Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11117
- Subject:
- NM_001291446.2
- Aligned Length:
- 2755
- Identities:
- 511
- Gaps:
- 2192
Alignment
Query 1 ATGGCGCACGAATC--CGAGAGGAGC--------------TCTCGTCTCGGGGTGCCCTGCGGGGAGCCGGCAG 58
|||.| || |||.||.||| | |..|||||| .|||||..|..|| |||
Sbjct 1 ATGTC-------TCGGCGAAAGCAGCGGAAACCCCAACAGT-TAATCTCGG-----ACTGCGAAGGTCC--CAG 59
Query 59 AGC-TCGGA----GGTGATGCTAGCGAGGAGGATCACCCCCAAGTCTGTGCCAAGTGCTGCGCACAATTCACTG 127
.|| ||.|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CGCGTCTGAGAACGGTGATGCTAGCGAGGAGGATCACCCCCAAGTCTGTGCCAAGTGCTGCGCACAATTCACTG 133
Query 128 ACCCAACTGAATTCCTCGCCCACCAGAACGCATGTTCTACTGACCCTCCTGTAATGGTGATAATTGGGGGCCAG 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 ACCCAACTGAATTCCTCGCCCACCAGAACGCATGTTCTACTGACCCTCCTGTAATGGTGATAATTGGGGGCCAG 207
Query 202 GAGAACCCCAACAACTCTTCGGCCTCCTCTGAACCCCGGCCTGAGGGTCACAATAATCCTCAGGTCATGGACAC 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 GAGAACCCCAACAACTCTTCGGCCTCCTCTGAACCCCGGCCTGAGGGTCACAATAATCCTCAGGTCATGGACAC 281
Query 276 AGAGCATAGCAACCCCCCAGATTCTGGGTCCTCCGTGCCCACGGATCCCACCTGGGGCCCAGAGAGGAGAGGAG 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 AGAGCATAGCAACCCCCCAGATTCTGGGTCCTCCGTGCCCACGGATCCCACCTGGGGCCCAGAGAGGAGAGGAG 355
Query 350 AGGAGTCTCCAGGGCATTTCCTGGTCGCTGCCACAG--------------AACCAG---------------TA- 393
||||||||.||||||||||||||||||||||||||| ||.||| ||
Sbjct 356 AGGAGTCTTCAGGGCATTTCCTGGTCGCTGCCACAGGGGCAGAAACGCCCAAGCAGGCCTTCTTCCACCTTTAC 429
Query 394 -------TGTG------GCATTCCTGT---------------------------CAAA--------TG------ 413
||.| ||| ||||.| |||| ||
Sbjct 430 CACCCACTGGGGTCACAGCA-TCCTTTCTCTGCTGGAGGGGTTGGGCGAAGCCACAAACCCACCCCTGCCCCTT 502
Query 414 -----GCCTGCCCATGAAGCCCTGGAATTCCAGCT-------CCACCTCCACTACCACT-CCAAGC-------- 466
||||..|||.|.|||.|.| || ||||| .|.||||..||..||.| ||||||
Sbjct 503 CCCCAGCCTTGCCAGGCAGCACAG--AT--CAGCTGATTGCCTCGCCTCATCTGGCATTCCCAAGCACCACGGG 572
Query 467 ----CTGGCCCCACCAGTGCTGTTTGG-----CCTAGGAACTGTGGCTGGGAAGG----TGCCTCC-------- 519
|||||..|| ||||| |.||.|| ||.|||...|| ||| |||||||
Sbjct 573 ACTACTGGCAGCA-CAGTG-TCTTGGGGCAGCCCGAGGCCTTG---------AGGCCACTGCCTCCCCAGGGCT 635
Query 520 ----------AACAATGG--------------GATCCAGGGAAG---------CCAAGGAGAAGAC-------A 553
||.||||| |.|.|.|.|||| ||..|||||||.| |
Sbjct 636 CCTGAAGCCAAAGAATGGAAGTGGTGAGCTGAGCTACGGAGAAGTGATGGGTCCCTTGGAGAAGCCTGGTGGAA 709
Query 554 GCC-------CCCCTCC----------TATTT--------CAGCCTCCTGCA--------------CCCA---- 584
|.| ||.||.| ||||| |||...|||||| ||||
Sbjct 710 GGCACAAATGCCGCTTCTGTGCCAAAGTATTTGGCAGTGACAGTGCCCTGCAGATCCACCTTCGTTCCCACACG 783
Query 585 ------AGGC------AGTGCC---------------------------------------------------- 594
|||| |||||.
Sbjct 784 GGTGAGAGGCCCTATAAGTGCAATGTCTGTGGAAACCGTTTTACCACCCGTGGCAACCTCAAAGTGCATTTCCA 857
Query 595 -------------------------------------------------------------------------- 594
Sbjct 858 CCGGCATCGTGAGAAGTACCCACATGTGCAGATGAACCCACACCCAGTACCAGAGCACCTAGACTATGTCATTA 931
Query 595 -------------------------------------------------------------------------- 594
Sbjct 932 CCAGCAGTGGCTTGCCTTATGGTATGTCCGTGCCACCAGAGAAGGCCGAGGAGGAGGCAGCCACTCCAGGTGGA 1005
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1006 GGGGTTGAGCGCAAGCCTCTGGTGGCCTCCACAACAGCACTCAGTGCCACAGAGAGCCTGACTCTGCTCTCCAC 1079
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1080 CAGTGCAGGCACAGCCACGGCTCCAGGACTCCCTGCTTTCAATAAGTTTGTGCTCATGAAAGCAGTGGAACCCA 1153
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1154 AGAATAAAGCTGATGAAAACACCCCCCCAGGGAGTGAGGGCTCAGCCATCAGTGGAGTGGCAGAAAGTAGCACG 1227
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1228 GCAACTCGCATGCAACTAAGTAAGTTGGTGACTTCACTACCAAGCTGGGCACTGCTTACCAACCACTTCAAGTC 1301
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1302 CACTGGCAGCTTCCCCTTCCCCTATGTGCTAGAGCCCTTGGGGGCCTCACCCTCTGAGACATCAAAGCTGCAGC 1375
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1376 AACTGGTAGAAAAGATTGACCGGCAAGGAGCTGTGGCGGTGACCTCAGCTGCCTCAGGAGCCCCCACCACCTCT 1449
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1450 GCCCCTGCACCTTCATCCTCAGCCTCTTCTGGACCTAACCAGTGTGTCATCTGTCTCCGAGTGCTTAGCTGTCC 1523
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1524 TCGGGCCCTACGCCTTCATTATGGCCAACATGGAGGTGAGAGGCCCTTCAAATGCAAAGTGTGTGGCAGAGCCT 1597
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1598 TCTCCACCAGGGGTAATCTGCGTGCACATTTCGTGGGCCACAAGGCCAGTCCAGCTGCCCGGGCACAGAATTCC 1671
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1672 TGCCCCATCTGCCAGAAGAAGTTCACCAATGCTGTCACTCTGCAGCAGCATGTCCGGATGCACCTGGGGGGCCA 1745
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1746 GATCCCCAACGGTGGTACTGCACTCCCTGAAGGTGGAGGAGCTGCTCAGGAGAATGGCTCCGAGCAATCTACAG 1819
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1820 TCTCCGGGGCACGGAGTTTCCCCCAGCAGCAGTCCCAGCAGCCATCACCGGAAGAGGAGTTGTCTGAGGAGGAG 1893
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1894 GAAGAGGAGGATGAGGAAGAAGAGGAAGATGTGACTGATGAAGATTCCCTGGCAGGGAGAGGCTCAGAGAGTGG 1967
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1968 AGGTGAGAAGGCAATATCAGTGAGAGGTGATTCAGAAGAGGCATCTGGGGCAGAGGAGGAGGTGGGGACAGTGG 2041
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2042 CGGCAGCAGCCACAGCTGGGAAGGAGATGGACAGTAATGAGAAAACTACTCAACAGTCTTCTTTGCCACCACCA 2115
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2116 CCACCACCTGACAGCCTGGATCAGCCTCAGCCAATGGAGCAGGGAAGCAGTGGTGTTTTAGGAGGCAAGGAAGA 2189
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2190 GGGGGGCAAACCGGAGAGAAGCTCAAGTCCGGCATCAGCACTCACCCCAGAAGGGGAAGCCACCAGCGTGACCT 2263
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2264 TGGTAGAGGAGCTGAGCCTGCAGGAGGCAATGAGAAAGGAGCCAGGAGAGAGCAGCAGCAGAAAGGCCTGCGAA 2337
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2338 GTGTGTGGCCAGGCCTTTCCCTCCCAGGCAGCTCTGGAGGAGCATCAGAAGACCCACCCCAAGGAGGGGCCGCT 2411
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2412 CTTCACTTGTGTTTTCTGCAGGCAGGGCTTTCTTGAGCGGGCTACCCTCAAGAAGCATATGCTCCTGGCACACC 2485
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2486 ACCAGAACCAGTATGTGGCATTCCTGTCAAATGGCCTGCCCATGAAGCCCTGGAATTCCAGCTCCACCTCCACT 2559
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2560 ACCACTCCAAGCCTGGCCCCACCAGTGCTGTTTGGCCTAGGAACTGTGGCTGGGAAGGTGCCTCCAACAATGGG 2633
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2634 ATCCAGGGAAGCCAAGGAGAAGACAGCCCCCCTCCTATTTCAGCCTCCTGCACCCAAGGCAGTGCCTGAGAAGC 2707
Query 595 ----------------- 594
Sbjct 2708 CCATCATAGACAAGAAG 2724
