Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11214
- Subject:
- XR_001756008.2
- Aligned Length:
- 4781
- Identities:
- 397
- Gaps:
- 4345
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGCTACAACTAAGTGGTTGGGAGCGGGGAGGTCGCGGCGGCTGCGTGGGGTTCGCCCGTGACACAATTACAACT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTGTGCTGGTGCTGGCAAAGTTTGTGATTTTAAGAAATTCTGCTGTGCTCTCCAGCACTGCGAGCTTCTGCCTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCCTGTAGTTTCCCAGATGTGATCCAGGTAGCCGAGTTCCGCTGCCCGTGCTTCGGTAGCTTAAGTCTTTGCCT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CAGCTTTTTTCCTTGCAGCCGCTGAGGAGGCGATAAAATTGGCGTCACAGTCTCAAGCAGCGATTGAAGGCGTC 296
Query 1 -----------------------------------------------------------ATGAAATCGTGCGCA 15
||||||||.||||||
Sbjct 297 TTTTCAACTACTCGATTAAGGTTGGGTATCGTCGTGGGACTTGGAAATTTGTTGTTTCCATGAAATCCTGCGCA 370
Query 16 GTGTCGCTCACTACCGCCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGA 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GTGTCGCTCACTACCGCCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGA 444
Query 90 GAGTGAAGAGGAGTCTGTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCG 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GAGTGAAGAGGAGTCTGTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCG 518
Query 164 GGTTCGTGAGGCTTCATGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGG-------------------- 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GGTTCGTGAGGCTTCATGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGGCTGTTCGCTGCTACGAATCT 592
Query 218 -------TAAAAGC--AACCAGACGCAAAG------------TCTTT---------GGTCCGCACTT------- 254
||||||| | |.|.|||| ||||| ||| |||||
Sbjct 593 TTAATCTTAAAAGCTGA-----AGGAAAAGTGGAGTCTGACTTCTTTTGCCAATTAGGT---CACTTCAACCTC 658
Query 255 -----------------------------TGC------------------TCTACCAAGGC------------- 268
||| |.||| ||||
Sbjct 659 TTGTTGGAAGATTATTCAAAAGCATTATCTGCATATCAGAGATATTACAGTTTAC--AGGCTGACTACTGGAAG 730
Query 269 ---CCCGCGTTCCT-TACCGCC----------------------CA--------------GCCAGTA------- 295
.|.|||||..| ||..||| || ||.|.||
Sbjct 731 AATGCTGCGTTTTTATATGGCCTTGGTTTGGTCTACTTCTACTACAATGCATTTCATTGGGCAATTAAAGCATT 804
Query 296 -----------TTTATTTTG------GCTCTGCTCCATGGCCAAGG-----------------GGTCGGA---- 331
|||||.||| |||.|..||.| ||||||| ||.|..|
Sbjct 805 TCAAGATGTCCTTTATGTTGACCCCAGCTTTTGTCGA--GCCAAGGAAATTCATTTACGACTTGGGCTCATGTT 876
Query 332 -AAAGTG------------------------------TTTC---TTGCCT---TTG-CTG---TCCCCGTACT- 363
|||||| |||| |.|||| ||| ||| |||..|||||
Sbjct 877 CAAAGTGAACACAGACTACAAGTCTAGTTTAAAGCATTTTCAGTTAGCCTTGATTGACTGTAATCCATGTACTT 950
Query 364 ---------CTGGAAT---ACTTC-----GCCCCTTGCT-------CCAGA------CTCCCTTCTACTCTG-- 405
|||.||| |.||| ||||.||..| ||||| .|| |.||||
Sbjct 951 TGTCCAATGCTGAAATTCAATTTCATATTGCCCATTTGTATGAAACCCAGAGGAAGTATC------ATTCTGCA 1018
Query 406 -AGGA--------AAAAAAAAATCGGACGCTTTGG--GACCGGGCTAAACCGGGT--CTACACCA-------CA 459
|||| ||.|| ||||.| |||.| .||||| | ||.|||.| ||
Sbjct 1019 AAGGAGGCATATGAACAA-----------CTTTTGCAGACAG---AAAACC---TTCCTGCACAAGTAAAAGCA 1075
Query 460 -------TGC--CTGTTACTT----------------------------------------------------- 471
||| |.||||..|
Sbjct 1076 ACTGTATTGCAACAGTTAGGTTGGATGCATCATAATATGGATCTAGTAGGAGACAAAGCCACAAAGGAAAGCTA 1149
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1150 TGCTATTCAGTATCTCCAAAAGTCTTTGGAGGCAGATCCTAATTCTGGCCAATCGTGGTATTTTCTTGGAAGGT 1223
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1224 GTTATTCAAGTATTGGGAAAGTTCAGGATGCCTTTATATCTTACAGGCAATCTATTGATAAATCAGAAGCAAGT 1297
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1298 GCAGATACATGGTGTTCAATAGGTGTGTTGTATCAGCAGCAAAATCAGCCTATGGATGCTTTACAGGCATATAT 1371
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1372 TTGTGCTGTACAATTGGACCATGGGCATGCCGCAGCCTGGATGGACCTAGGTACTCTCTATGAATCCTGCAATC 1445
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1446 AACCTCAAGATGCCATTAAATGCTACCTAAATGCAGCTAGAAGCAAACGTTGTAGTAATACCTCTACGCTTGCT 1519
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1520 GCAAGAATTAAATTTCTACAGAATGGTTCTGATAACTGGAATGGTGGCCAGAGTCTTTCACATCATCCAGTACA 1593
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1594 GCAAGTTTATTCGTTGTGTTTGACACCACAGAAATTACAGCACTTGGAACAACTGCGAGCAAATAGAGATAATT 1667
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1668 TAAATCCAGCACAGAAGCATCAGCTGGAACAGTTAGAAAGTCAGTTTGTCTTAATGCAGCAAATGAGACACAAA 1741
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1742 GAAGTTGCTCAGGTACGAACTACTGGAATTCATAACGGGGCCATAACTGATTCATCACTGCCTACAAACTCTGT 1815
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1816 CTCTAATCGACAACCACATGGTGCTCTGACCAGAGTATCTAGCGTCTCTCAGCCTGGAGTTCGCCCTGCTTGTG 1889
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1890 TTGAAAAACTTTTGTCCAGTGGAGCTTTTTCTGCAGGCTGTATTCCTTGTGGCACATCAAAAATTCTAGGAAGT 1963
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1964 ACAGACACTATCTTGCTAGGCAGTAATTGTATAGCAGGAAGTGAAAGTAATGGAAATGTGCCTTACCTGCAGCA 2037
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2038 AAATACACACACTCTACCTCATAATCATACAGACCTGAACAGCAGCACAGAAGAGCCATGGAGAAAACAGCTAT 2111
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2112 CTAACTCCGCTCAGGGGCTTCATAAAAGTCAGAGTTCATGTTTGTCAGGACCTAATGAAGAACAACCTCTGTTT 2185
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2186 TCCACTGGGTCAGCCCAGTATCACCAGGCAACTAGCACTGGTATTAAGAAGGCGAATGAACATCTCACTCTGCC 2259
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2260 TAGTAATTCAGTACCACAGGGGGATGCTGACAGTCACCTCTCCTGTCATACTGCTACCTCAGGTGGACAACAAG 2333
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2334 GCATTATGTTTACCAAAGAGAGCAAGCCTTCAAAAAATAGATCCTTGGTGCCTGAAACAAGCAGGCATACTGGA 2407
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2408 GACACATCTAATGGCTGTGCTGATGTCAAGGGACTTTCTAATCATGTTCATCAGTTGATAGCAGATGCTGTTTC 2481
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2482 CAGTCCTAACCATGGAGATTCACCAAATTTATTAATTGCAGACAATCCTCAGCTCTCTGCTTTGTTGATTGGAA 2555
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2556 AAGCCAATGGCAATGTGGGTACTGGAACCTGTGACAAAGTGAATAATATTCACCCAGCTGTTCATACAAAGACT 2629
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2630 GATCATTCTGTTGCCTCTTCACCCTCTTCAGCCATTTCCACAGCAACACCTTCTCCTAAATCCACTGAGCAGAG 2703
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2704 AAGCATAAACAGTGTTACCAGCCTTAACAGTCCTCACAGTGGATTACACACAGTCAATGGAGAGGGGCTGGGGA 2777
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2778 AGTCACAGAGCTCTACAAAAGTAGACCTGCCTTTAGCTAGCCACAGATCTACTTCTCAGATCTTACCATCAATG 2851
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2852 TCAGTGTCTATATGCCCCAGTTCAACAGAAGTTCTGAAAGCATGCAGGAATCCAGGTAAAAATGGCTTGTCTAA 2925
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2926 TAGCTGCATTTTGTTAGATAAATGTCCACCTCCAAGACCACCAACTTCACCATACCCACCCTTGCCAAAGGACA 2999
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3000 AGTTGAATCCACCCACACCTAGTATTTACTTGGAAAATAAACGTGATGCTTTCTTTCCTCCATTACATCAATTT 3073
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3074 TGTACAAATCCAAAAAACCCTGTTACAGTAATACGTGGCCTTGCTGGAGCTCTTAAATTAGATCTTGGACTTTT 3147
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3148 CTCTACCAAAACTTTGGTAGAAGCTAACAATGAACATATGGTAGAAGTGAGGACACAGTTGCTGCAACCAGCAG 3221
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3222 ATGAAAACTGGGATCCCACTGGAACAAAGAAAATCTGGCGTTGTGAAAGCAATAGATCTCATACTACAATTGCC 3295
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3296 AAATACGCACAATACCAGGCTTCCTCCTTCCAGGAATCATTGAGAGAAGAAAATGAGAAAAGAACACAACACAA 3369
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3370 AGATCATTCAGATAACGAATCCACATCTTCAGAGAATTCTGGAAGGAGAAGGAAAGGACCTTTTAAAACCATAA 3443
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3444 AATTTGGGACCAACATTGACCTCTCTGATAACAAAAAGTGGAAGTTGCAGTTACATGAACTGACTAAACTTCCT 3517
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3518 GCTTTTGCGCGTGTGGTGTCAGCAGGAAATCTTCTAACCCATGTTGGGCATACCATTCTGGGCATGAATACAGT 3591
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3592 ACAACTGTATATGAAAGTTCCAGGGAGTCGGACACCAGGTCACCAAGAAAATAACAACTTCTGCTCTGTTAACA 3665
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3666 TAAATATTGGTCCAGGAGATTGTGAATGGTTTGTTGTACCTGAAGATTATTGGGGTGTTCTGAATGACTTCTGT 3739
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3740 GAAAAGATTCAGAACAGCAGTAGAGGATGATTTCTGCTCTCCTTCTCACCCCTGACTCAGGAATTGAGAGAAGG 3813
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3814 TCCTGGTTCTTATATCTGCCACAAAATAATTTGAATTTTTTAATGAGTTCTTGGTGGCCCAACCTTGAAGATCT 3887
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3888 TTATGAAGCAAATGTCCCTGTGTATAGATTTATTCAGCGACCTGGAGATTTGGTCTGGATAAATGCAGGCACTG 3961
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3962 TGCATTGGGTTCAAGCTGTTGGCTGGTGCAATAACATTGCCTGGAATGTTGGTCCACTTACAGCCTGCCAGTAT 4035
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4036 AAATTGGCAGTGGAACGGTATGAATGGAACAAATTGAAAAGTGTGAAGTCACCAGTACCCATGGTGCATCTTTC 4109
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4110 CTGGAATATGGCACGAAATATCAAAGTCTCAGATCCAAAGCTTTTTGAAATGATTAAGTAAGTGCCTTCTGAAA 4183
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4184 CTGCTGCAGTTTCTCTTTGGGGGTATTGGTAGCCATTCAGTATTTTTTTCAAAAGAATTCTGTTGACATTAAAT 4257
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4258 GATATCAGCAGTCCAGAAGTCTTGGCAAAATGTAATAAGATGTAAATAATCTTATATATTCATAAGTGTTATAA 4331
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4332 AATCTCATAAGATTAAAATATTGCCTTCCCTTACAGATAGTCACTTGTGTTTATTACAATTTAGAGAGGAATAA 4405
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4406 AGATGTACATGAATATACACTGGTAAATTTACAACTCTCTATTTTCTCGTAATTCTGATAAAACTGATTTCCCA 4479
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4480 GGACAACTTGTTTTACTATTTTAAAATAATTTTTGTTGCTTATTTTTTATGTTTATATTAAGGTATAGTTTATA 4553
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4554 GTGCAAATTGTATACATTTAAGATGTACAGCCTGATGATTTGATAAACATATATATGAATATGAAAGTACTGGC 4627
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4628 ACCTCTCTTTGCTTCTCTTGCCATATGATCTCTGTATGTACCAGTTCCCCTTCCCCTTCCAAAGCCCTCACCAG 4701
Query 472 --------------------------------------------- 471
Sbjct 4702 AAGCAGATGCTGGTCCCATATTTCTTGTACAGCTTGCAGAACTGT 4746
