Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11214
- Subject:
- NM_001258270.1
- Aligned Length:
- 3689
- Identities:
- 397
- Gaps:
- 3253
Alignment
Query 1 ATGAAATCGTGCGCAGTGTCGCTCACTACCGCCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGG 74
||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAATCCTGCGCAGTGTCGCTCACTACCGCCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGG 74
Query 75 AAAAGCGAGCCGCGAGAGTGAAGAGGAGTCTGTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGG 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 AAAAGCGAGCCGCGAGAGTGAAGAGGAGTCTGTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGG 148
Query 149 ACAGCCGTCTCTTCGGGTTCGTGAGGCTTCATGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGG----- 217
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 ACAGCCGTCTCTTCGGGTTCGTGAGGCTTCATGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGGCTGTT 222
Query 218 ----------------------TAAAAGC--AACCAGACGCAAAG------------TCTTT---------GGT 246
||||||| | |.|.|||| ||||| |||
Sbjct 223 CGCTGCTACGAATCTTTAATCTTAAAAGCTGA-----AGGAAAAGTGGAGTCTGACTTCTTTTGCCAATTAGGT 291
Query 247 CCGCACTT------------------------------------TGC------------------TCTACCAAG 266
||||| ||| |.||| ||
Sbjct 292 ---CACTTCAACCTCTTGTTGGAAGATTATTCAAAAGCATTATCTGCATATCAGAGATATTACAGTTTAC--AG 360
Query 267 GC----------------CCCGCGTTCCT-TACCGCC----------------------CA------------- 288
|| .|.|||||..| ||..||| ||
Sbjct 361 GCTGACTACTGGAAGAATGCTGCGTTTTTATATGGCCTTGGTTTGGTCTACTTCTACTACAATGCATTTCATTG 434
Query 289 -GCCAGTA------------------TTTATTTTG------GCTCTGCTCCATGGCCAAGG------------- 324
||.|.|| |||||.||| |||.|..||.| |||||||
Sbjct 435 GGCAATTAAAGCATTTCAAGATGTCCTTTATGTTGACCCCAGCTTTTGTCGA--GCCAAGGAAATTCATTTACG 506
Query 325 ----GGTCGGA-----AAAGTG------------------------------TTTC---TTGCCT---TTG-CT 352
||.|..| |||||| |||| |.|||| ||| ||
Sbjct 507 ACTTGGGCTCATGTTCAAAGTGAACACAGACTACAAGTCTAGTTTAAAGCATTTTCAGTTAGCCTTGATTGACT 580
Query 353 G---TCCCCGTACT----------CTGGAAT---ACTTC-----GCCCCTTGCT-------CCAGA------CT 392
| |||..||||| |||.||| |.||| ||||.||..| ||||| .|
Sbjct 581 GTAATCCATGTACTTTGTCCAATGCTGAAATTCAATTTCATATTGCCCATTTGTATGAAACCCAGAGGAAGTAT 654
Query 393 CCCTTCTACTCTG---AGGA--------AAAAAAAAATCGGACGCTTTGG--GACCGGGCTAAACCGGGT--CT 451
| |.|||| |||| ||.|| ||||.| |||.| .||||| | ||
Sbjct 655 C------ATTCTGCAAAGGAGGCATATGAACAA-----------CTTTTGCAGACAG---AAAACC---TTCCT 705
Query 452 ACACCA-------CA-------TGC--CTGTTACTT-------------------------------------- 471
.|||.| || ||| |.||||..|
Sbjct 706 GCACAAGTAAAAGCAACTGTATTGCAACAGTTAGGTTGGATGCATCATAATATGGATCTAGTAGGAGACAAAGC 779
Query 472 -------------------------------------------------------------------------- 471
Sbjct 780 CACAAAGGAAAGCTATGCTATTCAGTATCTCCAAAAGTCTTTGGAGGCAGATCCTAATTCTGGCCAATCGTGGT 853
Query 472 -------------------------------------------------------------------------- 471
Sbjct 854 ATTTTCTTGGAAGGTGTTATTCAAGTATTGGGAAAGTTCAGGATGCCTTTATATCTTACAGGCAATCTATTGAT 927
Query 472 -------------------------------------------------------------------------- 471
Sbjct 928 AAATCAGAAGCAAGTGCAGATACATGGTGTTCAATAGGTGTGTTGTATCAGCAGCAAAATCAGCCTATGGATGC 1001
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1002 TTTACAGGCATATATTTGTGCTGTACAATTGGACCATGGGCATGCCGCAGCCTGGATGGACCTAGGTACTCTCT 1075
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1076 ATGAATCCTGCAATCAACCTCAAGATGCCATTAAATGCTACCTAAATGCAGCTAGAAGCAAACGTTGTAGTAAT 1149
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1150 ACCTCTACGCTTGCTGCAAGAATTAAATTTCTACAGAATGGTTCTGATAACTGGAATGGTGGCCAGAGTCTTTC 1223
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1224 ACATCATCCAGTACAGCAAGTTTATTCGTTGTGTTTGACACCACAGAAATTACAGCACTTGGAACAACTGCGAG 1297
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1298 CAAATAGAGATAATTTAAATCCAGCACAGAAGCATCAGCTGGAACAGTTAGAAAGTCAGTTTGTCTTAATGCAG 1371
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1372 CAAATGAGACACAAAGAAGTTGCTCAGGGGCTTCATAAAAGTCAGAGTTCATGTTTGTCAGGACCTAATGAAGA 1445
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1446 ACAACCTCTGTTTTCCACTGGGTCAGCCCAGTATCACCAGGCAACTAGCACTGGTATTAAGAAGGCGAATGAAC 1519
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1520 ATCTCACTCTGCCTAGTAATTCAGTACCACAGGGGGATGCTGACAGTCACCTCTCCTGTCATACTGCTACCTCA 1593
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1594 GGTGGACAACAAGGCATTATGTTTACCAAAGAGAGCAAGCCTTCAAAAAATAGATCCTTGGTGCCTGAAACAAG 1667
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1668 CAGGCATACTGGAGACACATCTAATGGCTGTGCTGATGTCAAGGGACTTTCTAATCATGTTCATCAGTTGATAG 1741
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1742 CAGATGCTGTTTCCAGTCCTAACCATGGAGATTCACCAAATTTATTAATTGCAGACAATCCTCAGCTCTCTGCT 1815
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1816 TTGTTGATTGGAAAAGCCAATGGCAATGTGGGTACTGGAACCTGTGACAAAGTGAATAATATTCACCCAGCTGT 1889
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1890 TCATACAAAGACTGATCATTCTGTTGCCTCTTCACCCTCTTCAGCCATTTCCACAGCAACACCTTCTCCTAAAT 1963
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1964 CCACTGAGCAGAGAAGCATAAACAGTGTTACCAGCCTTAACAGTCCTCACAGTGGATTACACACAGTCAATGGA 2037
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2038 GAGGGGCTGGGGAAGTCACAGAGCTCTACAAAAGTAGACCTGCCTTTAGCTAGCCACAGATCTACTTCTCAGAT 2111
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2112 CTTACCATCAATGTCAGTGTCTATATGCCCCAGTTCAACAGAAGTTCTGAAAGCATGCAGGAATCCAGGTAAAA 2185
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2186 ATGGCTTGTCTAATAGCTGCATTTTGTTAGATAAATGTCCACCTCCAAGACCACCAACTTCACCATACCCACCC 2259
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2260 TTGCCAAAGGACAAGTTGAATCCACCCACACCTAGTATTTACTTGGAAAATAAACGTGATGCTTTCTTTCCTCC 2333
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2334 ATTACATCAATTTTGTACAAATCCAAAAAACCCTGTTACAGTAATACGTGGCCTTGCTGGAGCTCTTAAATTAG 2407
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2408 ATCTTGGACTTTTCTCTACCAAAACTTTGGTAGAAGCTAACAATGAACATATGGTAGAAGTGAGGACACAGTTG 2481
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2482 CTGCAACCAGCAGATGAAAACTGGGATCCCACTGGAACAAAGAAAATCTGGCGTTGTGAAAGCAATAGATCTCA 2555
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2556 TACTACAATTGCCAAATACGCACAATACCAGGCTTCCTCCTTCCAGGAATCATTGAGAGAAGAAAATGAGAAAA 2629
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2630 GAACACAACACAAAGATCATTCAGATAACGAATCCACATCTTCAGAGAATTCTGGAAGGAGAAGGAAAGGACCT 2703
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2704 TTTAAAACCATAAAATTTGGGACCAACATTGACCTCTCTGATAACAAAAAGTGGAAGTTGCAGTTACATGAACT 2777
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2778 GACTAAACTTCCTGCTTTTGCGCGTGTGGTGTCAGCAGGAAATCTTCTAACCCATGTTGGGCATACCATTCTGG 2851
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2852 GCATGAATACAGTACAACTGTATATGAAAGTTCCAGGGAGTCGGACACCAGGTCACCAAGAAAATAACAACTTC 2925
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2926 TGCTCTGTTAACATAAATATTGGTCCAGGAGATTGTGAATGGTTTGTTGTACCTGAAGATTATTGGGGTGTTCT 2999
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3000 GAATGACTTCTGTGAAAAAAATAATTTGAATTTTTTAATGAGTTCTTGGTGGCCCAACCTTGAAGATCTTTATG 3073
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3074 AAGCAAATGTCCCTGTGTATAGATTTATTCAGCGACCTGGAGATTTGGTCTGGATAAATGCAGGCACTGTGCAT 3147
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3148 TGGGTTCAAGCTGTTGGCTGGTGCAATAACATTGCCTGGAATGTTGGTCCACTTACAGCCTGCCAGTATAAATT 3221
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3222 GGCAGTGGAACGGTATGAATGGAACAAATTGAAAAGTGTGAAGTCACCAGTACCCATGGTGCATCTTTCCTGGA 3295
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3296 ATATGGCACGAAATATCAAAGTCTCAGATCCAAAGCTTTTTGAAATGATTAAGTATTGTCTTTTGAAAATTCTG 3369
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3370 AAGCAATATCAGACATTGAGAGAAGCTCTTGTTGCAGCAGGAAAAGAGGTTATATGGCATGGGCGGACAAATGA 3443
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3444 TGAACCAGCTCATTACTGTAGCATTTGTGAGGTGGAGGTTTTTAATCTGCTTTTTGTCACTAATGAAAGCAATA 3517
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3518 CTCAAAAAACCTACATAGTACATTGCCATGATTGTGCACGAAAAACAAGCAAAAGTTTGGAAAATTTTGTGGTG 3591
Query 472 --------------------------------------------------------------- 471
Sbjct 3592 CTCGAACAGTACAAAATGGAGGACCTAATCCAAGTTTATGATCAATTTACACTAGTAAGTCAT 3654
