Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11285
Subject:
XM_011534195.2
Aligned Length:
4059
Identities:
666
Gaps:
3393

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCTGGACCCTTCGTCCAGCGAAGAAGAATCGGATGAGATCGTGGAGGAGGAGAGCGGCAAGGAGGTGCTCGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTCGGCCCCGTCCGGCGCGCGCCTGTCTCCCAGCCGTACCAGCGAGGGCTCGGCCGGCAGCGCCGGGCTGGGGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCGGCGGCGCCGGCGCCGGAGCCGGGGTGGGTGCAGGCGGCGGCGGGGGCAGCGGCGCGAGCAGCGGCGGCGGG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCCGGGGGGCTGCAACCCAGCAGCCGCGCTGGCGGCGGCCGGCCCTCCAGCCCCAGCCCGTCGGTGGTGAGCGA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GAAGGAGAAGGAAGAGTTGGAGCGGCTGCAGAAAGAGGAGGAGGAGAGGAAGAAGAGGCTGCAGCTGTATGTGT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TCGTGATGCGCTGCATCGCCTACCCCTTTAATGCCAAGCAGCCCACCGACATGGCTCGCCGGCAGCAGAAGATC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AGCAAACAGCAGCTGCAGACAGTCAAGGACCGGTTTCAGGCTTTCCTCAATGGGGAAACCCAGATCATGGCTGA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CGAAGCCTTCATGAACGCTGTGCAGAGTTACTATGAGGTGTTCCTGAAGAGCGACCGTGTGGCCCGCATGGTTC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AGAGTGGAGGCTGTTCCGCCAACGACTCCCGGGAGGTCTTCAAGAAGCACATTGAGAAGAGAGTGCGCAGCCTG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CCTGAGATTGACGGCCTCAGCAAGGAGACTGTGCTGAGCTCCTGGATGGCCAAATTTGATGCCATCTACCGTGG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AGAAGAGGACCCGCGGAAGCAGCAGGCCCGGATGACAGCCAGCGCAGCCTCCGAGCTGATTCTGAGCAAGGAGC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AACTCTATGAGATGTTCCAGAACATTCTTGGGATCAAGAAGTTCGAACATCAGCTCCTTTACAATGCCTGCCAG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CTGGACAATCCAGATGAGCAAGCAGCCCAGATCAGACGAGAGCTGGATGGACGTCTACAAATGGCAGACCAAAT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AGCCAGGGAACGCAAATTTCCCAAGTTTGTATCCAAAGAAATGGAAAACATGTACATTGAGGAGCTGAAGTCAT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CTGTCAACCTGCTCATGGCCAACTTGGAGAGCATGCCGGTATCCAAAGGCGGGGAGTTCAAGCTCCAGAAACTC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AAACGCAGCCACAATGCTTCCATCATCGACATGGGCGAGGAGAGTGAGAACCAGCTCTCCAAGTCAGATGTCGT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GCTGTCTTTCTCATTGGAGGTGGTAATTATGGAAGTCCAAGGCCTCAAATCTTTGGCTCCAAATCGCATCGTAT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  ATTGCACAATGGAGGTGGAAGGAGGAGAGAAACTACAGACTGATCAGGCCGAGGCTTCTAAACCAACCTGGGGC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  ACCCAGGGTGACTTCTCCACAACCCATGCACTGCCAGCTGTGAAGGTGAAGCTGTTCACAGAGAGCACAGGCGT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CCTGGCGTTGGAGGACAAGGAGCTTGGGCGGGTTATTCTCCATCCCACCCCGAACAGCCCCAAACAGTCAGAGT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GGCACAAAATGACAGTCTCCAAAAACTGCCCCGACCAAGATCTCAAAATCAAACTTGCTGTCCGAATGGATAAG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CCTCAAAACATGAAGCATTCTGGGTATTTATGGGCCATCGGTAAGAATGTCTGGAAGAGATGGAAGAAAAGGTT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TTTTGTATTGGTGCAGGTCAGTCAGTACACGTTTGCCATGTGCAGTTATCGGGAGAAGAAAGCGGAGCCTCAGG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  AACTTCTACAATTGGATGGCTACACTGTGGATTACACCGACCCCCAGCCAGGTTTGGAGGGTGGCCGAGCCTTC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TTCAATGCTGTCAAGGAGGGAGACACCGTGATATTTGCCAGTGACGATGAACAAGACCGCATCCTGTGGGTCCA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GGCCATGTATCGGGCCACGGGGCAGTCACACAAGCCTGTGCCCCCGACCCAAGTCCAGAAACTCAACGCCAAGG  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  GAGGAAATGTACCTCAGCTGGATGCCCCTATCTCTCAATTTTCTGGACTGAAGGACGCAGATAGAGCTCAAAAA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  CATGGCATGGATGAATTTATCTCTTCCAACCCCTGTAACTTTGACCACGCTTCCCTCTTTGAGATGGTACAACG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  CCTTACTTTGGATCACAGACTTAATGATTCCTATTCTTGCCTGGGCTGGTTCAGTCCTGGCCAGGTGTTTGTAC  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TAGACGAGTATTGCGCCCGAAATGGAGTCCGGGGGTGTCACCGACATCTCTGCTACCTCAGAGACTTGCTTGAA  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CGGGCAGAAAATGGCGCCATGATCGACCCCACCCTTCTTCACTACAGCTTTGCCTTCTGTGCATCCCATGTCCA  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  TGGGAACAGTCAACAAATGCATGTGTACCTTAGTGGGCTGCCACCAAATACAGACCCTGAAGGGAGCAAAACTC  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  CCTCCCCACCTGAACCAGAAGCTAAAAAAGATACCAAAAAGGAATCCAAAAAAAGAAAAGATTCCAAAACCCAG  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  GCAAATCAAGAGCTGAAAAGGCCTGATGGAATTGGAACTGTGACTGTTGAAGAAAAGGAACGTTTTGAAGAAAT  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  CAAAGAGAGGCTCCGAGTTCTGCTAGAAAATCAGATTACACATTTTAGGTATTGCTTTCCATTTGGTCGACCTG  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  AAGGTGCTTTGAAAGCTACTCTCTCACTCTTGGAAAGGGTTTTGATGAAAGATATTGTTACCCCAGTGCCACAA  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  GAGGAGGTAAAAACAGTTATCCGTAAATGTCTGGAACAGGCTGCGTTAGTCAACTATTCTCGGCTCTCAGAGTA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TGCCAAAATCGAAGAAAATGTAGGCCGGTTAATCACTCCTGCCAAAAAGCTTGAAGATACAATACGTCTTGCTG  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  AACTAGTCATTGAAGTTCTTCAGCAAAATGAGGAGCACCACGCAGAGGCCTTTGCGTGGTGGTCAGATTTAATG  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  GTGGAGCATGCGGAGACGTTCCTGTCACTCTTTGCAGTAGACATGGATGCAGCCTTAGAGGTGCAACCTCCAGA  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  CACATGGGACAGTTTTCCACTATTTCAGCTGCTGAATGATTTTCTCCGTACTGACTATAATTTGTGCAATGGAA  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  AATTTCACAAACACCTGCAAGACCTGTTTGCCCCACTTGTTGTTAGATATGTGGATCTGATGGAGTCCTCAATT  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  GCACAATCCATTCACAGGGGCTTTGAGCGGGAGTCATGGGAACCAGTCAATAATGGGTCAGGCACCTCAGAAGA  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  TCTGTTTTGGAAACTTGACGCCCTTCAGACCTTCATTCGGGACCTGCACTGGCCTGAAGAAGAGTTTGGAAAGC  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  ACCTGGAACAACGGCTGAAGTTGATGGCAAGTGACATGATCGAATCTTGTGTCAAAAGAACCAGGATTGCATTT  3330

Query    1  ---------------------------------------------------------------ATGTTTAATGT  11
                                                                           |||||||||||
Sbjct 3331  GAAGTTAAGCTGCAAAAAACCAGTCGATCAACAGATTTTCGAGTCCCACAGTCAATATGCACCATGTTTAATGT  3404

Query   12  TATGGTTGATGCCAAAGCTCAATCAACAAAACTTTGCAGCATGGAAATGGGCCAAGAGTTTGCTAAAATGTGGC  85
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3405  TATGGTTGATGCCAAAGCTCAATCAACAAAACTTTGCAGCATGGAAATGGGCCAAGAGTTTGCTAAAATGTGGC  3478

Query   86  ATCAATACCATTCAAAAATAGACGAACTAATTGAAGAAACTGTTAAAGAAATGATAACACTCTTGGTTGCAAAG  159
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3479  ATCAATACCATTCAAAAATAGACGAACTAATTGAAGAAACTGTTAAAGAAATGATAACACTCTTGGTTGCAAAG  3552

Query  160  TTCGTTACTATCTTGGAAGGAGTGCTGGCAAAATTATCCAGATATGACGAAGGGACTTTGTTTTCTTCTTTTCT  233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3553  TTCGTTACTATCTTGGAAGGAGTGCTGGCAAAATTATCCAGATATGACGAAGGGACTTTGTTTTCTTCTTTTCT  3626

Query  234  GTCATTTACCGTGAAGGCAGCTTCCAAATATGTGGATGTACCTAAACCCGGGATGGACGTGGCCGACGCCTACG  307
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3627  GTCATTTACCGTGAAGGCAGCTTCCAAATATGTGGATGTACCTAAACCCGGGATGGACGTGGCCGACGCCTACG  3700

Query  308  TGACTTTCGTCCGCCATTCTCAGGATGTCCTGCGTGATAAGGTCAATGAGGAGATGTACATAGAAAGGTTATTT  381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3701  TGACTTTCGTCCGCCATTCTCAGGATGTCCTGCGTGATAAGGTCAATGAGGAGATGTACATAGAAAGGTTATTT  3774

Query  382  GATCAATGGTACAACAGCTCCATGAACGTGATCTGCACCTGGTTGACGGACCGGATGGACTTACAGCTTCATAT  455
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3775  GATCAATGGTACAACAGCTCCATGAACGTGATCTGCACCTGGTTGACGGACCGGATGGACTTACAGCTTCATAT  3848

Query  456  TTATCAGTTGAAAACACTAATTAGGATGGTAAAGAAAACCTACAGAGATTTCCGATTGCAAGGGGTCCTGGACT  529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3849  TTATCAGTTGAAAACACTAATTAGGATGGTAAAGAAAACCTACAGAGATTTCCGATTGCAAGGGGTCCTGGACT  3922

Query  530  CCACCTTAAACAGCAAGACCTATGAAACGATCCGGAACCGTCTCACTGTGGAGGAAGCCACAGCATCAGTGAGT  603
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3923  CCACCTTAAACAGCAAGACCTATGAAACGATCCGGAACCGTCTCACTGTGGAGGAAGCCACAGCATCAGTGAGT  3996

Query  604  GAAGGTGGGGGACTGCAGGGCATCAGCATGAAGGACAGCGATGAGGAAGACGAAGAAGACGAT  666
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3997  GAAGGTGGGGGACTGCAGGGCATCAGCATGAAGGACAGCGATGAGGAAGACGAAGAAGACGAT  4059

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.