Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11288
- Subject:
- NM_001081058.2
- Aligned Length:
- 4533
- Identities:
- 901
- Gaps:
- 3561
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGCCGAGTAGCTCGGACACGGCGCTGGGGGGAGGCGGGGGCCTGAGCTGGGCCGAGAAGAAGTTGGAGGAGCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCGCAAGCGGAGGCGATTCCTGTCCCCTCAGCAGCCGCCGCTGCTGTTGCCGCTCCTGCAGCCGCAGCTCCTGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AACCGCCGCCGCCCCCGCCGCCTCTGCTCTTCCTGGCTGCCCCCGGCGCGGCCGCCGCCGCAGCCGCCGCCGCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCGGCCTCCTCCTCTTGCTTCAGCCCGGGCCCTCCTCTGGAGGTCAAGCGGCTGGCGAGAGGCAAGAGGCGCCC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CGGAGGGCGGCAGAAGCGGCGCCGCGGGCCCCGCGCCGGGCAGGAGGCGGAGAAGCGCCGGGTCTTCTCGCTGC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CCCAGCCGCAGCAGGACGGCGGTGGCGGTGCCAGTAGCGGCGGGGGTGTGACCCCGCTGGTGGAGTACGAGGAT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GTGAGCTCCCAGTCCGAGCAGGGGCTGCTGCTGGGGGGCGCCAGCGCGGCAACGGCGGCGACGGCTGCCGGGGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AACGGGGGGCAACGGCGGGAGTCCGGCCTCCTCCTCCGGCACGCAGAGGCGCGCGGAGGGGTCGGAGCGCAGGC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CGCGCCGGGACCGCCGCAGCAGCAGCGGCCGCAGCAAGGAGCGCCACCGCGAGCACCGGCGGCGGGACGGGACG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CGCAGCGGCAGCGAGGCCTCAAAGGCCCGCAGCCGCCACGGACACAGCGGCGAGGAGCGGGCGGAGGCCGCCAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GAGCGGCAGCAGCAGCAGCAGCGGCGGCCGCCGCAAGAGCGCGTCGGCTACGTCCAGCAGCAGTAGCAGCCGCA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AGGACCGGGACCTCAAGGCCCACCGCAGCCGGACTAAGTCGTCCAAGGAACCGCCCTCGGCCTACAAGGAGCCG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCCAAGGCCTACCGGGAGGACAAGAGCGAGCCGAAGGCCTACAGGCGGCGGCAGCGGTCCCTGAGCCCGCTGGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGGCCGGGACGAAAGCCCGGTGTCCCACAGGGCCTCGCAGAGCCTTCGGAGCCGCAAGTCCCCCAGTCCGGCGG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GAGGTGGCAGCAGTCCTTATTCCCGGCGGCTGCCGCGCTCCCCGAGCCCCTATAGCCGGCGCCGCTCGCCCAGC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TACAGCCGCCACAGCTCCTACGAGCGGGGCGGCGACGTATCCCCCAGCCCGTACAGCAGCAGCAGCTGGCGGCG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CTCGCGCAGCCCCTACAGCCCAGTACTCAGACGATCTGCCAAATCCCGAAGCAGAAGCCCATATTCATCTAGGC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ACTCAAGATCTCGGAGCAGGCACAGATTGTCTAGATCAAGAAGTCGTCATTCAAGCATTTCTCCTAGCACACTA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 ACTCTGAAGAGTAGCTTGGCAGCTGAATTGAACAAGAATAAAAAGGCACGAGCTGCAGAGGCAGCAAGAGCTGC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AGAGGCAGCAAAAGCTGCAGAAGCTGCTAAGGCTGCTGAAGCAGCTGCCAAAGCTGCCAAAGCCTCAAATGCTT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CTACACCTACCAAGGGGAACACAGAAACTGGTGCCAGTGTCTCACAGACAAACCATGTGAAGGAAGTCAAAAAA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CTTAAAACTGAGCATGCACCTTCTCCTTCAAGTGGTGGGACCGTCAAAAGCGACAAAGCAAAAACAAAGCCACC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GCTTCAAGTAACAAAGGTAGACAATAATTTGACAGTAGAGAAAGCCACCAAGAAAACAGTTGTTGGGAAGGAGA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GTAAACCTGCTGCTACAAAGGAAGAACCAGTTTCCACTAAAGAGAAAAGCAAGCCACTCACACCAAGCACAGGA 1776
Query 1 ------------------------------------------------------------------ATGCTGCC 8
||||||||
Sbjct 1777 GCCAAGGAGAAGGAGCAGCATGTGGCTTTAGTGACCTCTACGTTACCGCCATTACCTTTGCCTCCCATGCTGCC 1850
Query 9 TGAAGATAAAGAAGCTGATAGCTTACGAGGAAATATTTCAGTAAAAGCAGTTAAAAAAGAAGTAGAAAAGAAAC 82
||||||||||||.||||||||||||.||||.||.|||||.||.|||||||||||||||||||||||||||||||
Sbjct 1851 TGAAGATAAAGATGCTGATAGCTTAAGAGGCAACATTTCTGTCAAAGCAGTTAAAAAAGAAGTAGAAAAGAAAC 1924
Query 83 TCCGATGTCTTCTTGCTGATTTACCGCTGCCCCCTGAGCTACCAGGAGGAGATGATCTTTCAAAGAGTCCAGAG 156
||||||||||.||||||||||||||..|||||||||||.||||||||||||||||||||||.||||||||||||
Sbjct 1925 TCCGATGTCTGCTTGCTGATTTACCATTGCCCCCTGAGTTACCAGGAGGAGATGATCTTTCCAAGAGTCCAGAG 1998
Query 157 GAAAAGAAAACAGCAACACAGTTACATAGTAAAAGGAGGCCTAAAATATGTGGGCCTCGCTATGGTGAAACCAA 230
||.||||||||||||.|||||||||||||.|||.|.||||||||||||||||||||||||||||||||||.|||
Sbjct 1999 GAGAAGAAAACAGCAGCACAGTTACATAGCAAACGAAGGCCTAAAATATGTGGGCCTCGCTATGGTGAAATCAA 2072
Query 231 AGAAAAAGATATTGACTGGGGAAAACGCTGCGTGGATAAATTTGATATCATCGGAATTATTGGAGAAGGTACTT 304
|||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 AGAAAAAGATATTGACTGGGGGAAACGCTGCGTGGATAAATTTGATATCATCGGAATTATTGGAGAAGGTACTT 2146
Query 305 ACGGACAAGTTTACAAAGCCAGGGATAAAGACACTGGAGAAATGGTAGCCTTAAAAAAAGTACGTCTGGATAAT 378
|.|||||||||||||||||||||||.||||||||.||||||||||||||||||||.||||||||||||||||||
Sbjct 2147 ATGGACAAGTTTACAAAGCCAGGGACAAAGACACGGGAGAAATGGTAGCCTTAAAGAAAGTACGTCTGGATAAT 2220
Query 379 GAAAAGGAAGGCTTTCCAATTACAGCAATTCGAGAAATTAAAATTCTCCGGCAGCTTACCCATCAGAGTATTAT 452
||||||||.||.||.|||||||||||||||.||||||||||||||||.|||||.||.|||||.||||||||.||
Sbjct 2221 GAAAAGGAGGGTTTCCCAATTACAGCAATTAGAGAAATTAAAATTCTTCGGCAACTCACCCACCAGAGTATCAT 2294
Query 453 CAATATGAAGGAAATAGTGACTGATAAAGAAGATGCTTTGGATTTCAAGAAGGACAAAGGTGCATTTTATCTGG 526
|||||||||||||||.|||||||||||||||||||||||||||||.|||||.|||||||||||||||||.||||
Sbjct 2295 CAATATGAAGGAAATCGTGACTGATAAAGAAGATGCTTTGGATTTTAAGAAAGACAAAGGTGCATTTTACCTGG 2368
Query 527 TGTTTGAATATATGGACCATGATCTGATGGGACTACTGGAATCAGGCTTGGTTCATTTTAATGAAAATCACATA 600
||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||.||.|||
Sbjct 2369 TGTTTGAATATATGGACCATGATCTGATGGGACTGCTGGAATCAGGCTTGGTTCATTTTAATGAAAACCATATA 2442
Query 601 AAGTCATTTATGAGACAGCTCATGGAGGGTCTGGATTATTGTCATAAGAAGAACTTTTTGCATAGAGATATTAA 674
||.||.||||||||||||||||||||.||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 AAATCTTTTATGAGACAGCTCATGGAAGGCCTGGATTATTGTCATAAGAAGAACTTTTTGCATAGAGATATTAA 2516
Query 675 ATGTTCCAATATCCTTCTAAATAATAGAGGGCAGATAAAACTTGCAGACTTTGGACTTGCTCGATTGTATAGCT 748
||||||.|||||||||||||||||||||||.|||||||||||||||||.||||||||||||||.||.|||||||
Sbjct 2517 ATGTTCAAATATCCTTCTAAATAATAGAGGACAGATAAAACTTGCAGATTTTGGACTTGCTCGTTTATATAGCT 2590
Query 749 CAGAAGAAAGTCGGCCGTATACTAACAAGGTAATTACTTTATGGTACCGTCCACCTGAACTGCTACTGGGAGAA 822
|||||||||||||.||.||||||||||||||.||||||||.|||||.||||||||||||.||||..||||||||
Sbjct 2591 CAGAAGAAAGTCGCCCATATACTAACAAGGTCATTACTTTGTGGTATCGTCCACCTGAATTGCTCTTGGGAGAA 2664
Query 823 GAACGATACACACCAGCCATTGATGTATGGAGCTGTGGCTGTATCCTTGGCGAACTCTTCACTAAAAAACCTAT 896
||||||||.|||||||||||||||||||||||||||||.|||||||||||.|||||||||||||||||||||||
Sbjct 2665 GAACGATATACACCAGCCATTGATGTATGGAGCTGTGGATGTATCCTTGGTGAACTCTTCACTAAAAAACCTAT 2738
Query 897 ATTTCAAGCAAATCAGGAACTTGCACAACTAGAATTAATAAG----ACATGAAGAA--------AATGAAGTTT 958
||||||||||||.||||||||||||||.|||||..||||||| |.|||..|.| ..||.|||.|
Sbjct 2739 ATTTCAAGCAAACCAGGAACTTGCACAGCTAGAGCTAATAAGCCGTATATGTGGGAGTCCATGTCCTGCAGTGT 2812
Query 959 ---CTGA--TAAACAAA----------TC--------------------------------------------- 972
|||| |||.|||| ||
Sbjct 2813 GGCCTGATGTAATCAAACTGCCATATTTCAACACCATGAAACCAAAGAAGCAATATCGGCGGAAGTTAAGAGAA 2886
Query 973 -------------------------------------------------------------------------- 972
Sbjct 2887 GAATTTGTTTTCATCCCCGCAGCTGCACTCGACTTATTCGATTACATGCTTGCCTTGGATCCCAGTAAGCGCTG 2960
Query 973 -------------------------------------------------------------------------- 972
Sbjct 2961 CACTGCTGAGCAGGCTCTTCAGTGTGAGTTCCTGCGAGACGTGGAACCCTCCAAAATGCCTCCACCAGACCTTC 3034
Query 973 -------------------------------------------------------------------------- 972
Sbjct 3035 CTTTGTGGCAAGATTGTCATGAATTATGGAGTAAAAAGAGAAGAAGACAGAAACAGATGGGCATGACTGATGAT 3108
Query 973 -------------------------------------------------------------------------- 972
Sbjct 3109 CTTTCCACAATCAAAGCCCCTAGGAAGGACCTGTCTCTGGGCTTAGATGACAGCAGAACTAACACACCCCAGGG 3182
Query 973 -------------------------------------------------------------------------- 972
Sbjct 3183 TGTGCTGCCACCCGCACAGTTGAAATCTCAGAGCAACTCAAATGTAGCACCTGTAATAACAGGCCCTGGACAGC 3256
Query 973 -------------------------------------------------------------------------- 972
Sbjct 3257 CGTTAAACCACAGTGAATTGGCAATTCTTCTAAACCTACTACAATCTAAATCAAGTGTTAATATGGCTGATTTT 3330
Query 973 -------------------------------------------------------------------------- 972
Sbjct 3331 GTCCAAGTGTTGAACATTAAGGTAAACTCTGAGACTCAACAGCAGCTAAATAAAATAAACCTTCCTGCTGGAAT 3404
Query 973 -------------------------------------------------------------------------- 972
Sbjct 3405 TTTGGCAACAGGTGAAAAACAGACAGATCCATCAACACCACAACAGGAGTCTTCAAAATCATTGGGAGGAGTTC 3478
Query 973 -------------------------------------------------------------------------- 972
Sbjct 3479 AGCCTTCACAGACCATCCAGCCTAAAGTGGAAACTGATGCTGCCCAGGCTGCTGTGCAGAGTGCATTTGCAGTC 3552
Query 973 -------------------------------------------------------------------------- 972
Sbjct 3553 CTCTTGACTCAGTTAATAAAGGCCCAACAGTCCAAACAGAAAGATGCCATGCTAGAGGAAAGGGAAAATGGATC 3626
Query 973 -------------------------------------------------------------------------- 972
Sbjct 3627 AGGACATGAAGCTCCATTGCAACTCAGGCCTCCTCTAGAACCGAGCACTCCTGGATCCGGGCAAGATGACCTCA 3700
Query 973 -------------------------------------------------------------------------- 972
Sbjct 3701 TCCAGCACCAAGACAGGAGGATATTGGAGCTGACACCAGAACCAGACCGGCCTCGAATTCTGCCTCCTGATCAA 3774
Query 973 -------------------------------------------------------------------------- 972
Sbjct 3775 CGGCCTCCTGAACCTCCTGAACCACCACCAGTTACTGAGGAGGACCTAGATTATCGGACAGAAAACCAGCATGT 3848
Query 973 -------------------------------------------------------------------------- 972
Sbjct 3849 TCCTACCACTAGTTCTTCATTAACTGACCCACATGCTGGAGTGAAGGCAGCCCTCTTACAGCTGCTTGCTCAGC 3922
Query 973 -------------------------------------------------------------------------- 972
Sbjct 3923 ATCAGCCCCAGGATGATCCCAAAAGAGAAGGTGGTATCGATTATCCCACAGGAGACACATATGTGCCCAGTTCA 3996
Query 973 -------------------------------------------------------------------------- 972
Sbjct 3997 GACTATAAGGACAACTTTGGATCTTCTTTCTCTGCCGCTCCTTACGTTAGCAGTGATGGTCTAGGAAGTAGCTC 4070
Query 973 -------------------------------------------------------------------------- 972
Sbjct 4071 CGCTGCTGCACCATTGGAAGCACGTAGTTTCATTGGAAACTCAGATATTCAGTCTCTGGATAACTACAGTACTG 4144
Query 973 -------------------------------------------------------------------------- 972
Sbjct 4145 CTTCATCTCACACTGGTGGTCCACCTCAAACTTCTGCCTTTACTGAGTCGTTTGCCAGTTCAGTAGCTGGATAT 4218
Query 973 -------------------------------------------------------------------------- 972
Sbjct 4219 GGAGACATTTACCTCAATGCTGGTCCCATGTTGTTTAGTGGAGACAAGGACCATAGATTTGAATATAGCCATGG 4292
Query 973 -------------------------------------------------------------------------- 972
Sbjct 4293 TCCTATCACAGTCCTCACAAACAGCAATGACCCTTCCACAGGGCCAGAGAGTACTCATCCCTTGCCAGCAAAGA 4366
Query 973 -------------------------------------------------------------------------- 972
Sbjct 4367 TGCACAACTATAACTATGGTGGTAACTTACAGGAAAATCCAGGTGGCCCTAGCCTCATGCATGGACAGACCTGG 4440
Query 973 -------------------------------------------------------------------------- 972
Sbjct 4441 ACTTCTCCTGCCCAAGGACCTGGATATTCACAAGGATACAGGGGACACATTAGCACATCAGCTGGCAGAGGTCG 4514
Query 973 ------------------- 972
Sbjct 4515 AGGCAGAGGGTTACCATAC 4533
