAAGTACTGGCAATGCAGGTGGGATGTTGAGCACTACAGACCTCACAGTGCCAAATGGAGCTG  661

Query  419  GAAGCAGTCCAGTGGG-GAATGGATTTGTAAACTCAAGA----GCTTCTCCAAATTTGA-----TTGGAGCTAC  482
            |||||||||||||||| ..|||.|.|..|||    ||||    ||.||      .||||     ||..||| ||
Sbjct  662  GAAGCAGTCCAGTGGGCCCATGTACTGCTAA----AAGAAGAGGCATC------CTTGAGACTTTTAAAGC-AC  724

Query  483  TGGTGCAAATAGCTTAGGCAAAGTCATGCCTACAAAGTCTCCCCCTCCACCAGGTGGTGGTAATCTTGGAATGA  556
            ||    ||..|.||.|||.||.|         |||||.||                       ||||       
Sbjct  725  TG----AACGAACTCAGGAAAGG---------CAAAGACT-----------------------TCTT-------  755

Query  557  ACAGTAGGAAACCAGA-----TCTTCGAGTTGTCATCCCCCCTTCAAGCAAGGGCATGATGCCTCCACTAAACA  625
             .|.||.|||||||.|     ||                                                   
Sbjct  756  -AAATAAGAAACCAAAGAAAGTC---------------------------------------------------  777

Query  626  CCCAAAGGATCAGTAGTTCTCAAGCCACTCAACCTCTTGCTACCCCAGTCGTGTCTGTGACAACCCCAAGCTTG  699
                                                                                      
Sbjct  778  --------------------------------------------------------------------------  777

Query  700  CCTCCGCAAGGACTTGTGTACTCAGCAATGCCGACTGCCTACAACACTGATTATTCACTGACCAGCGCTGACCT  773
                                                                                      
Sbjct  778  --------------------------------------------------------------------------  777

Query  774  GTCAGCCCTTCAAGGCTTCAACTCGCCAGGAATGCTGTCGCTGGGACAGGTGTCGGCCTGGCAGCAGCACCACC  847
                                                                                      
Sbjct  778  --------------------------------------------------------------------------  777

Query  848  TAGGACAAGCAGCCCTCAGCTCTCTTGTTGCTGGAGGGCAGTTATCTCAGGGTTCCAATTTATCCATTAATACC  921
                                                                                      
Sbjct  778  --------------------------------------------------------------------------  777

Query  922  AACCAAAACATCAGCATCAAGTCCGAACCGATTTCACCTCCTCGGGATCGTATGACCCCATCGGGCTTCCAGCA  995
                                                                                      
Sbjct  778  --------------------------------------------------------------------------  777

Query  996  GCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCCGCCACCACCGCAGCCCCAGCCACAACCCCCGCAGCCCCAGC  1069
                                                                                      
Sbjct  778  --------------------------------------------------------------------------  777

Query 1070  CCCGACAGGAAATGGGGCGCTCCCCTGTGGACAGTCTGAGCAGCTCTAGTAGCTCCTATGATGGCAGTGATCGG  1143
                                                                                      
Sbjct  778  --------------------------------------------------------------------------  777

Query 1144  GAGGATCCACGGGGCGACTTCCATTCTCCAATTGTGCTTGGCCGACCCCCAAACACTGAGGACAGAGAAAGCCC  1217
                                                                                      
Sbjct  778  --------------------------------------------------------------------------  777

Query 1218  TTCTGTAAAGCGAATGAGGATGGACGCGTGGGTGACC  1254
                                                 
Sbjct  778  -------------------------------------  777