Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11214
- Subject:
- XM_011531446.3
- Aligned Length:
- 4673
- Identities:
- 397
- Gaps:
- 4237
Alignment
Query 1 ATGAAATCGTGCGCAGTGTCGCTCACTACCGCCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGG 74
||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAATCCTGCGCAGTGTCGCTCACTACCGCCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGG 74
Query 75 AAAAGCGAGCCGCGAGAGTGAAGAGGAGTCTGTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGG 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 AAAAGCGAGCCGCGAGAGTGAAGAGGAGTCTGTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGG 148
Query 149 ACAGCCGTCTCTTCGGGTTCGTGAGGCTTCATGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGG----- 217
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 ACAGCCGTCTCTTCGGGTTCGTGAGGCTTCATGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGGCTGTT 222
Query 218 ----------------------TAAAAGC--AACCAGACGCAAAG------------TCTTT---------GGT 246
||||||| | |.|.|||| ||||| |||
Sbjct 223 CGCTGCTACGAATCTTTAATCTTAAAAGCTGA-----AGGAAAAGTGGAGTCTGACTTCTTTTGCCAATTAGGT 291
Query 247 CCGCACTT------------------------------------TGC------------------TCTACCAAG 266
||||| ||| |.||| ||
Sbjct 292 ---CACTTCAACCTCTTGTTGGAAGATTATTCAAAAGCATTATCTGCATATCAGAGATATTACAGTTTAC--AG 360
Query 267 GC----------------CCCGCGTTCCT-TACCGCC----------------------CA------------- 288
|| .|.|||||..| ||..||| ||
Sbjct 361 GCTGACTACTGGAAGAATGCTGCGTTTTTATATGGCCTTGGTTTGGTCTACTTCTACTACAATGCATTTCATTG 434
Query 289 -GCCAGTA------------------TTTATTTTG------GCTCTGCTCCATGGCCAAGG------------- 324
||.|.|| |||||.||| |||.|..||.| |||||||
Sbjct 435 GGCAATTAAAGCATTTCAAGATGTCCTTTATGTTGACCCCAGCTTTTGTCGA--GCCAAGGAAATTCATTTACG 506
Query 325 ----GGTCGGA-----AAAGTG------------------------------TTTC---TTGCCT---TTG-CT 352
||.|..| |||||| |||| |.|||| ||| ||
Sbjct 507 ACTTGGGCTCATGTTCAAAGTGAACACAGACTACAAGTCTAGTTTAAAGCATTTTCAGTTAGCCTTGATTGACT 580
Query 353 G---TCCCCGTACT----------CTGGAAT---ACTTC-----GCCCCTTGCT-------CCAGA------CT 392
| |||..||||| |||.||| |.||| ||||.||..| ||||| .|
Sbjct 581 GTAATCCATGTACTTTGTCCAATGCTGAAATTCAATTTCATATTGCCCATTTGTATGAAACCCAGAGGAAGTAT 654
Query 393 CCCTTCTACTCTG---AGGA--------AAAAAAAAATCGGACGCTTTGG--GACCGGGCTAAACCGGGT--CT 451
| |.|||| |||| ||.|| ||||.| |||.| .||||| | ||
Sbjct 655 C------ATTCTGCAAAGGAGGCATATGAACAA-----------CTTTTGCAGACAG---AAAACC---TTCCT 705
Query 452 ACACCA-------CA-------TGC--CTGTTACTT-------------------------------------- 471
.|||.| || ||| |.||||..|
Sbjct 706 GCACAAGTAAAAGCAACTGTATTGCAACAGTTAGGTTGGATGCATCATAATATGGATCTAGTAGGAGACAAAGC 779
Query 472 -------------------------------------------------------------------------- 471
Sbjct 780 CACAAAGGAAAGCTATGCTATTCAGTATCTCCAAAAGTCTTTGGAGGCAGATCCTAATTCTGGCCAATCGTGGT 853
Query 472 -------------------------------------------------------------------------- 471
Sbjct 854 ATTTTCTTGGAAGGTGTTATTCAAGTATTGGGAAAGTTCAGGATGCCTTTATATCTTACAGGCAATCTATTGAT 927
Query 472 -------------------------------------------------------------------------- 471
Sbjct 928 AAATCAGAAGCAAGTGCAGATACATGGTGTTCAATAGGTGTGTTGTATCAGCAGCAAAATCAGCCTATGGATGC 1001
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1002 TTTACAGGCATATATTTGTGCTGTACAATTGGACCATGGGCATGCCGCAGCCTGGATGGACCTAGGTACTCTCT 1075
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1076 ATGAATCCTGCAATCAACCTCAAGATGCCATTAAATGCTACCTAAATGCAGCTAGAAGCAAACGTTGTAGTAAT 1149
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1150 ACCTCTACGCTTGCTGCAAGAATTAAATTTCTACAGGCTCAGTTGTGTAACCTTCCACAAAGTAGTCTACAGAA 1223
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1224 TAAAACTAAATTACTTCCTAGTATTGAGGAGGCATGGAGCCTACCAATCCCCGCAGAGCTTACCTCCAGGCAGG 1297
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1298 GTGCCATGAACACAGCACAGCAGAATGGTTCTGATAACTGGAATGGTGGCCAGAGTCTTTCACATCATCCAGTA 1371
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1372 CAGCAAGTTTATTCGTTGTGTTTGACACCACAGAAATTACAGCACTTGGAACAACTGCGAGCAAATAGAGATAA 1445
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1446 TTTAAATCCAGCACAGAAGCATCAGCTGGAACAGTTAGAAAGTCAGTTTGTCTTAATGCAGCAAATGAGACACA 1519
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1520 AAGAAGTTGCTCAGGTACGAACTACTGGAATTCATAACGGGGCCATAACTGATTCATCACTGCCTACAAACTCT 1593
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1594 GTCTCTAATCGACAACCACATGGTGCTCTGACCAGAGTATCTAGCGTCTCTCAGCCTGGAGTTCGCCCTGCTTG 1667
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1668 TGTTGAAAAACTTTTGTCCAGTGGAGCTTTTTCTGCAGGCTGTATTCCTTGTGGCACATCAAAAATTCTAGGAA 1741
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1742 GTACAGACACTATCTTGCTAGGCAGTAATTGTATAGCAGGAAGTGAAAGTAATGGAAATGTGCCTTACCTGCAG 1815
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1816 CAAAATACACACACTCTACCTCATAATCATACAGACCTGAACAGCAGCACAGAAGAGCCATGGAGAAAACAGCT 1889
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1890 ATCTAACTCCGCTCAGGCCTACCTTGGACATCTTACAGGTTTCATACAAGACAACTGCAATAAAGGGCTTCATA 1963
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1964 AAAGTCAGAGTTCATGTTTGTCAGGACCTAATGAAGAACAACCTCTGTTTTCCACTGGGTCAGCCCAGTATCAC 2037
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2038 CAGGCAACTAGCACTGGTATTAAGAAGGCGAATGAACATCTCACTCTGCCTAGTAATTCAGTACCACAGGGGGA 2111
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2112 TGCTGACAGTCACCTCTCCTGTCATACTGCTACCTCAGGTGGACAACAAGGCATTATGTTTACCAAAGAGAGCA 2185
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2186 AGCCTTCAAAAAATAGATCCTTGGTGCCTGAAACAAGCAGGCATACTGGAGACACATCTAATGGCTGTGCTGAT 2259
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2260 GTCAAGGGACTTTCTAATCATGTTCATCAGTTGATAGCAGATGCTGTTTCCAGTCCTAACCATGGAGATTCACC 2333
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2334 AAATTTATTAATTGCAGACAATCCTCAGCTCTCTGCTTTGTTGATTGGAAAAGCCAATGGCAATGTGGGTACTG 2407
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2408 GAACCTGTGACAAAGTGAATAATATTCACCCAGCTGTTCATACAAAGACTGATCATTCTGTTGCCTCTTCACCC 2481
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2482 TCTTCAGCCATTTCCACAGCAACACCTTCTCCTAAATCCACTGAGCAGAGAAGCATAAACAGTGTTACCAGCCT 2555
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2556 TAACAGTCCTCACAGTGGATTACACACAGTCAATGGAGAGGGGCTGGGGAAGTCACAGAGCTCTACAAAAGTAG 2629
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2630 ACCTGCCTTTAGCTAGCCACAGATCTACTTCTCAGATCTTACCATCAATGTCAGTGTCTATATGCCCCAGTTCA 2703
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2704 ACAGAAGTTCTGAAAGCATGCAGGAATCCAGGTAAAAATGGCTTGTCTAATAGCTGCATTTTGTTAGATAAATG 2777
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2778 TCCACCTCCAAGACCACCAACTTCACCATACCCACCCTTGCCAAAGGACAAGTTGAATCCACCCACACCTAGTA 2851
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2852 TTTACTTGGAAAATAAACGTGATGCTTTCTTTCCTCCATTACATCAATTTTGTACAAATCCAAAAAACCCTGTT 2925
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2926 ACAGTAATACGTGGCCTTGCTGGAGCTCTTAAATTAGATCTTGGACTTTTCTCTACCAAAACTTTGGTAGAAGC 2999
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3000 TAACAATGAACATATGGTAGAAGTGAGGACACAGTTGCTGCAACCAGCAGATGAAAACTGGGATCCCACTGGAA 3073
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3074 CAAAGAAAATCTGGCGTTGTGAAAGCAATAGATCTCATACTACAATTGCCAAATACGCACAATACCAGGCTTCC 3147
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3148 TCCTTCCAGGAATCATTGAGAGAAGAAAATGAGAAAAGAACACAACACAAAGATCATTCAGATAACGAATCCAC 3221
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3222 ATCTTCAGAGAATTCTGGAAGGAGAAGGAAAGGACCTTTTAAAACCATAAAATTTGGGACCAACATTGACCTCT 3295
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3296 CTGATAACAAAAAGTGGAAGTTGCAGTTACATGAACTGACTAAACTTCCTGCTTTTGCGCGTGTGGTGTCAGCA 3369
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3370 GGAAATCTTCTAACCCATGTTGGGCATACCATTCTGGGCATGAATACAGTACAACTGTATATGAAAGTTCCAGG 3443
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3444 GAGTCGGACACCAGGTCACCAAGAAAATAACAACTTCTGCTCTGTTAACATAAATATTGGTCCAGGAGATTGTG 3517
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3518 AATGGTTTGTTGTACCTGAAGATTATTGGGGTGTTCTGAATGACTTCTGTGAAAAAAATAATTTGAATTTTTTA 3591
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3592 ATGAGTTCTTGGTGGCCCAACCTTGAAGATCTTTATGAAGCAAATGTCCCTGTGTATAGATTTATTCAGCGACC 3665
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3666 TGGAGATTTGGTCTGGATAAATGCAGGCACTGTGCATTGGGTTCAAGCTGTTGGCTGGTGCAATAACATTGCCT 3739
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3740 GGAATGTTGGTCCACTTACAGCCTGCCAGTATAAATTGGCAGTGGAACGGTATGAATGGAACAAATTGAAAAGT 3813
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3814 GTGAAGTCACCAGTACCCATGGTGCATCTTTCCTGGAATATGGCACGAAATATCAAAGTCTCAGATCCAAAGCT 3887
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3888 TTTTGAAATGATTAAGTATTGTCTTTTGAAAATTCTGAAGCAATATCAGACATTGAGAGAAGCTCTTGTTGCAG 3961
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3962 CAGGAAAAGAGGTTATATGGCATGGGCGGACAAATGATGAACCAGCTCATTACTGTAGCATTTGTGAGGTGGAG 4035
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4036 GTTTTTAATCTGCTTTTTGTCACTAATGAAAGCAATACTCAAAAAACCTACATAGTACATTGCCATGATTGTGC 4109
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4110 ACGAAAAACAAGCAAAAGTTTGGAAAATTTTGTGGTGCTCGAACAGTACAAAATGGAGGACCTAATCCAAGTTT 4183
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4184 ATGATCAATTTACACTAGCCTCCCCATGGCCACCCATGGACCAGTCGGCATTCACTTCCTCCCTTCTGCGGCCC 4257
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4258 ATAAAAGCCCTGGGTTCAGGCAGAGCTGAGCAGACATCAGGTGACCAGCTGCAGAAAGGAGCTACCCACTCCAG 4331
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4332 GGCCTCATCTCTGCTGAGAGCTGCAGAGATGACCAGAAGACCTGCATCCAGAGAGGAGCTTCCTGATCCAGGGC 4405
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4406 TATTCTGTCACTCAATAAAGCTTCTCTTTGTCTTGTTCTCCTTCCATTTGTCCACGTTCCTCATTCTTCCCTGC 4479
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4480 CAAAGGAGAAGAACTTGGGAGCTGCTGGATGGTGGGGCTGAAAGCTGTAAAACAAACAGGGCTAACACGCCCAT 4553
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4554 TGCTCACTACCTTGTGAGTGAAGAGGAGAGAAGAGCTGTAGCCCTTCAGAGAGTCCAGACCTGGGAGCTCCTTG 4627
Query 472 ----------- 471
Sbjct 4628 AGCCAGGGTTG 4638
