Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11214
- Subject:
- NR_047616.1
- Aligned Length:
- 5834
- Identities:
- 398
- Gaps:
- 5392
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCTCATCGTTTGTTGTTTAGATAATATCATGAACTGATAAATGCAGTTGCCACGTTGATTCCCTAGGGCCTGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTACCGACTGAGGTCATAAGATATTATGCCTTCTCTTTAGACTTGGTCAGTGGAGAGGAAATGGGCAAAGAACC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGCCTATGGAGGTGACAAGGCCTTAGGGCCAAAAGTCTTGAGGGTGAAGGTTTAGGGCCTGCGCAGCTTCCCTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCATGCCCCGCAAGGTCTCGCATTCGCAAGGCTTGTGACAGTGGGAGCCTCATTACGGACTCTCCTAAAGTCCA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGGTGTCCTCTTTTCGCATTTGCGCCCCGTGGGTGATGCCCGATGCCGCCCTTCCCATCGCTCTCTTCCCCTTC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAGCGTATCGCAACTGCAAAAACACCCAGCACAGACACTCCATTTTCTATCTTAATGCATTTAACTAGCACAAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTACAGGTTGTTCCATCCCAGAGACTACCCTTTTCTCCATAGACGTGACCATCAACCAACCAGCGGTCAGAATC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGTCAGCCTCTGTCATGTTCCTAGGTCCTTGGCGAACTGGCTGGGCGGGGTCCCAGCAGCCTAGGAGTACAGTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GAGCAATGCCTGACGTAAGTCAACAAAGATCACGTGAGACGAATCAGTCGCCTAGATTGGCTACAACTAAGTGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTGGGAGCGGGGAGGTCGCGGCGGCTGCGTGGGGTTCGCCCGTGACACAATTACAACTTTGTGCTGGTGCTGGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAAGTTTGTGATTTTAAGAAATTCTGCTGTGCTCTCCAGCACTGCGAGCTTCTGCCTTCCCTGTAGTTTCCCAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATGTGATCCAGGTAGCCGAGTTCCGCTGCCCGTGCTTCGGTAGCTTAAGTCTTTGCCTCAGCTTTTTTCCTTGC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGCCGCTGAGGAGGCGATAAAATTGGCGTCACAGTCTCAAGCAGCGATTGAAGGCGTCTTTTCAACTACTCGAT 962
Query 1 -------------------------------------------ATGAAATCGTGCGCAGTGTCGCTCACTACCG 31
||||||||.||||||||||||||||||||||
Sbjct 963 TAAGGTTGGGTATCGTCGTGGGACTTGGAAATTTGTTGTTTCCATGAAATCCTGCGCAGTGTCGCTCACTACCG 1036
Query 32 CCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGAGAGTGAAGAGGAGTCT 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGAGAGTGAAGAGGAGTCT 1110
Query 106 GTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCGGGTTCGTGAGGCTTCA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCGGGTTCGTGAGGCTTCA 1184
Query 180 TGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGG---------------------------TAAAAGC-- 224
|||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1185 TGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGGCTGTTCGCTGCTACGAATCTTTAATCTTAAAAGCTG 1258
Query 225 AACCAGACGCAAAG------------TCTTT---------GGTCCGCACTTTGCTCTACCAAGGCCCCGCGTT- 276
| |.|.|||| ||||| ||| ||||| ||| ||.|..|||
Sbjct 1259 A-----AGGAAAAGTGGAGTCTGACTTCTTTTGCCAATTAGGT---CACTT--------CAA--CCTCTTGTTG 1314
Query 277 ----------------CCTTACCGCC----CAGCCAG-TATT-TATTTT---GGCT----------------CT 309
|.|||.|..| ||| || |||| .|.||| |||| ||
Sbjct 1315 GAAGATTATTCAAAAGCATTATCTGCATATCAG--AGATATTACAGTTTACAGGCTGACTACTGGAAGAATGCT 1386
Query 310 GC-----TCCATGGCCAAGG---GGTC-------------------------GG-----AAAAGTGTTTC---- 341
|| |..||||||..|| |||| || .||||..||||
Sbjct 1387 GCGTTTTTATATGGCCTTGGTTTGGTCTACTTCTACTACAATGCATTTCATTGGGCAATTAAAGCATTTCAAGA 1460
Query 342 TTGCCTT--TGCTGTCCCCGTA-CTCT-----------GGAA----------TACTTCGCCCCTTGCTC----- 386
|..|||| ||.||.|||| | ||.| |||| .||||.|.|.|.||.||
Sbjct 1461 TGTCCTTTATGTTGACCCC--AGCTTTTGTCGAGCCAAGGAAATTCATTTACGACTTGGGCTCATGTTCAAAGT 1532
Query 387 -----CAGACT-CCCTTCTACT----------------------CTG-----------------AGGAA----A 411
|||||| |...||||.| ||| ||||| |
Sbjct 1533 GAACACAGACTACAAGTCTAGTTTAAAGGAGTGTACAATATGGGCTGCCGTGAGATGTAACCAAAGGAACAGTA 1606
Query 412 AA-------AAAAAT---------------CGGAC--------GCTTTGGGACCGGGCTAAACCG-GGTCTACA 454
|| |.|||| .|||| ||..||||| .|| |||..| || |.|
Sbjct 1607 AATTTATAGAGAAATGACAAGACAAAGGGAAGGACTTGAAGTTGCCATGGGA---AGC-AAATTGTGG---AAA 1673
Query 455 CCA----CA------------TGCCTGT--------TACTT--------------------------------- 471
.|| || ||.|||| |||||
Sbjct 1674 GCATTTTCAGTTAGCCTTGATTGACTGTAATCCATGTACTTTGTCCAATGCTGAAATTCAATTTCATATTGCCC 1747
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1748 ATTTGTATGAAACCCAGAGGAAGTATCATTCTGCAAAGGAGGCATATGAACAACTTTTGCAGACAGAAAACCTT 1821
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1822 CCTGCACAAGTAAAAGCAACTGTATTGCAACAGTTAGGTTGGATGCATCATAATATGGATCTAGTAGGAGACAA 1895
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1896 AGCCACAAAGGAAAGCTATGCTATTCAGTATCTCCAAAAGTCTTTGGAGGCAGATCCTAATTCTGGCCAATCGT 1969
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1970 GGTATTTTCTTGGAAGGTGTTATTCAAGTATTGGGAAAGTTCAGGATGCCTTTATATCTTACAGGCAATCTATT 2043
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2044 GATAAATCAGAAGCAAGTGCAGATACATGGTGTTCAATAGGTGTGTTGTATCAGCAGCAAAATCAGCCTATGGA 2117
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2118 TGCTTTACAGGCATATATTTGTGCTGTACAATTGGACCATGGGCATGCCGCAGCCTGGATGGACCTAGGTACTC 2191
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2192 TCTATGAATCCTGCAATCAACCTCAAGATGCCATTAAATGCTACCTAAATGCAGCTAGAAGCAAACGTTGTAGT 2265
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2266 AATACCTCTACGCTTGCTGCAAGAATTAAATTTCTACAGAATGGTTCTGATAACTGGAATGGTGGCCAGAGTCT 2339
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2340 TTCACATCATCCAGTACAGCAAGTTTATTCGTTGTGTTTGACACCACAGAAATTACAGCACTTGGAACAACTGC 2413
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2414 GAGCAAATAGAGATAATTTAAATCCAGCACAGAAGCATCAGCTGGAACAGTTAGAAAGTCAGTTTGTCTTAATG 2487
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2488 CAGCAAATGAGACACAAAGAAGTTGCTCAGGTACGAACTACTGGAATTCATAACGGGGCCATAACTGATTCATC 2561
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2562 ACTGCCTACAAACTCTGTCTCTAATCGACAACCACATGGTGCTCTGACCAGAGTATCTAGCGTCTCTCAGCCTG 2635
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2636 GAGTTCGCCCTGCTTGTGTTGAAAAACTTTTGTCCAGTGGAGCTTTTTCTGCAGGCTGTATTCCTTGTGGCACA 2709
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2710 TCAAAAATTCTAGGAAGTACAGACACTATCTTGCTAGGCAGTAATTGTATAGCAGGAAGTGAAAGTAATGGAAA 2783
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2784 TGTGCCTTACCTGCAGCAAAATACACACACTCTACCTCATAATCATACAGACCTGAACAGCAGCACAGAAGAGC 2857
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2858 CATGGAGAAAACAGCTATCTAACTCCGCTCAGGAATCCAGGTAAAAATGGCTTGTCTAATAGCTGCATTTTGTT 2931
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2932 AGATAAATGTCCACCTCCAAGACCACCAACTTCACCATACCCACCCTTGCCAAAGGACAAGTTGAATCCACCCA 3005
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3006 CACCTAGTATTTACTTGGAAAATAAACGTGATGCTTTCTTTCCTCCATTACATCAATTTTGTACAAATCCAAAA 3079
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3080 AACCCTGTTACAGTAATACGTGGCCTTGCTGGAGCTCTTAAATTAGATCTTGGACTTTTCTCTACCAAAACTTT 3153
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3154 GGTAGAAGCTAACAATGAACATATGGTAGAAGTGAGGACACAGTTGCTGCAACCAGCAGATGAAAACTGGGATC 3227
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3228 CCACTGGAACAAAGAAAATCTGGCGTTGTGAAAGCAATAGATCTCATACTACAATTGCCAAATACGCACAATAC 3301
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3302 CAGGCTTCCTCCTTCCAGGAATCATTGAGAGAAGAAAATGAGAAAAGAACACAACACAAAGATCATTCAGATAA 3375
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3376 CGAATCCACATCTTCAGAGAATTCTGGAAGGAGAAGGAAAGGACCTTTTAAAACCATAAAATTTGGGACCAACA 3449
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3450 TTGACCTCTCTGATAACAAAAAGAAATCTTCTAACCCATGTTGGGCATACCATTCTGGGCATGAATACAGTACA 3523
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3524 ACTGTATATGAAAGTTCCAGGGAGTCGGACACCAGGTCACCAAGAAAATAACAACTTCTGCTCTGTTAACATAA 3597
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3598 ATATTGGTCCAGGAGATTGTGAATGGTTTGTTGTACCTGAAGATTATTGGGGTGTTCTGAATGACTTCTGTGAA 3671
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3672 AAAAATAATTTGAATTTTTTAATGAGTTCTTGGTGGCCCAACCTTGAAGATCTTTATGAAGCAAATGTCCCTGT 3745
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3746 GTATAGATTTATTCAGCGACCTGGAGATTTGGTCTGGATAAATGCAGGCACTGTGCATTGGGTTCAAGCTGTTG 3819
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3820 GCTGGTGCAATAACATTGCCTGGAATGTTGGTCCACTTACAGCCTGCCAGTATAAATTGGCAGTGGAACGGTAT 3893
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3894 GAATGGAACAAATTGAAAAGTGTGAAGTCACCAGTACCCATGGTGCATCTTTCCTGGAATATGGCACGAAATAT 3967
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3968 CAAAGTCTCAGATCCAAAGCTTTTTGAAATGATTAAGTATTGTCTTTTGAAAATTCTGAAGCAATATCAGACAT 4041
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4042 TGAGAGAAGCTCTTGTTGCAGCAGGAAAAGAGGTTATATGGCATGGGCGGACAAATGATGAACCAGCTCATTAC 4115
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4116 TGTAGCATTTGTGAGGTGGAGGTTTTTAATCTGCTTTTTGTCACTAATGAAAGCAATACTCAAAAAACCTACAT 4189
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4190 AGTACATTGCCATGATTGTGCACGAAAAACAAGCAAAAGTTTGGAAAATTTTGTGGTGCTCGAACAGTACAAAA 4263
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4264 TGGAGGACCTAATCCAAGTTTATGATCAATTTACACTAGCTCTTTCATTATCATCCTCATCTTGATATAGTTCC 4337
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4338 ATGAATATTAAATGAGATTATTTCTGCTCTTCAGGAAATTTCTGCACCACTGGTTTTGTAGCTGTTTCATAAAA 4411
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4412 CTGTTGACTAAAAGCTATGTCTATGCAACCTTCCAAGAATAGTATGTCAAGCAACTGGACACAGTGCTGCCTCT 4485
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4486 GCTTCAGGACTTAACATGCTGATCCAGCTGTACTTCAGAAAAATAATATTAATCATATGTTTTGTGTACGTATG 4559
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4560 ACAAACTGTCAAAGTGACACAGAATACTGATTTGAAGATAGCCTTTTTTATGTTTCTCTATTTCTGGGCTGATG 4633
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4634 AATTAATATTCATTTGTATTTTAACCCTGCAGAATTTTCCTTAGTTAAAAACACTTTCCTAGCTGGTCATTTCT 4707
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4708 TCATAAGATAGCAAATTTAAATCTCTCCTCGATCAGCTTTTAAAAAATGTGTACTATTATCTGAGGAAGTTTTT 4781
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4782 TACTGCTTTATGTTTTTGTGTGTTTTGAGGCCATGATGATTACATTTGTGGTTCCAAAATAATTTTTTTAAATA 4855
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4856 TTAATAGCCCATATACAAAGATAATGGATTGCACATAGACAAAGAAATAAACTTCAGATTTGTGATTTTTGTTT 4929
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4930 CTAAACTTGATACAGATTTACACTATTTATAAATACGTATTTATTGCCTGAAAATATTTGTGAATGGAATGTTG 5003
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5004 TTTTTTTCCAGACGTAACTGCCATTAAATACTAAGGAGTTCTGTAGTTTTAAACACTACTCCTATTACATTTTA 5077
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5078 TATGTGTAGATAAAACTGCTTAGTATTATACAGAAATTTTTATTAAAATTGTTAAATGTTTAAAGGGTTTCCCA 5151
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5152 ATGTTTGAGTTTAAAAAAGACTTTCTGAAAAAATCCACTTTTTGTTCATTTTCAAACCTAATGATTATATGTAT 5225
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5226 TTTATATGTGTGTGTATGTGTACACACATGTATAATATATACAGAAACCTCGATATATAATTGTATAGATTTTA 5299
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5300 AAAGTTTTATTTTTTACATCTATGGTAGTTTTTGAGGTGCCTATTATAAAGTATTACGGAAGTTTGCTGTTTTT 5373
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5374 AAAGTAAATGTCTTTTAGTGTGATTTATTAAGTTGTAGTCACCATAGTGATAGCCCATAAATAATTGCTGGAAA 5447
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5448 ATTGTATTTTATAACAGTAGAAAACATATAGTCAGTGAAGTAAATATTTTAAAGGAAACATTATATAGATTTGA 5521
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5522 TAAATGTTGTTTATAATTAAGAGTTTCTTATGGAAAAGAGATTCAGAATGATAACCTCTTTTAGAGAACAAATA 5595
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5596 AGTGACTTATTTTTTTAAAGCTAGATGACTTTGAAATGCTATACTGTCCTGCTTGTACAACATGGTTTGGGGTG 5669
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5670 AAGGGGAGGAAAGTATTAAAAAATCTATATCGCTAGTAAATTGTAATAAGTTCTATTAAAACTTGTATTTCATA 5743
Query 472 -------------------------------------------------------------- 471
Sbjct 5744 TGAAAAATTTGCTAATTTAATATTAACTCATTTGATAATAATACTTGTCTTTTCTACCTCTC 5805
