Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11249
- Subject:
- XR_377291.3
- Aligned Length:
- 2894
- Identities:
- 1475
- Gaps:
- 1267
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TCACTAATGCGTTCATGGGCATGTGAATGTCCCAAACATATGTAGCATGTGTCTTTTCATCTACTTGTAATTAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ATAAATGTACAGCCTTAGATGTCAGCCTTCCATAATTTAGAGATAATAATCTGGAGTCCTTCTGAAATTGCTTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TAAATGTAGATCATTTTTCTCATTTCAGATGCTCCTAATTCCCTTGCAAAGCTTTATTTGCTGTAATATAACCG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGAACCCTGATCTGCATGTCATTGTGGTTAGCTGATAGAAGGCCAGTATTTAAATTTCTTTGAGGTCTCTTGCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GAGTGGCGTCACAGGATGAAGAGCTCTTCAGGAGGGGGAATGTGCTTGTGGTTTTTGGTCTTGTGCATTTTGTG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ACAAAGGAATTCCCTTTTGAATCGCGCTGTTCCCTTGAAACCCTGGAGCCTCTGGTTCAAGCAGCGCAGTCAGT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTGTGCAGTGTCCCTGACGTCATCCGGCGTATGCATAAGCTCTGCTATTGTCTTACCGCTAGAGCAGGGCTGAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GACTGCAGTCTCTGCTGCTGCTCGCAGACCTGCCCTGCGCTAGCTACCTAGCCCTGCCTCACTGCATCCCTCAA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GAGCCGCGGCAGCCTTTCCTTGCCTGCTGGATTTTGAGAAGCAGCTCTTCGATTTGGGCTGGTGTAGGAGCCCT 666
Query 1 -------------------ATGGCTGAAGCGGCCA-CGGGCTTTCTGG-AGC-------AGCTCAAGTCCTGCA 46
|..|||||||||..|| .||....||||| ||| ||||| |..|||||
Sbjct 667 GGCTTTCCATTCTCGAGAGAAAGCTGAAGCGCTCAGAGGAGAATCTGGCAGCTGGACATAGCTC--GGACTGCA 738
Query 47 TAGTTTGGTCTT--GGACGTAT-CTGTGGA-CCG---------TGTGGT------------------TCTT-CA 88
|.||.||| ||| .|||...| |||||.| ||| |.||.| |||| ||
Sbjct 739 TTGTCTGG-CTTCATGACCCCTGCTGTGTAGCCGGCTCATCTCTTTGCTCTCAGGAGCACATGCACATCTTACA 811
Query 89 TCGTGCTA-TTCC-------------------TGGTCTACAT--------------CCTGCGGGTGCC------ 122
|..|.||| |||| |..|||| || |||.|.||.|||
Sbjct 812 TTTTCCTACTTCCTTTTTCTTTTTCTTTCCCTTCTTCTA-ATTTTTTTTTAAAGCACCTTCTGGAGCCAGCCAT 884
Query 123 -TTTGAAAATCAACGACAACTTGAGCACAGTGAGCATGTTTTTGAACACATTAACACCGAAGTTCTACGTGGCC 195
||||..|.|.| |.||| ||.|||||||||||||||||||.|||||.||.|||||||||||||||
Sbjct 885 GTTTGGTACTGA-----ATCTT-----CATTGAGCATGTTTTTGAACACGTTAACCCCAAAGTTCTACGTGGCC 948
Query 196 CTAACAGGCACTTCCTCACTAATATCAGGGCTTATTTTGATATTTGAATGGTGGTATTTTCGCAAATACGGAAC 269
||.||||||||||||||.||||||||.||.|||||||||||||||||||||||||||||||||||.||.|||||
Sbjct 949 CTGACAGGCACTTCCTCGCTAATATCGGGACTTATTTTGATATTTGAATGGTGGTATTTTCGCAAGTATGGAAC 1022
Query 270 TTCATTCATTGAACAAGTCTCAGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTGACAACAACTCTTCCAACA 343
.||.|||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct 1023 ATCTTTCATTGAACAAGTCTCCGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTGACAACAACTCTTCCAATA 1096
Query 344 ---------------------ACTCAGATTCCAATAGGCAAAGTGTCTCAGAATGCAAAGTATGGCGAAATCCA 396
|||||||||||||.||.||||||||||||||||||||||||||||||||||||
Sbjct 1097 ATTCTAATTCCAGTAATGGAGACTCAGATTCCAACAGACAAAGTGTCTCAGAATGCAAAGTATGGCGAAATCCA 1170
Query 397 CTAAATTTATTTAGGGGTGCTGAATACAATCGGTATACTTGGGTGACAGGACGAGAGCCTCTTACTTACTATGA 470
||.|||.|.|||||||||||.|||||.||||||||.||||||||.|||||||||||||||||.||.||||||||
Sbjct 1171 CTGAATCTGTTTAGGGGTGCGGAATATAATCGGTACACTTGGGTCACAGGACGAGAGCCTCTGACCTACTATGA 1244
Query 471 CATGAATCTCTCTGCCCAAGACCACCAGACATTCTTTACTTGTGACTCGGACCATCTGCGTCCCGCAGATGCAA 544
||||||.|||||||||||.||||||||||||||||||||||||||.||.||.|||||.||.||.||||||||||
Sbjct 1245 CATGAACCTCTCTGCCCAGGACCACCAGACATTCTTTACTTGTGATTCAGATCATCTTCGCCCTGCAGATGCAA 1318
Query 545 TAATGCAGAAAGCCTGGAGAGAGAGAAACCCCCAAGCTAGGATTTCTGCAGCTCATGAAGCCTTGGAGATAAAT 618
|||||||.|||||.||||||||.||.|||||.|||||.|||||||||||||||||||||||||||||||||||.
Sbjct 1319 TAATGCAAAAAGCTTGGAGAGAAAGGAACCCTCAAGCCAGGATTTCTGCAGCTCATGAAGCCTTGGAGATAAAC 1392
Query 619 G---------------------------------------------------------------------AGTG 623
| ||||
Sbjct 1393 GAAATTAGGTCCAGAGTTGAAGTTCCCCTAATTGCTTCCTCTACCATCTGGGAGATAAAATTGTTACCAAAGTG 1466
Query 624 TGCAACTGCTTATATTCTCTTGGCTGAAGAGGAAGCAACAACCATTGCTGAAGCAGAAAAATTATTTAAGCAGG 697
|||||||||.||.|||||||||||.|||||.|||||.|||||.||||||||||||||||||.|.||||||||||
Sbjct 1467 TGCAACTGCGTACATTCTCTTGGCGGAAGAAGAAGCGACAACTATTGCTGAAGCAGAAAAACTCTTTAAGCAGG 1540
Query 698 CCCTGAAGGCTGGAGATGGCTGTTACCGACGCTCTCAGCAGCTACAACATCATGGATCCCAGTATGAAGCCCAA 771
|||||||||||||||||||.||||||||.||||||||||||||||||||||||||.||||||||||||||.|||
Sbjct 1541 CCCTGAAGGCTGGAGATGGTTGTTACCGGCGCTCTCAGCAGCTACAACATCATGGGTCCCAGTATGAAGCTCAA 1614
Query 772 CATAGACGAGACACCAATGTCTTGGTGTACATCAAAAGAAGGCTAGCAATGTGTGCCAGAAGACTCGGGAGGAC 845
||.||||||||||||||||||||.||.||.||||||||||||||.||.|||||||||.|.|||||.||.|||||
Sbjct 1615 CACAGACGAGACACCAATGTCTTAGTCTATATCAAAAGAAGGCTGGCGATGTGTGCCCGGAGACTTGGAAGGAC 1688
Query 846 CAGGGAAGCAGTGAAAATGATGAGAGATTTAATGAAGGAGTTCCCCCTTCTGAGTATGTTCAATATCCATGAAA 919
|||.|||||||||||.||||||||||||||||||||||||||.|||||.||.||.|||||||||||||||||.|
Sbjct 1689 CAGAGAAGCAGTGAAGATGATGAGAGATTTAATGAAGGAGTTTCCCCTCCTAAGCATGTTCAATATCCATGAGA 1762
Query 920 ACCTTTTAGAAGCCCTTCTGGAACTACAAGCATATGCTGATGTTCAGGCAGTCTTAGCAAAGTATGATGATATA 993
|||||.|||||||.|||||||||||.|||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 1763 ACCTTCTAGAAGCTCTTCTGGAACTCCAAGCTTATGCTGATGTTCAGGCAGTCTTAGCAAAGTATGATGATATA 1836
Query 994 AGCTTACCAAAGTCAGCAACAATATGCTACACAGCTGCTTTGCTCAAAGCAAGAGCTGTCTCTGACAA------ 1061
||||||||||||||.||.|||||||||||||||||.||..||||||||||||||||||||||||||||
Sbjct 1837 AGCTTACCAAAGTCGGCGACAATATGCTACACAGCCGCCCTGCTCAAAGCAAGAGCTGTCTCTGACAAATCGCC 1910
Query 1062 -------------------------------------------------------------------------- 1061
Sbjct 1911 AGTACCTACTGCAACATCTTTTCTCCCTACACAGCGACTCCAGCTTGGGAGGGCAGGGCCAGGGTTGCCACAGC 1984
Query 1062 --------------------------------------------------------ATTCTCTCCTGAGGCTGC 1079
|||||||||.||||||||
Sbjct 1985 TTCCCCTGTGGTGTCTGCCTGCCAAGCACAGCTCTGGAGTTAGCCCTGGGTGTGAGATTCTCTCCAGAGGCTGC 2058
Query 1080 ATCTCGGCGGGGGCTGAGCACAGCAGAGATGAATGCAGTAGAGGCCATTCATAGAGCTGTGGAATTCAATCCTC 1153
.||||||.||||||||||||||||||||||||||||||||||.|||||.||.||||||||||||||.|||||.|
Sbjct 2059 GTCTCGGAGGGGGCTGAGCACAGCAGAGATGAATGCAGTAGAAGCCATCCACAGAGCTGTGGAATTTAATCCAC 2132
Query 1154 ATGTGCCAAAATACCTACTAGAAATGAAAAGCTTAATCCTACCCCCAGAACATATCCTGAAGAGAGGAGACAGT 1227
|.|||||||||||.||||||||||||||||||||||||||.||.||||||||.|||||||||||||||||||||
Sbjct 2133 ACGTGCCAAAATATCTACTAGAAATGAAAAGCTTAATCCTCCCACCAGAACACATCCTGAAGAGAGGAGACAGT 2206
Query 1228 GAAGCAATAGCATATGCATTCTTTCATCTTGCACACTGGAAGAGAGTGGAAGGGGCTTTGAATCTTTTGCATTG 1301
|||||.||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||.||||||||
Sbjct 2207 GAAGCGATAGCATATGCATTCTTTCATCTTGCACACTGGAAGAGGGTGGAAGGGGCTTTGAATCTCTTGCATTG 2280
Query 1302 TACGTGGGAAGGCACTTTTCGGATGATCCCTTATCCCTTGGAAAAGGGGCACCTATTTTATCCTTACCCAATCT 1375
||||||||||||||||||.|||||||||||.||||||.||||.|||||.||||||||||||||.||||||||||
Sbjct 2281 TACGTGGGAAGGCACTTTCCGGATGATCCCGTATCCCCTGGAGAAGGGACACCTATTTTATCCATACCCAATCT 2354
Query 1376 GTACAGAAACAGCAGACCGAGAGCTGCTTCCATCTTTCCATGAAGTCTCAGTTTACCCAAAGAAGGAGCTTCCC 1449
|||||||||||||.|||||.|||||||||||.|||||||||||||||||||||||||||||||||||.||||||
Sbjct 2355 GTACAGAAACAGCTGACCGGGAGCTGCTTCCCTCTTTCCATGAAGTCTCAGTTTACCCAAAGAAGGAACTTCCC 2428
Query 1450 TTCTTTATTCTCTTTACTGCTGGATTATGTTCCTTCACAGCCATGCTGGCCCTCCTGACACATCAGTTCCCGGA 1523
|||||.||.|||||.|||||||||.|.||.||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 2429 TTCTTCATCCTCTTCACTGCTGGACTGTGCTCCTTCACAGCCATGCTGGCCCTCCTGACACATCAGTTTCCGGA 2502
Query 1524 ACTTATGGGGGTCTTCGCAAAAGCTTTCCTCAGCACTTTGTTTGCCCCCTTAAACTTTGTCATGGAGAAAGTGG 1597
|||||||||.|||||||||||||||||||||||||||||||||||||||||.||||||||.|||||||||||||
Sbjct 2503 ACTTATGGGAGTCTTCGCAAAAGCTTTCCTCAGCACTTTGTTTGCCCCCTTGAACTTTGTTATGGAGAAAGTGG 2576
Query 1598 AGAGCATCCTCCCATCCAGTCTGTGGCACCAGCTAACACGGATC------------------------------ 1641
|.|||||||||||.||||||.|||||||.|||||.|||||||||
Sbjct 2577 AAAGCATCCTCCCCTCCAGTTTGTGGCATCAGCTGACACGGATCTGAGGGAGCCTCCCATCCTTCACTTTCCAC 2650
Query 1642 -------------------------------------------------------------------------- 1641
Sbjct 2651 ACCATCCACCATCTCTTCTGTGCCAACCTCTCATGGACCGCAAGAAAGCATGACTTTGAAAAAGGGAAACCATT 2724
Query 1642 -------------------------------------------------------------------------- 1641
Sbjct 2725 CTGAGATTTTAAACTGCTCATGGACTATCAGTTCCTTATTAAAGGCTGGTTTTGTTGTACAAAATTTATTGATG 2798
Query 1642 -------------------------------------------------------------------------- 1641
Sbjct 2799 TTCAGTTCTATTTTATTTTGCCTTCAAAACTGACTGATCAAAAAGTAAAAAAAATAAATAAATAAACTTTTGTG 2872
Query 1642 -------- 1641
Sbjct 2873 TATTGCAA 2880
