Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11214
- Subject:
- NR_047598.1
- Aligned Length:
- 6854
- Identities:
- 397
- Gaps:
- 6407
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCTCATCGTTTGTTGTTTAGATAATATCATGAACTGATAAATGCAGTTGCCACGTTGATTCCCTAGGGCCTGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTACCGACTGAGGTCATAAGATATTATGCCTTCTCTTTAGACTTGGTCAGTGGAGAGGAAATGGGCAAAGAACC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGCCTATGGAGGTGACAAGGCCTTAGGGCCAAAAGTCTTGAGGGTGAAGGTTTAGGGCCTGCGCAGCTTCCCTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCATGCCCCGCAAGGTCTCGCATTCGCAAGGCTTGTGACAGTGGGAGCCTCATTACGGACTCTCCTAAAGTCCA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGGTGTCCTCTTTTCGCATTTGCGCCCCGTGGGTGATGCCCGATGCCGCCCTTCCCATCGCTCTCTTCCCCTTC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAGCGTATCGCAACTGCAAAAACACCCAGCACAGACACTCCATTTTCTATCTTAATGCATTTAACTAGCACAAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTACAGGTTGTTCCATCCCAGAGACTACCCTTTTCTCCATAGACGTGACCATCAACCAACCAGCGGTCAGAATC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGTCAGCCTCTGTCATGTTCCTAGGTCCTTGGCGAACTGGCTGGGCGGGGTCCCAGCAGCCTAGGAGTACAGTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GAGCAATGCCTGACGTAAGTCAACAAAGATCACGTGAGACGAATCAGTCGCCTAGATTGGCTACAACTAAGTGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTGGGAGCGGGGAGGTCGCGGCGGCTGCGTGGGGTTCGCCCGTGACACAATTACAACTTTGTGCTGGTGCTGGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAAGTTTGTGATTTTAAGAAATTCTGCTGTGCTCTCCAGCACTGCGAGCTTCTGCCTTCCCTGTAGTTTCCCAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATGTGATCCAGGTAGCCGAGTTCCGCTGCCCGTGCTTCGGTAGCTTAAGTCTTTGCCTCAGCTTTTTTCCTTGC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGCCGCTGAGGAGGCGATAAAATTGGCGTCACAGTCTCAAGCAGCGATTGAAGGCGTCTTTTCAACTACTCGAT 962
Query 1 -------------------------------------------ATGAAATCGTGCGCAGTGTCGCTCACTACCG 31
||||||||.||||||||||||||||||||||
Sbjct 963 TAAGGTTGGGTATCGTCGTGGGACTTGGAAATTTGTTGTTTCCATGAAATCCTGCGCAGTGTCGCTCACTACCG 1036
Query 32 CCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGAGAGTGAAGAGGAGTCT 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGAGAGTGAAGAGGAGTCT 1110
Query 106 GTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCGGGTTCGTGAGGCTTCA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCGGGTTCGTGAGGCTTCA 1184
Query 180 TGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGG---------------------------TAAAAGC-- 224
|||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1185 TGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGGCTGTTCGCTGCTACGAATCTTTAATCTTAAAAGCTG 1258
Query 225 AACCAGACGCAAAG------------TCTTT---------GGTCCGCACTTTGCTCTACCAAGGCCCCGCGTT- 276
| |.|.|||| ||||| ||| ||||| ||| ||.|..|||
Sbjct 1259 A-----AGGAAAAGTGGAGTCTGACTTCTTTTGCCAATTAGGT---CACTT--------CAA--CCTCTTGTTG 1314
Query 277 ----------------CCTTACCGCC----CAGCCAG-TATT-TATTTT---GGCT----------------CT 309
|.|||.|..| ||| || |||| .|.||| |||| ||
Sbjct 1315 GAAGATTATTCAAAAGCATTATCTGCATATCAG--AGATATTACAGTTTACAGGCTGACTACTGGAAGAATGCT 1386
Query 310 GC-----TCCATGGCCAAGG---GGTC-------------------------GG-----AAAAGTGTTTC---- 341
|| |..||||||..|| |||| || .||||..||||
Sbjct 1387 GCGTTTTTATATGGCCTTGGTTTGGTCTACTTCTACTACAATGCATTTCATTGGGCAATTAAAGCATTTCAAGA 1460
Query 342 TTGCCTT--TGCTGTCCCCGTA-CTCT-----------GGAA----------TACTTCGCCCCTTGCTC----- 386
|..|||| ||.||.|||| | ||.| |||| .||||.|.|.|.||.||
Sbjct 1461 TGTCCTTTATGTTGACCCC--AGCTTTTGTCGAGCCAAGGAAATTCATTTACGACTTGGGCTCATGTTCAAAGT 1532
Query 387 -----CAGACTCC----CT-----------------------TCTACTCTGAGG-AAAAAAAAAATCGGACGCT 427
||||||.| || .|||.||..||| |.||..|.|.|...||||.
Sbjct 1533 GAACACAGACTACAAGTCTAGTTTAAAGGATTGAGTGCAGTGGCTATTCACAGGCATAATCATAGTACAACGCG 1606
Query 428 TTGGGA---CCGGGC------TAAACC-------------------------GGGTCTACACCA----CA---- 459
| ||| ||.||| |.|.|| |||.|||||.|| ||
Sbjct 1607 T--GGAATTCCTGGCCCAAAGTGATCCTTCCATCTCAGACTCCCAAGCAGTTGGGACTACAGCATTTTCAGTTA 1678
Query 460 --------TGCCTGT--------TACTT---------------------------------------------- 471
||.|||| |||||
Sbjct 1679 GCCTTGATTGACTGTAATCCATGTACTTTGTCCAATGCTGAAATTCAATTTCATATTGCCCATTTGTATGAAAC 1752
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1753 CCAGAGGAAGTATCATTCTGCAAAGGAGGCATATGAACAACTTTTGCAGACAGAAAACCTTCCTGCACAAGTAA 1826
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1827 AAGCAACTGTATTGCAACAGTTGGATGCATCATAATATGGATCTAGTAGGAGACAAAGCCACAAAGGAAAGCTA 1900
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1901 TGCTATTCAGTATCTCCAAAAGTCTTTGGAGGCAGATCCTAATTCTGGCCAATCGTGGTATTTTCTTGGAAGGT 1974
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1975 GTTATTCAAGTATTGGGAAAGTTCAGGATGCCTTTATATCTTACAGGCAATCTATTGATAAATCAGAAGCAAGT 2048
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2049 GCAGATACATGGTGTTCAATAGGTGTGTTGTATCAGCAGCAAAATCAGCCTATGGATGCTTTACAGGCATATAT 2122
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2123 TTGTGCTGTACAATTGGACCATGGGCATGCCGCAGCCTGGATGGACCTAGGTACTCTCTATGAATCCTGCAATC 2196
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2197 AACCTCAAGATGCCATTAAATGCTACCTAAATGCAGCTAGAAGCAAACGTTGTAGTAATACCTCTACGCTTGCT 2270
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2271 GCAAGAATTAAATTTCTACAGGCTCAGTTGTGTAACCTTCCACAAAGTAGTCTACAGAATAAAACTAAATTACT 2344
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2345 TCCTAGTATTGAGGAGGCATGGAGCCTACCAATCCCCGCAGAGCTTACCTCCAGGCAGGGTGCCATGAACACAG 2418
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2419 CACAGCAGAATGGTTCTGATAACTGGAATGGTGGCCAGAGTCTTTCACATCATCCAGTACAGCAAGTTTATTCG 2492
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2493 TTGTGTTTGACACCACAGAAATTACAGCACTTGGAACAACTGCGAGCAAATAGAGATAATTTAAATCCAGCACA 2566
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2567 GAAGCATCAGCTGGAACAGTTAGAAAGTCAGTTTGTCTTAATGCAGCAAATGAGACACAAAGAAGTTGCTCAGG 2640
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2641 TACGAACTACTGGAATTCATAACGGGGCCATAACTGATTCATCACTGCCTACAAACTCTGTCTCTAATCGACAA 2714
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2715 CCACATGGTGCTCTGACCAGAGTATCTAGCGTCTCTCAGCCTGGAGTTCGCCCTGCTTGTGTTGAAAAACTTTT 2788
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2789 GTCCAGTGGAGCTTTTTCTGCAGGCTGTATTCCTTGTGGCACATCAAAAATTCTAGGAAGTACAGACACTATCT 2862
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2863 TGCTAGGCAGTAATTGTATAGCAGGAAGTGAAAGTAATGGAAATGTGCCTTACCTGCAGCAAAATACACACACT 2936
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2937 CTACCTCATAATCATACAGACCTGAACAGCAGCACAGAAGAGCCATGGAGAAAACAGCTATCTAACTCCGCTCA 3010
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3011 GGGGCTTCATAAAAGTCAGAGTTCATGTTTGTCAGGACCTAATGAAGAACAACCTCTGTTTTCCACTGGGTCAG 3084
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3085 CCCAGTATCACCAGGCAACTAGCACTGGTATTAAGAAGGCGAATGAACATCTCACTCTGCCTAGTAATTCAGTA 3158
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3159 CCACAGGGGGATGCTGACAGTCACCTCTCCTGTCATACTGCTACCTCAGGTGGACAACAAGGCATTATGTTTAC 3232
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3233 CAAAGAGAGCAAGCCTTCAAAAAATAGATCCTTGGTGCCTGAAACAAGCAGGCATACTGGAGACACATCTAATG 3306
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3307 GCTGTGCTGATGTCAAGGGACTTTCTAATCATGTTCATCAGTTGATAGCAGATGCTGTTTCCAGTCCTAACCAT 3380
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3381 GGAGATTCACCAAATTTATTAATTGCAGACAATCCTCAGCTCTCTGCTTTGTTGATTGGAAAAGCCAATGGCAA 3454
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3455 TGTGGGTACTGGAACCTGTGACAAAGTGAATAATATTCACCCAGCTGTTCATACAAAGACTGATCATTCTGTTG 3528
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3529 CCTCTTCACCCTCTTCAGCCATTTCCACAGCAACACCTTCTCCTAAATCCACTGAGCAGAGAAGCATAAACAGT 3602
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3603 GTTACCAGCCTTAACAGTCCTCACAGTGGATTACACACAGTCAATGGAGAGGGGCTGGGGAAGTCACAGAGCTC 3676
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3677 TACAAAAGTAGACCTGCCTTTAGCTAGCCACAGATCTACTTCTCAGATCTTACCATCAATGTCAGTGTCTATAT 3750
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3751 GCCCCAGTTCAACAGAAGTTCTGAAAGCATGCAGGAATCCAGGTAAAAATGGCTTGTCTAATAGCTGCATTTTG 3824
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3825 TTAGATAAATGTCCACCTCCAAGACCACCAACTTCACCATACCCACCCTTGCCAAAGGACAAGTTGAATCCACC 3898
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3899 CACACCTAGTATTTACTTGGAAAATAAACGTGATGCTTTCTTTCCTCCATTACATCAATTTTGTACAAATCCAA 3972
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3973 AAAACCCTGTTACAGTAATACGTGGCCTTGCTGGAGCTCTTAAATTAGATCTTGGACTTTTCTCTACCAAAACT 4046
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4047 TTGGTAGAAGCTAACAATGAACATATGGTAGAAGTGAGGACACAGTTGCTGCAACCAGCAGATGAAAACTGGGA 4120
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4121 TCCCACTGGAACAAAGAAAATCTGGCGTTGTGAAAGCAATAGATCTCATACTACAATTGCCAAATACGCACAAT 4194
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4195 ACCAGGCTTCCTCCTTCCAGGAATCATTGAGAGAAGAAAATGAGAAAAGAACACAACACAAAGATCATTCAGAT 4268
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4269 AACGAATCCACATCTTCAGAGAATTCTGGAAGGAGAAGGAAAGGACCTTTTAAAACCATAAAATTTGGGACCAA 4342
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4343 CATTGACCTCTCTGATAACAAAAATAATCTGTGTTTGTCTTAAGACTTATTTTTGGAATAAGTTAAACGCTTTA 4416
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4417 GTTCTACTGACTATACAGGTGGAAGTTGCAGTTACATGAACTGACTAAACTTCCTGCTTTTGCGCGTGTGGTGT 4490
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4491 CAGCAGGAAATCTTCTAACCCATGTTGGGCATACCATTCTGGGCATGAATACAGTACAACTGTATATGAAAGTT 4564
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4565 CCAGGGAGTCGGACACCAGGTCACCAAGAAAATAACAACTTCTGCTCTGTTAACATAAATATTGGTCCAGGAGA 4638
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4639 TTGTGAATGGTTTGTTGTACCTGAAGATTATTGGGGTGTTCTGAATGACTTCTGTGAAAAAAATAATTTGAATT 4712
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4713 TTTTAATGAGTTCTTGGTGGCCCAACCTTGAAGATCTTTATGAAGCAAATGTCCCTGTGTATAGATTTATTCAG 4786
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4787 CGACCTGGAGATTTGGTCTGGATAAATGCAGGCACTGTGCATTGGGTTCAAGCTGTTGGCTGGTGCAATAACAT 4860
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4861 TGCCTGGAATGTTGGTCCACTTACAGCCTGCCAGTATAAATTGGCAGTGGAACGGTATGAATGGAACAAATTGA 4934
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4935 AAAGTGTGAAGTCACCAGTACCCATGGTGCATCTTTCCTGGAATATGGCACGAAATATCAAAGTCTCAGATCCA 5008
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5009 AAGCTTTTTGAAATGATTAAGTATTGTCTTTTGAAAATTCTGAAGCAATATCAGACATTGAGAGAAGCTCTTGT 5082
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5083 TGCAGCAGGAAAAGAGGTTATATGGCATGGGCGGACAAATGATGAACCAGCTCATTACTGTAGCATTTGTGAGG 5156
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5157 TGGAGGTTTTTAATCTGCTTTTTGTCACTAATGAAAGCAATACTCAAAAAACCTACATAGTACATTGCCATGAT 5230
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5231 TGTGCACGAAAAACAAGCAAAAGTTTGGAAAATTTTGTGGTGCTCGAACAGTACAAAATGGAGGACCTAATCCA 5304
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5305 AGTTTATGATCAATTTACACTAGCTCTTTCATTATCATCCTCATCTTGATATAGTTCCATGAATATTAAATGAG 5378
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5379 ATTATTTCTGCTCTTCAGGAAATTTCTGCACCACTGGTTTTGTAGCTGTTTCATAAAACTGTTGACTAAAAGCT 5452
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5453 ATGTCTATGCAACCTTCCAAGAATAGTATGTCAAGCAACTGGACACAGTGCTGCCTCTGCTTCAGGACTTAACA 5526
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5527 TGCTGATCCAGCTGTACTTCAGAAAAATAATATTAATCATATGTTTTGTGTACGTATGACAAACTGTCAAAGTG 5600
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5601 ACACAGAATACTGATTTGAAGATAGCCTTTTTTATGTTTCTCTATTTCTGGGCTGATGAATTAATATTCATTTG 5674
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5675 TATTTTAACCCTGCAGAATTTTCCTTAGTTAAAAACACTTTCCTAGCTGGTCATTTCTTCATAAGATAGCAAAT 5748
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5749 TTAAATCTCTCCTCGATCAGCTTTTAAAAAATGTGTACTATTATCTGAGGAAGTTTTTTACTGCTTTATGTTTT 5822
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5823 TGTGTGTTTTGAGGCCATGATGATTACATTTGTGGTTCCAAAATAATTTTTTTAAATATTAATAGCCCATATAC 5896
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5897 AAAGATAATGGATTGCACATAGACAAAGAAATAAACTTCAGATTTGTGATTTTTGTTTCTAAACTTGATACAGA 5970
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5971 TTTACACTATTTATAAATACGTATTTATTGCCTGAAAATATTTGTGAATGGAATGTTGTTTTTTTCCAGACGTA 6044
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6045 ACTGCCATTAAATACTAAGGAGTTCTGTAGTTTTAAACACTACTCCTATTACATTTTATATGTGTAGATAAAAC 6118
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6119 TGCTTAGTATTATACAGAAATTTTTATTAAAATTGTTAAATGTTTAAAGGGTTTCCCAATGTTTGAGTTTAAAA 6192
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6193 AAGACTTTCTGAAAAAATCCACTTTTTGTTCATTTTCAAACCTAATGATTATATGTATTTTATATGTGTGTGTA 6266
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6267 TGTGTACACACATGTATAATATATACAGAAACCTCGATATATAATTGTATAGATTTTAAAAGTTTTATTTTTTA 6340
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6341 CATCTATGGTAGTTTTTGAGGTGCCTATTATAAAGTATTACGGAAGTTTGCTGTTTTTAAAGTAAATGTCTTTT 6414
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6415 AGTGTGATTTATTAAGTTGTAGTCACCATAGTGATAGCCCATAAATAATTGCTGGAAAATTGTATTTTATAACA 6488
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6489 GTAGAAAACATATAGTCAGTGAAGTAAATATTTTAAAGGAAACATTATATAGATTTGATAAATGTTGTTTATAA 6562
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6563 TTAAGAGTTTCTTATGGAAAAGAGATTCAGAATGATAACCTCTTTTAGAGAACAAATAAGTGACTTATTTTTTT 6636
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6637 AAAGCTAGATGACTTTGAAATGCTATACTGTCCTGCTTGTACAACATGGTTTGGGGTGAAGGGGAGGAAAGTAT 6710
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6711 TAAAAAATCTATATCGCTAGTAAATTGTAATAAGTTCTATTAAAACTTGTATTTCATATGAAAAATTTGCTAAT 6784
Query 472 ---------------------------------------------- 471
Sbjct 6785 TTAATATTAACTCATTTGATAATAATACTTGTCTTTTCTACCTCTC 6830
