Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11214
- Subject:
- NR_047613.1
- Aligned Length:
- 5845
- Identities:
- 393
- Gaps:
- 5413
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCTCATCGTTTGTTGTTTAGATAATATCATGAACTGATAAATGCAGTTGCCACGTTGATTCCCTAGGGCCTGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTACCGACTGAGGTCATAAGATATTATGCCTTCTCTTTAGACTTGGTCAGTGGAGAGGAAATGGGCAAAGAACC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGCCTATGGAGGTGACAAGGCCTTAGGGCCAAAAGTCTTGAGGGTGAAGGTTTAGGGCCTGCGCAGCTTCCCTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCATGCCCCGCAAGGTCTCGCATTCGCAAGGCTTGTGACAGTGGGAGCCTCATTACGGACTCTCCTAAAGTCCA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGGTGTCCTCTTTTCGCATTTGCGCCCCGTGGGTGATGCCCGATGCCGCCCTTCCCATCGCTCTCTTCCCCTTC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAGCGTATCGCAACTGCAAAAACACCCAGCACAGACACTCCATTTTCTATCTTAATGCATTTAACTAGCACAAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTACAGGTTGTTCCATCCCAGAGACTACCCTTTTCTCCATAGACGTGACCATCAACCAACCAGCGGTCAGAATC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGTCAGCCTCTGTCATGTTCCTAGGTCCTTGGCGAACTGGCTGGGCGGGGTCCCAGCAGCCTAGGAGTACAGTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GAGCAATGCCTGACGTAAGTCAACAAAGATCACGTGAGACGAATCAGTCGCCTAGATTGGCTACAACTAAGTGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTGGGAGCGGGGAGGTCGCGGCGGCTGCGTGGGGTTCGCCCGTGACACAATTACAACTTTGTGCTGGTGCTGGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAAGTTTGTGATTTTAAGAAATTCTGCTGTGCTCTCCAGCACTGCGAGCTTCTGCCTTCCCTGTAGTTTCCCAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATGTGATCCAGGTAGCCGAGTTCCGCTGCCCGTGCTTCGGTAGCTTAAGTCTTTGCCTCAGCTTTTTTCCTTGC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGCCGCTGAGGAGGCGATAAAATTGGCGTCACAGTCTCAAGCAGCGATTGAAGGCGTCTTTTCAACTACTCGAT 962
Query 1 -------------------------------------------ATGAAATCGTGCGCAGTGTCGCTCACTACCG 31
||||||||.||||||||||||||||||||||
Sbjct 963 TAAGGTTGGGTATCGTCGTGGGACTTGGAAATTTGTTGTTTCCATGAAATCCTGCGCAGTGTCGCTCACTACCG 1036
Query 32 CCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGAGAGTGAAGAGGAGTCT 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGAGAGTGAAGAGGAGTCT 1110
Query 106 GTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCGGGTTCGTGAGGCTTCA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCGGGTTCGTGAGGCTTCA 1184
Query 180 TGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGG---------------------------TAAAAGC-- 224
|||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1185 TGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGGCTGTTCGCTGCTACGAATCTTTAATCTTAAAAGCTG 1258
Query 225 AACCAGACGCAAAG------------TCTTT---------GGTCCGCACTTTGCTCTACC-------------- 263
| |.|.|||| ||||| ||| |||| ||.|||
Sbjct 1259 A-----AGGAAAAGTGGAGTCTGACTTCTTTTGCCAATTAGGT---CACT----TCAACCTCTTGTTGGAAGAT 1320
Query 264 ----------AAGGCCCCGCGTTCCT-TACCGCC----------------------CA--------------GC 290
||.| |.|||||..| ||..||| || ||
Sbjct 1321 TATTCAAAAGAATG--CTGCGTTTTTATATGGCCTTGGTTTGGTCTACTTCTACTACAATGCATTTCATTGGGC 1392
Query 291 CAGTA------------------TTTATTTTG------GCTCTGCTCCATGGCCAAGG---------------- 324
.|.|| |||||.||| |||.|..||.| |||||||
Sbjct 1393 AATTAAAGCATTTCAAGATGTCCTTTATGTTGACCCCAGCTTTTGTCGA--GCCAAGGAAATTCATTTACGACT 1464
Query 325 -GGTCGGA-----AAAGTG------------------------------TTTC---TTGCCT---TTG-CTG-- 353
||.|..| |||||| |||| |.|||| ||| |||
Sbjct 1465 TGGGCTCATGTTCAAAGTGAACACAGACTACAAGTCTAGTTTAAAGCATTTTCAGTTAGCCTTGATTGACTGTA 1538
Query 354 -TCCCCGTACT----------CTGGAAT---ACTTC-----GCCCCTTGCT-------CCAGA------CTCCC 395
|||..||||| |||.||| |.||| ||||.||..| ||||| .||
Sbjct 1539 ATCCATGTACTTTGTCCAATGCTGAAATTCAATTTCATATTGCCCATTTGTATGAAACCCAGAGGAAGTATC-- 1610
Query 396 TTCTACTCTG---AGGA--------AAAAAAAAATCGGACGCTTTGG--GACCGGGCTAAACCGGGT--CTACA 454
|.|||| |||| ||.|| ||||.| |||.| .||||| | ||.||
Sbjct 1611 ----ATTCTGCAAAGGAGGCATATGAACAA-----------CTTTTGCAGACAG---AAAACC---TTCCTGCA 1663
Query 455 CCA-------CA-------TGC--CTGTTACTT----------------------------------------- 471
|.| || ||| |.||||..|
Sbjct 1664 CAAGTAAAAGCAACTGTATTGCAACAGTTAGGTTGGATGCATCATAATATGGATCTAGTAGGAGACAAAGCCAC 1737
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1738 AAAGGAAAGCTATGCTATTCAGTATCTCCAAAAGTCTTTGGAGGCAGATCCTAATTCTGGCCAATCGTGGTATT 1811
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1812 TTCTTGGAAGGTGTTATTCAAGTATTGGGAAAGTTCAGGATGCCTTTATATCTTACAGGCAATCTATTGATAAA 1885
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1886 TCAGAAGCAAGTGCAGATACATGGTGTTCAATAGGTGTGTTGTATCAGCAGCAAAATCAGCCTATGGATGCTTT 1959
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1960 ACAGGCATATATTTGTGCTGTACAATTGGACCATGGGCATGCCGCAGCCTGGATGGACCTAGGTACTCTCTATG 2033
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2034 AATCCTGCAATCAACCTCAAGATGCCATTAAATGCTACCTAAATGCAGCTAGAAGCAAACGTTGTAGTAATACC 2107
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2108 TCTACGCTTGCTGCAAGAATTAAATTTCTACAGGCTCAGTTGTGTAACCTTCCACAAAGTAGTCTACAGAATAA 2181
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2182 AACTAAATTACTTCCTAGTATTGAGGAGGCATGGAGCCTACCAATCCCCGCAGAGCTTACCTCCAGGCAGGGTG 2255
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2256 CCATGAACACAGCACAGCAGGCTTATAGAGCTCATGATCCAAATACTGAACATGTATTAAACCACAGTCAAACA 2329
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2330 CCAATTTTACAGCAATCCTTGTCACTACACATGATTACTTCTAGCCAAGTAGAAGGCCTGTCCAGTCCTGCCAA 2403
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2404 GAAGAAAAGAACATCTAGTCCAACAAAGAATGGTTCTGATAACTGGAATGGTGGCCAGAGTCTTTCACATCATC 2477
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2478 CAGTACAGCAAGTTTATTCGTTGTGTTTGACACCACAGAAATTACAGCACTTGGAACAACTGCGAGCAAATAGA 2551
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2552 GATAATTTAAATCCAGCACAGAAGCATCAGCTGGAACAGTTAGAAAGTCAGTTTGTCTTAATGCAGCAAATGAG 2625
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2626 ACACAAAGAAGTTGCTCAGGTACGAACTACTGGAATTCATAACGGGGCCATAACTGATTCATCACTGCCTACAA 2699
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2700 ACTCTGTCTCTAATCGACAACCACATGGTGCTCTGACCAGAGTATCTAGCGTCTCTCAGCCTGGAGTTCGCCCT 2773
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2774 GCTTGTGTTGAAAAACTTTTGTCCAGTGGAGCTTTTTCTGCAGGCTGTATTCCTTGTGGCACATCAAAAATTCT 2847
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2848 AGGAAGTACAGACACTATCTTGCTAGGCAGTAATTGTATAGCAGGAAGTGAAAGTAATGGAAATGTGCCTTACC 2921
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2922 TGCAGCAAAATACACACACTCTACCTCATAATCATACAGACCTGAACAGCAGCACAGAAGAGCCATGGAGAAAA 2995
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2996 CAGCTATCTAACTCCGCTCAGGAATCCAGGTAAAAATGGCTTGTCTAATAGCTGCATTTTGTTAGATAAATGTC 3069
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3070 CACCTCCAAGACCACCAACTTCACCATACCCACCCTTGCCAAAGGACAAGTTGAATCCACCCACACCTAGTATT 3143
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3144 TACTTGGAAAATAAACGTGATGCTTTCTTTCCTCCATTACATCAATTTTGTACAAATCCAAAAAACCCTGTTAC 3217
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3218 AGTAATACGTGGCCTTGCTGGAGCTCTTAAATTAGATCTTGGACTTTTCTCTACCAAAACTTTGGTAGAAGCTA 3291
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3292 ACAATGAACATATGGTAGAAGTGAGGACACAGTTGCTGCAACCAGCAGATGAAAACTGGGATCCCACTGGAACA 3365
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3366 AAGAAAATCTGGCGTTGTGAAAGCAATAGATCTCATACTACAATTGCCAAATACGCACAATACCAGGCTTCCTC 3439
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3440 CTTCCAGGAATCATTGAGAGAAGAAAATGAGAAAAGAACACAACACAAAGATCATTCAGATAACGAATCCACAT 3513
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3514 CTTCAGAGAATTCTGGAAGGAGAAGGAAAGGACCTTTTAAAACCATAAAATTTGGGACCAACATTGACCTCTCT 3587
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3588 GATAACAAAAAGTGGAAGTTGCAGTTACATGAACTGACTAAACTTCCTGCTTTTGCGCGTGTGGTGTCAGCAGG 3661
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3662 AAATCTTCTAACCCATGTTGGGCATACCATTCTGGGCATGAATACAGTACAACTGTATATGAAAGTTCCAGGGA 3735
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3736 GTCGGACACCAGGTCACCAAGAAAATAACAACTTCTGCTCTGTTAACATAAATATTGGTCCAGGAGATTGTGAA 3809
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3810 TGGTTTGTTGTACCTGAAGATTATTGGGGTGTTCTGAATGACTTCTGTGAAAACCTGCCAGTATAAATTGGCAG 3883
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3884 TGGAACGGTATGAATGGAACAAATTGAAAAGTGTGAAGTCACCAGTACCCATGGTGCATCTTTCCTGGAATATG 3957
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3958 GCACGAAATATCAAAGTCTCAGATCCAAAGCTTTTTGAAATGATTAAGTATTGTCTTTTGAAAATTCTGAAGCA 4031
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4032 ATATCAGACATTGAGAGAAGCTCTTGTTGCAGCAGGAAAAGAGGTTATATGGCATGGGCGGACAAATGATGAAC 4105
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4106 CAGCTCATTACTGTAGCATTTGTGAGGTGGAGGTTTTTAATCTGCTTTTTGTCACTAATGAAAGCAATACTCAA 4179
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4180 AAAACCTACATAGTACATTGCCATGATTGTGCACGAAAAACAAGCAAAAGTTTGGAAAATTTTGTGGTGCTCGA 4253
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4254 ACAGTACAAAATGGAGGACCTAATCCAAGTTTATGATCAATTTACACTAGCTCTTTCATTATCATCCTCATCTT 4327
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4328 GATATAGTTCCATGAATATTAAATGAGATTATTTCTGCTCTTCAGGAAATTTCTGCACCACTGGTTTTGTAGCT 4401
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4402 GTTTCATAAAACTGTTGACTAAAAGCTATGTCTATGCAACCTTCCAAGAATAGTATGTCAAGCAACTGGACACA 4475
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4476 GTGCTGCCTCTGCTTCAGGACTTAACATGCTGATCCAGCTGTACTTCAGAAAAATAATATTAATCATATGTTTT 4549
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4550 GTGTACGTATGACAAACTGTCAAAGTGACACAGAATACTGATTTGAAGATAGCCTTTTTTATGTTTCTCTATTT 4623
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4624 CTGGGCTGATGAATTAATATTCATTTGTATTTTAACCCTGCAGAATTTTCCTTAGTTAAAAACACTTTCCTAGC 4697
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4698 TGGTCATTTCTTCATAAGATAGCAAATTTAAATCTCTCCTCGATCAGCTTTTAAAAAATGTGTACTATTATCTG 4771
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4772 AGGAAGTTTTTTACTGCTTTATGTTTTTGTGTGTTTTGAGGCCATGATGATTACATTTGTGGTTCCAAAATAAT 4845
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4846 TTTTTTAAATATTAATAGCCCATATACAAAGATAATGGATTGCACATAGACAAAGAAATAAACTTCAGATTTGT 4919
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4920 GATTTTTGTTTCTAAACTTGATACAGATTTACACTATTTATAAATACGTATTTATTGCCTGAAAATATTTGTGA 4993
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4994 ATGGAATGTTGTTTTTTTCCAGACGTAACTGCCATTAAATACTAAGGAGTTCTGTAGTTTTAAACACTACTCCT 5067
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5068 ATTACATTTTATATGTGTAGATAAAACTGCTTAGTATTATACAGAAATTTTTATTAAAATTGTTAAATGTTTAA 5141
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5142 AGGGTTTCCCAATGTTTGAGTTTAAAAAAGACTTTCTGAAAAAATCCACTTTTTGTTCATTTTCAAACCTAATG 5215
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5216 ATTATATGTATTTTATATGTGTGTGTATGTGTACACACATGTATAATATATACAGAAACCTCGATATATAATTG 5289
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5290 TATAGATTTTAAAAGTTTTATTTTTTACATCTATGGTAGTTTTTGAGGTGCCTATTATAAAGTATTACGGAAGT 5363
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5364 TTGCTGTTTTTAAAGTAAATGTCTTTTAGTGTGATTTATTAAGTTGTAGTCACCATAGTGATAGCCCATAAATA 5437
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5438 ATTGCTGGAAAATTGTATTTTATAACAGTAGAAAACATATAGTCAGTGAAGTAAATATTTTAAAGGAAACATTA 5511
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5512 TATAGATTTGATAAATGTTGTTTATAATTAAGAGTTTCTTATGGAAAAGAGATTCAGAATGATAACCTCTTTTA 5585
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5586 GAGAACAAATAAGTGACTTATTTTTTTAAAGCTAGATGACTTTGAAATGCTATACTGTCCTGCTTGTACAACAT 5659
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5660 GGTTTGGGGTGAAGGGGAGGAAAGTATTAAAAAATCTATATCGCTAGTAAATTGTAATAAGTTCTATTAAAACT 5733
Query 472 ------------------------------------------------------------------------- 471
Sbjct 5734 TGTATTTCATATGAAAAATTTGCTAATTTAATATTAACTCATTTGATAATAATACTTGTCTTTTCTACCTCTC 5806
