Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11236
- Subject:
- NM_001348434.2
- Aligned Length:
- 2268
- Identities:
- 365
- Gaps:
- 1887
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGAACATTGACGACAAACTGGAAGGATTGTTTCTTAAATGTGGCGGCATAGACGAAATGCAGTCTTCCAGGAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AATGGTTGTAATGGGTGGAGTGTCTGGCCAGTCTACTGTGTCTGGAGAGCTACAGGATTCAGTACTTCAAGATC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GAAGTATGCCTCACCAGGAGATCCTTGCTGCAGATGAAGTGTTACAAGAAAGTGAAATGAGACAACAGGATATG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ATATCACATGATGAACTCATGGTCCATGAGGAGACAGTGAAAAATGATGAAGAGCAGATGGAAACACATGAAAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ACTTCCTCAAGGACTACAGTATGCACTTAATGTCCCTATCCTTACAATAAATGAGGATGGATCACTTGGTTTGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAACCCCTAAATCTCACGTTTGTGAGCACTGCAATGCTGCCTTTAGAACGAACTATCACTTACAGAGACATGTC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TTCATTCATACAGGTGAAAAACCATTTCAATGTAGTCAATGTGACATGCGTTTCATACAGAAGTACCTGCTTCA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GAGACATGAGAAGATTCATACTGGTGAAAAACCATTTCGCTGTGATGAATGTGGTATGAGATTCATACAAAAAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 ATCATATGGAAAGGCATAAGAGAACTCATAGTGGAGAAAAACCTTACCAGTGTGAATACTGTTTACAGTATTTT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TCCAGAACAGATCGTGTATTGAAACATAAACGTATGTGCCATGAAAATCATGACAAAAAACTAAATAGATGTGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CATCAAAGGTGGCCTTCTGACATCTGAGGAAGATTCTGGCTTTTCTACATCACCAAAAGACAACTCACTGCCAA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAAAGAAAAGGCAGAAAACGGAGAAAAAATCATCTGGAATGGACAAAGAGAGTGCTTTGGACAAATCTGACCTG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AAAAAAGACAAAAATGATTACTTGCCTCTTTATTCTTCAAGTACTAAAGTAAAAGATGAGTATATGGTTGCAGA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ATATGCTGTTGAAATGCCACATTCGTCAGTTGGGGGCTCGCATTTAGAAGATGCGTCAGGAGAAATACACCCAC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CTAAGTTAGTTCTCAAAAAAATTAATAGTAAGAGAAGTCTGAAACAGCCACTGGAGCAAAATCAAACAATTTCA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CCTTTATCCACATATGAAGAGAGCAAAGTTTCAAAGTATGCTTTTGAACTTGTGGATAAACAGGCTTTACTGGA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CTCAGAAGGCAATGCTGACATTGATCAGGTTGATAATTTGCAGGAGGGGCCCAGTAAACCTGTGCATAGTAGTA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CTAATTATGATGATGCCATGCAGTTTTTGAAGAAGAAGCGGTATCTTCAAGCAGCAAGTAACAACAGCAGGGAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TATGCGCTGAATGTGGGTACCATAGCTTCTCAGCCTTCTGTAACACAAGCAGCTGTGGCAAGTGTCATTGATGA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AAGTACCACGGCATCCATATTAGAGTCACAGGCACTGAATGTGGAGATTAAGAGTAATCATGACAAAAATGTTA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TTCCAGATGAGGTACTGCAGACTCTGTTGGATCATTATTCCCACAAAGCTAATGGACAGCATGAGATATCCTTC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AGTGTTGCAGATACTGAAGTGACTTCTAGCATATCAATAAATTCTTCAGAAGTACCAGAGGTCACCCCGTCAGA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GAATGTTGGATCAAGCTCCCAAGCATCCTCATCAGATAAAGCCAACATGTTGCAGGAATACTCCAAGTTTCTGC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AGCAGGCTTTGGACAGAACTAGCCAAAATGATGCCTATTTGAATAGCCCGAGCCTTAACTTTGTGACTGATAAC 1776
Query 1 ---------------------------------------------------------ATGC----------GTT 7
|||| .||
Sbjct 1777 CAGACCCTCCCAAATCAGCCAGCATTCTCTTCCATAGACAAGCAGGTCTATGCCACCATGCCCATCAATAGCTT 1850
Query 8 TC-ATACAG----------------AAGTACCTGCTTCAGAGA-----CA---TGAGAAGATTCATA-CTGGTG 55
|| || ||| ||| |.|..||.||||.| || || ||.|.||| .|||||
Sbjct 1851 TCGAT-CAGGAATGAATTCTCCACTAAG-AACAACTCCAGATAAGTCCCACTTTG----GACTAATAGTTGGTG 1918
Query 56 AAAAAC------CATTTCGCTGTGATGAATGTGGTGATGAGACAAACCATGCTTCTGCCACATCAACACAGGAC 123
|...|| ||||||.||.| |..||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 ATTCACAGCACTCATTTCCCTTT------TCAGGTGATGAGACAAACCATGCTTCTGCCACATCAACACAGGAC 1986
Query 124 TTTCTGGATCAAGTGACTTCTCAGAAGAAAGCTGAGGCCCAGCCTGTCCACCAAGCTTACCAAATGAGCTCCTT 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1987 TTTCTGGATCAAGTGACTTCTCAGAAGAAAGCTGAGGCCCAGCCTGTCCACCAAGCTTACCAAATGAGCTCCTT 2060
Query 198 TGAACAGCCCTTCCGTGCTCCCTATCATGGATCAAGAGCTGGAATAGCTACTCAATTTAGCACTGCCAATGGAC 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2061 TGAACAGCCCTTCCGTGCTCCCTATCATGGATCAAGAGCTGGAATAGCTACTCAATTTAGCACTGCCAATGGAC 2134
Query 272 AGGTGAACCTTCGGGGACCAGGGACAAGTGCTGAATTTTCAGAATTTCCCTTGGTGAATGTAAATGATAATAGA 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2135 AGGTGAACCTTCGGGGACCAGGGACAAGTGCTGAATTTTCAGAATTTCCCTTGGTGAATGTAAATGATAATAGA 2208
Query 346 GCTGGGATGACATCTTCACCTGATGCCACAACTGGCCAGACTTTTGGC 393
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2209 GCTGGGATGACATCTTCACCTGATGCCACAACTGGCCAGACTTTTGGC 2256
