Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11143
- Subject:
- XR_374379.3
- Aligned Length:
- 3255
- Identities:
- 149
- Gaps:
- 3091
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AATTCAAGGCAAGAATGTTGCAAACCTCAGTTCTCCATCTCAACTCTCTCAAGTGGCCAGTGCCTCACATTTAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AAGGCAAGCCCATCTAAAGAAGACTTTACCCTGAGTCAGGCTGACAAACATCTAACACAACCTGGAAGAAGAAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GAAGCAGGTATATGTGGGAAGGAAGATGAGAGGCAATGAAAACAGAAAAAAGATCCTGGCTTTTGTGCATAAGA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ACTGGAGCAAAAGAACATTTGTCAAGAAGGCCAAGGGGAGGCTGAAAAAGTACAATTATTCAATCCTTGGCTAT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTCTAAGTTACACACATTTGCTGATGAGTGCATGATGAGACCCTCAATTAAATGGGATATTTCCTGTAAAATAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GGTTTGCTGTATTTTTAACATGGACTGTCGCATTCACTAGCAGATGTTTGGAAATGGTGAGGTTTGGGATCAGT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTTGGGCACCACTATGCCTGGGTGCTGCTACCAGCATTAAGTTGGAAAGTGGAAGGGATCTTCAATATCTTGCA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AAGTGTTGGTCAATCACACTCAATAAAGTATCATTTCAACCCAAATAACCATAAACTCCCATGTACAGTTTGAA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GAAGTTTATGGAGATAGATTCTGTGTTTCAGAGTATACCCCTTTTAGCATTATGACTTGAATAAGTGCTCTAAC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CTTTGTGTAATAAGGAGGTTAATGAGTGCCCTCTGTCCAGTGTCTTAGAGATAAATGGCTTCACTCAGGTAGGT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GCTTAGAGAAGCACAGGCTCAACAAACGTTGACAAGGGTTTTGATTTTTTTCTGATATTGTTGGGTATAAGGTG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GCTTAGATTAATCTTTCATGTTGTAAAATCCTTCTCTGCTCCAAGTAGTATATGGGGGGGGGGATAAGATTTAA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AAACTAATAATTACCAAACAAAAAGTATGGCATAGTGACCCTTGCAGTGACATCAACAAGATTGAACTCACCTA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ATGTTCTTTTTCATCTCTTCTTGCATATGCAAATAGAGACTCAATCCTTTCTCCCTTTCTCCCAATCCCCACAT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AGATTCATACATATGCAGATACCCAGAGGGAACACAACTACATCTACCACACATGAGGAACTATGAAAACGATG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AAGGGTTTCTTGTCTTACTCCTACACTGATAGTGAATCTTTTTGACAGATTGACAAAGAGGAGGTGTTTTAAGA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TTGTGTGATGTTGCAAAGTCATAGTCTCAGACTTTAATGATTATTCTGTGAGAAGCCAGTCTAGAAGGCATGTT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TGATTAAACTGAATCTGCTAAAAGAGGGTAATGCCATAAAAAAATTAGAACAAAAATTGCTAACATCAGTTTGT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TTACTTTTCATTTTTAATTTGTTTTGTGAAAACAAAGTAGAGATTCTTTGTAATTATGTGTGCTTTGGTTTAAT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GACAATATTTTCAATTGATTTCCTCCATCTGTTTAAATAATTTACCCTTCCCATTTGACCAGCTCATTTGGAAG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GAAACATAAGTAAATATGCAAGTTAAGATGGAACCACACAATTTTTTATGTCGTGACTGTATACTTTTTATGAC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TATAGTTAAGAAGTAACAAAACTTTTCTTGCAGCTCATGGTGCATTCCTTGATAAACTTTTAGCACACATAACT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TTCTTGTGCTGAATTGACTACCTGTTTATAAAAGCACATACAGACATAGAGAAGCACACACACACAAACACAAA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CACACTGAACATATTCCAGCTATGGTCTTGATAGTTCTACAGGTTAGAAATGGGAAGTTTGTATTCATCTGATG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TGTTGGGTATAATAGAATGTTTATTTGTGGAAATTAGGACTTAGGAAACTGGCACCAGTGTTCACATGTTTCAG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AGAGAGAATGGAAGTAACATAATTTATTGAAATATGACGTTTTTATTTAACACCCAAGTGAAACGTGTTGCTAG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CAGGAGAGTATATAATAACTGAAGGTAAGGAGGACAGAGTTGCCTGCATCTGATACACAGTAGTTGCTTATGAA 1998
Query 1 --------------------------------------------------------------ATGCGCCTCG-C 11
|||.|..|.| .
Sbjct 1999 ATGCTAGATAGCAACGAATGACAATTGTTATTATATTTGTATTGAAAATTTTTGATGAAAAAATGAGTTTTGTG 2072
Query 12 AAG------------------CCAAAGAA----GAAGAAGAGGAAGAGGA----------AAGAAGAAGAAGAG 53
||| |.|||||| ||.||||||||.||||| ||.|.||.||||||
Sbjct 2073 AAGTACTGTAACATGTCTTTTCTAAAGAATCAGGAGGAAGAGGAGGAGGAGGAGCAGGGGAAAAGGAGGAAGAG 2146
Query 54 GAAGAGGA--------------------------------AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA 95
||.||||| ||||||| ||||||||||||||||||||||||||
Sbjct 2147 GAGGAGGAGAAGGAGGAGAAGGAAAAGGAGAAGGAGAAGGAGAAGAA-AAGAAGAAGAAGAAGAAGAAGAAGAA 2219
Query 96 GAAGAAGAAGAAGAAGAAGAAGAAGAA-AAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAAGAA----------T 158
||||||||||||||||||||||||||| |||||||||||||||||||.||||||||||||||| .
Sbjct 2220 GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGAGGAGGG 2293
Query 159 GCAGCAG------------------------------------------------------------------- 165
|.|||||
Sbjct 2294 GGAGCAGGAGGAGGGGGAGCAGGAGGAGGAGGAGAACAACAACAACAACAGCAACAACAACTACTCAAGATTGA 2367
Query 166 -------------------------------------------------------------------------- 165
Sbjct 2368 GCTCTGTTGTATGTAGTTTTACACTCTAGCTGCCTTTAGCTCCAGGAAGTGACTATGCTACCAACCCCTACCCG 2441
Query 166 -------------------------------------------------------------------------- 165
Sbjct 2442 GCTTCCCTTGAATCCTTGGATAAAAGACAGACACACAGTTGTACAATTTTAGCTTGACTTTGGACACTATTTCT 2515
Query 166 -------------------------------------------------------------------------- 165
Sbjct 2516 GGGTGCTGCTATCCCCCACCTAGAAAAGCATGTCCTTACCAATTTTCTATCTACATCTCTCCACCTGCCTAAAC 2589
Query 166 -------------------------------------------------------------------------- 165
Sbjct 2590 TTCAGCTGCTAAACTCCCCTGACCATCTTCCTGGAAGAGCAGCCTATATGGCCACTCTGTTTCAAGATCTCACT 2663
Query 166 -------------------------------------------------------------------------- 165
Sbjct 2664 TTGTTGCCTGGTTCTCTTCTCTCCAAAATATGGCAAACTTTGTCCTCCCTTGCATCTCTCTGTCCCCTCCAGGG 2737
Query 166 -------------------------------------------------------------------------- 165
Sbjct 2738 ACCCAGAAGTCCTGCTTGTCCCTTCTACCCAGCAATTGTCCCATGGCTTTCTTTACTGACAGATCAAGAACCAA 2811
Query 166 -------------------------------------------------------------------------- 165
Sbjct 2812 TTGGGGAATGGGACCTTAGCATCAGAACAACTTCCTACAAAGCTAAGTGATTTGCTGCCCAATAAGTAGATAGA 2885
Query 166 -------------------------------------------------------------------------- 165
Sbjct 2886 CATTAACCATACTCACATAGAAAATTACTACCCAAGTGACTGAAATCTACTCAACTCTGTGGTAATTTAAATAT 2959
Query 166 -------------------------------------------------------------------------- 165
Sbjct 2960 GAATCATCTAAAACAGGCTCAGGTGTTTAAACACTCATTTGCCAGTTGGTGGTGCTGTTTGGAGACTTGTAGGA 3033
Query 166 -------------------------------------------------------------------------- 165
Sbjct 3034 TGCACAATCTTGCTGGAAGAAGTACATCACTGTCTGTAGGCTTTGAGATGATATACCCTTACAGTACTTCAAAT 3107
Query 166 -------------------------------------------------------------------------- 165
Sbjct 3108 TCATTCTCTCTTCTTTGTGTTAATGATTGAGATGTGGCCTCTCAGTCATAAATCTCATTTCTTCCATTTCTTCC 3181
Query 166 ------------------------------------------------------------------------- 165
Sbjct 3182 CTTTTGTCCTTGCTGGGATGGGCTCTAATCCCTCAGGAACCGTAAGCCAAAATAAACGACTTTTTCCATAAGC 3254
