Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11236
Subject:
NM_011749.4
Aligned Length:
2391
Identities:
352
Gaps:
2007

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGAACATTGACGACAAACTGGAAGGATTGTTTCTTAAATGTGGCGGCATAGACGAAATGCAGTCTTCCAGGGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AATGGTTGTAATGGGTGGAGTGTCTGGCCAGTCCGCCGTGTCTGGAGAACTGCAGGAGTCAGTACTTCAAGATC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GAAGTTTGCCTCACCAGGAGATCCTTGCTGCAGACGAAGTGTTACAAGAGAGTGAAATGAGACAACAGGATATG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ATATCCCATGATGAACTCATGGTCCACGAGGAGACAGTGAAAAATGACGAAGAGCAGATGGACACCCACGAGCG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GCTTCCCCAAGGACTGCAGTATGCACTCAATGTCCCTATAAGTGTAAAGCAGGAAATTACTTTTACTGATGTAT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTGAGCAACTGATGAGAGACAAAAAACAAGTCAGAGAGCCAGTAGACTTACAGAAAAAGAAGAAGCGGAAACAA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CGCTCTCCTGCAAAAATCCTTACAATAAATGAGGATGGATCACTTGGTTTGAAAACCCCTAAATCTCACGTTTG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TGAGCACTGCAATGCTGCCTTTAGAACGAACTATCACTTACAGAGGCATGTCTTCATTCATACAGGCGAAAAAC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CGTTTCAATGTAGTCAATGTGACATGCGTTTCATACAGAAGTACCTGCTTCAGAGACACGAGAAGATCCATACC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GGTGAAAAACCATTTCGCTGTGATGAATGTGGTATGAGATTCATACAGAAATATCACATGGAAAGGCACAAAAG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AACTCACAGTGGAGAGAAGCCTTATCAGTGTGAATACTGCTTACAGTATTTTTCCAGAACAGATCGTGTATTGA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AACATAAACGTATGTGCCATGAAAATCACGACAAAAAACTAAACAGATGTGCCATCAAAGGTGGCCTTCTGACA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TCAGAGGAAGATTCTGGCTTTTCTACATCACCAAAAGATAATTCACTGCCAAAAAAGAAAAGGCAAAAAACTGA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GAAGAAATCGTCTGGGATGGACAAGGAGAGTGTGCTGGACAAATCTGACCTGAAGAAAGACAAGAACGATTACC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TGCCTCTCTACTCGTCGAGCACTAAAGTAAAGGATGAGTACATGGTGGCAGAGTATGCTGTTGAGATGCCACAC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TCATCAGTGGGAGGCTCTCACCTAGAAGATGCATCTGGAGAAATACACCCACCCAAGTTGGTTCTCAAAAAAAT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  CAATAGTAAGAGAAGTCTGAAGCAGCCCTTGGAGCAAAGTCAAACCATTTCACCCCTATCCAGCTATGAAGACA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GCAAAGTTTCCAAGTACGCTTTTGAGCTTGTGGATAAGCAGGCGTTACTGGACTCAGAAGGCAGTGCTGACATC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GATCAAGTGGATAACTTGCAGGAGGGCCCCAGCAAACCTGTGCACAGCAGTACTAATTACGACGATGCCATGCA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GTTTCTGAAGAAGAAGCGGTATCTTCAAGCTGCAAGTAACAACAGCAGGGAGTACGCACTGAATGTGGGCACCA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TAGCCTCTCAGCCTTCTGTGACACAAGCCGCCGTGGCCAGCGTCATTGATGAAAGCACCACAGCATCCATACTG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GATTCCCAGGCACTGAATGTGGAGATTAAGAGCAATCATGACAAAAATGTTATCCCAGATGAGGTCCTGCAGAC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TCTGCTGGATCATTATTCCCACAAACCTAATGGACAGCATGAGATTTCCTTCAGCGTTGCAGATACTGAAGTGA  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CTTCTAGCATATCAATCAATTCTTCCGATGTACCTGAAGTCACCCAGTCAGAGAATGTTGGATCAAGCTCCCAA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GCATCCTCATCAGATAAAGCTAACATGTTGCAGGAATACTCCAAGTTTCTGCAGCAGGCTTTGGACAGAACTAG  1850

Query    1  -----------------------------------------------------------------ATGCG----  5
                                                                             ||.||    
Sbjct 1851  CCAAAACGATGCCTATTTGAATAGCCCGAGCCTTAACTTTGTGACTGACAACCAGACCCTTCCAAATCCGCCAG  1924

Query    6  -------TTTCATACAGAAGTA------------CCTGC----------------TTCAGAGACATG-------  37
                   ||.||||.|.|||.|            |.|||                .|||| || |||       
Sbjct 1925  CATTCTCTTCCATAGACAAGCAAGTCTATGCAGCCATGCCCATCAATAGCTTTCGATCAG-GA-ATGAATTCTC  1996

Query   38  -----AGAA------------------------GATTCATACT-GGTG------AAAAACCATTTCGCTGTGAT  75
                 ||||                        ||.|.|||.| ||||      |..|.||.||||.||.|   
Sbjct 1997  CACTAAGAACAACTCCAGATAAGTCCCACTTTGGACTAATAGTCGGTGACTCACAGCACCCGTTTCCCTTT---  2067

Query   76  GAATGTGGTGATGAGACAAACCATGCTTCTGCCACATCAACA-CAGGACTTTCTGGATCAAGTGACTTCTCAGA  148
               |..|||||.|||||||||||.||.||||||||.|||||| || ||||||.||||||||||.||||||||||
Sbjct 2068  ---TCAGGTGACGAGACAAACCACGCCTCTGCCACGTCAACAGCA-GACTTTTTGGATCAAGTCACTTCTCAGA  2137

Query  149  AGAAAGCTGAGGCCCAGCCTGTCCACCAAGCTTACCAAATGAGCTCCTTTGAACAGCCCTTCCGTGCTCCCTAT  222
            |||||||||||||.||||||||||||||.|||||||||||||||||||||||.|||||||||||||||||.|||
Sbjct 2138  AGAAAGCTGAGGCACAGCCTGTCCACCAGGCTTACCAAATGAGCTCCTTTGAGCAGCCCTTCCGTGCTCCATAT  2211

Query  223  CATGGATCAAGAGCTGGAATAGCTACTCAATTTAGCACTGCCAATGGACAGGTGAACCTTCGGGGACCAGGGAC  296
            ||||||||.||||||||||||||.|||||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2212  CATGGATCCAGAGCTGGAATAGCAACTCAGTTTAGCACTGCCAATGGACAGGTGAACCTTCGGGGACCAGGGAC  2285

Query  297  AAGTGCTGAATTTTCAGAATTTCCCTTGGTGAATGTAAATGATAATAGAGCTGGGATGACATCTTCACCTGATG  370
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||
Sbjct 2286  AAGTGCTGAATTTTCAGAATTTCCCTTGGTGAATGTAAATGATAATAGAGCTGGGATGACATCTTCACCAGATG  2359

Query  371  CCACAACTGGCCAGACTTTTGGC  393
            |||||||||||||||||||||||
Sbjct 2360  CCACAACTGGCCAGACTTTTGGC  2382

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