Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11113
Subject:
NR_104446.1
Aligned Length:
2907
Identities:
575
Gaps:
2270

Alignment

Query    1  ATGGAAACTGCATCCACAGGTGTGGCAGGTGTTTCCAGTGCCATGGACCACACCTTCTCAACAACATCAAAAGA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  TGGGGAAGGATCGTGTTACACATCTCTCATTTCTGACATCTGCTATCCACCTCAGGAGGATTCTACATATTTTA  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CTGGAATTCTTCAGAAGGAAAATGGCCACGTCACCATTTCAGAGAGCCCTGAGGAGCTGGGTACACCCGGCCCC  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  TCCTTACCAGATGTGCCTGGGATAGAGTCTCGTGGCTTATTTAGTTCTGATTCTGGAATAGAGATGACTCCTGC  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  AGAGTCCACGGAAGTGAACAAGATCTTAGCAGACCCTCTGGACCAGATGAAAGCAGAGGCCTATAAATACATTG  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  ACATAACCAGACCCGAGGAGGTGAAGCACCAAGAACAACATCACCCCGAGCTGGAAGATAAAGACTTGGACTTT  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  AAGAATAAAGACACTGACATCTCAATTAAACCTGAAGGAGTCCGTGAACCTGACAAACCAGCTCCTGTGGAGGG  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  AAAAATCATCAAGGACCATTTATTGGAAGAATCCACATTTGCTCCATACATAGATGATCTCTCTGAAGAACAGC  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  GCAGGGCTCCTCAGATCACCACCCCTGTCAAAATCACACTGACGGAAATAGAACCTTCTGTTGAAACCACTACC  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  CAAGAGAAGACCCCTGAGAAGCAAGATATATGTCTAAAGCCAAGTCCTGACACAGTCCCCACTGTCACTGTCTC  740
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  741  GGAGCCTGAAGACGACAGCCCAGGATCTATCACCCCTCCATCTTCTGGAACAGAACCATCTGCTGCAGAATCCC  814
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  815  AGGGGAAAGGCAGCATCTCCGAGGATGAGCTGATCACCGCCATCAAAGAAGCAAAGGGATTATCGTATGAAACC  888
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  889  GCCGAGAACCCACGGCCGGTGGGCCAGCTGGCCGACAGGCCCGAGGTCAAGGCCAGGTCCGGACCGCCAACCAT  962
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  963  CCCCAGCCCCCTGGACCACGAGGCCAGCAGCGCGGAGTCGGGGGACTCAGAGATCGAGCTGGTGTCCGAGGACC  1036
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1037  CCATGGCCGCGGAGGACGCGCTGCCCTCAGGCTATGTGAGCTTTGGCCACGTGGGCGGCCCGCCGCCCTCGCCC  1110
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1111  GCCTCGCCATCCATCCAGTACAGCATCCTGAGGGAGGAGCGCGAGGCCGAGCTGGACAGCGAGCTCATCATCGA  1184
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1185  GTCGTGCGACGCCTCCTCGGCCTCGGAGGAGAGCCCCAAGCGGGAGCAGGACTCACCCCCGATGAAGCCCAGCG  1258
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1259  CCCTGGATGCCATCCGGGAGGAGACTGGCGTCCGGGCCGAGGAGCGTGCGCCAAGCCGGCGGGGCCTGGCCGAG  1332
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1333  CCGGGTTCC--------TTCCTCGACTACCCCTCAACTGAGCCCCAGCCTGGCCCCGAGCTGCCCCCTGGA-GA  1397
                |||.|        ||       ||.||||||            |||.||        .|.||.||.| ||
Sbjct    1  ----GTTACATTAAGGTTT-------TATCCCTCA------------CCTTGC--------TCACCTTGCATGA  43

Query 1398  CGGAGCCCTGGAGCCTGAGACGCCCATGTTGCCACGGAAGCCTGAAGAAGACTCGAGTTCCAACCAAAGTCCTG  1471
             |||     ||||   ||                 |||||   |.||||        ||             ||
Sbjct   44  -GGA-----GGAG---GA-----------------GGAAG---GGAGAA--------TT-------------TG  67

Query 1472  CGGCCACAAAGGGCCCTGGGCCTCTAGGTCCTGGCGCCCCGCCCCCACTGCTGTTTCTCAA---TAAGCAAAAA  1542
            |       |||                                   |.||         ||   ||.|     |
Sbjct   68  C-------AAG-----------------------------------AATG---------AATTGTATG-----A  85

Query 1543  GCTATTGACCTGTTGTATTGGCGGGACATCAAGCAGACGGGCATCGTGTTTGGGAGTTTCCTGCTGCTGCTCTT  1616
            |||||||||||..||||.||||||||||||||||||||.||.||.|||||.|||||.|||||||||||||||||
Sbjct   86  GCTATTGACCTTCTGTACTGGCGGGACATCAAGCAGACTGGGATTGTGTTCGGGAGCTTCCTGCTGCTGCTCTT  159

Query 1617  CTCCCTGACCCAGTTCAGCGTGGTGAGCGTCGTGGCCTACCTGGCCCTGGCCGCACTCTCAGCCACCATCAGTT  1690
            |||||||||||||||||||||.|||||||||||.||||||||||||||||||||.|||||.|||||||||||.|
Sbjct  160  CTCCCTGACCCAGTTCAGCGTTGTGAGCGTCGTTGCCTACCTGGCCCTGGCCGCCCTCTCTGCCACCATCAGCT  233

Query 1691  TCCGCATCTACAAGTCTGTTTTACAAGCAGTGCAGAAAACCGACGAAGGCCACCCTTTCAAGGCCTACTTGGAG  1764
            ||||||||||||||||.|||.|||||||.|||||||||||.||.||.||.||||||||||||||||||.|||||
Sbjct  234  TCCGCATCTACAAGTCCGTTCTACAAGCTGTGCAGAAAACAGATGAGGGTCACCCTTTCAAGGCCTACCTGGAG  307

Query 1765  CTTGAGATCACCCTTTCTCAGGAGCAGATTCAGAAGTACACGGACTGCCTGCAGTTCTACGTGAACAGCACACT  1838
            ||.|||||||||||.||.|||||||||||.|||||||||||.||||||||||||.|.||.|||||||||||.||
Sbjct  308  CTGGAGATCACCCTGTCCCAGGAGCAGATCCAGAAGTACACAGACTGCCTGCAGCTGTATGTGAACAGCACTCT  381

Query 1839  TAAGGAACTGAGGAGGCTCTTCCTTGTCCAGGACCTGGTGGATTCTTTAAAATTTGCAGTCCTGATGTGGCTCC  1912
            .|||||.||..|||||||.|||||.||||||||||||||||||||.|||||||||||||||||.||||||||||
Sbjct  382  GAAGGAGCTACGGAGGCTTTTCCTGGTCCAGGACCTGGTGGATTCCTTAAAATTTGCAGTCCTCATGTGGCTCC  455

Query 1913  TGACCTACGTTGGCGCTCTCTTCAATGGCCTGACCCTGCTGCTCATGGCTGTGGTTTCAATGTTTACTCTACCT  1986
            ||||||||||||||||.||||||||||||||||||||||||||.||||||||||||||.|||||||||||||||
Sbjct  456  TGACCTACGTTGGCGCGCTCTTCAATGGCCTGACCCTGCTGCTTATGGCTGTGGTTTCGATGTTTACTCTACCT  529

Query 1987  GTAGTGTATGTTAAGCACCAGGCACAGATTGACCAATATCTGGGACTTGTGAGGACTCACATAAATGCTGTTGT  2060
            ||.|||||.|||||||||||||||||..|||||||||||||||||||||||||||||||||||||..|.||.||
Sbjct  530  GTTGTGTACGTTAAGCACCAGGCACAAGTTGACCAATATCTGGGACTTGTGAGGACTCACATAAACACCGTCGT  603

Query 2061  GGCAAAGATTCAGGCTAAAATCCCAGGCGCTAAGAGGCACGCTGAG----------------------------  2106
            |||||||||.||||||||||||||.|||||.|||||||||||||||                            
Sbjct  604  GGCAAAGATCCAGGCTAAAATCCCCGGCGCCAAGAGGCACGCTGAGTAGATGGTCACCCCAGGAGAAGCCGGAC  677

Query 2107  --------------------------------------------------------------------------  2106
                                                                                      
Sbjct  678  ATGAGTGGGGGTGTCTGGAGTGGTAACAGCTCTCTCCTTCCTCGTTACTGCAAATTGATTGTTTCCCTTTCCTG  751

Query 2107  --------------------------------------------------------------------------  2106
                                                                                      
Sbjct  752  GTACCATAATCTTAGAGGCAAACTTTGAGACAGGTGTTTTGAGGCTCTTCCTGTACTCTTAGGATATATGAGCC  825

Query 2107  --------------------------------------------------------------------------  2106
                                                                                      
Sbjct  826  GCCCCCTCCCCACCCCCGTGTCAAGCACTAAAGTATAGAGTGTGTTAGATGTGGTTTTTGATTTCGTGTTGCTA  899

Query 2107  --------------------------------------------------------------------------  2106
                                                                                      
Sbjct  900  AAAAAAAAAAAAGAAAAGAAAAGAAAAAAAGTGCATGATGGTGAGAGCCCACGTTCTCCCTCCTCCCTCGATGT  973

Query 2107  --------------------------------------------------------------------------  2106
                                                                                      
Sbjct  974  CCTCCCCTCTGCAACGCTTCTGTAGCTTCTACTGTCCCTGTGGCTAGGCCTTTCTTGCCAAGTGCGCTGACACA  1047

Query 2107  --------------------------------------------------------------------------  2106
                                                                                      
Sbjct 1048  TAGTGGATCGCTTATCATGTCCTTGGGTTGCTGGATGGATTCATCTCTAATAACACTATATAGAATTGTAGGCC  1121

Query 2107  --------------------------------------------------------------------------  2106
                                                                                      
Sbjct 1122  AATGTTTTAGCATTTCCCCACACACAGAGAACATAAAAATTAATATAAAACAGTTGACCGTACATATGGTGATC  1195

Query 2107  --------------------------------------------------------------------------  2106
                                                                                      
Sbjct 1196  CATTTTGTATAACTTAGAATGATCGAATTAAAGAATAAATCCAAAATGAACGCACAGTACTTTTCTCCTATGGG  1269

Query 2107  --------------------------------------------------------------------------  2106
                                                                                      
Sbjct 1270  ATGCCTGGGCTGATTTACATGTATGGTAACTAAAGGTGCCAGCATGTTGACTTTATTACAATTTGTATTACTTC  1343

Query 2107  --------------------------------------------------------------------------  2106
                                                                                      
Sbjct 1344  CTCTGTAGTTCCTAATGGACTCAATCACAGACTCTGGATATTTGCACTTATGTACTTGATACTGAATGCATCAA  1417

Query 2107  ---------------------  2106
                                 
Sbjct 1418  TAAATGTGACTAAATGTAGAC  1438

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