Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11288
- Subject:
- NM_003718.5
- Aligned Length:
- 4541
- Identities:
- 962
- Gaps:
- 3574
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGCCGAGCAGCTCGGACACGGCGCTGGGGGGAGGCGGGGGCCTGAGCTGGGCGGAGAAGAAGTTGGAGGAACG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCGCAAGCGGAGGCGATTCCTGTCCCCTCAGCAGCCGCCGCTGCTGTTGCCGCTCCTGCAGCCGCAGCTCCTGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AACCGCCGCCGCCCCCGCCGCCTCTGCTCTTCCTGGCTGCTCCCGGCACGGCCGCCGCCGCAGCCGCCGCCGCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCGGCCTCCTCCTCTTGCTTCAGCCCGGGCCCCCCTCTGGAGGTCAAGCGGCTGGCGAGAGGCAAGAGGCGCGC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGGAGGGCGGCAGAAGCGGCGTCGCGGGCCCCGCGCCGGGCAGGAGGCGGAGAAGCGTCGGGTCTTCTCGCTGC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CCCAGCCGCAGCAGGACGGCGGTGGCGGTGCTAGTAGCGGCGGGGGTGTGACCCCGCTGGTGGAATACGAGGAT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GTGAGCTCCCAGTCCGAGCAGGGGCTGCTGCTGGGGGGGGCCAGCGCGGCAACGGCGGCGACGGCTGCCGGGGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AACGGGGGGCAGCGGCGGGAGTCCGGCCTCCTCCTCCGGCACCCAGCGGCGCGGGGAGGGGTCGGAGCGCAGGC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCCGCCGGGACCGCCGCAGCAGCAGTGGCCGCAGCAAGGAGCGCCACCGCGAGCACCGGCGGCGGGATGGGCAG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CGCGGTGGCAGCGAGGCCTCCAAGTCCCGCAGCCGCCACAGCCACAGCGGCGAGGAACGGGCCGAGGTCGCCAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GAGCGGCAGCAGCAGCAGCAGCGGCGGCCGCCGGAAAAGCGCTTCGGCCACATCCAGCAGCAGTAGCAGCCGCA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AGGACCGGGACTCGAAGGCCCACCGCAGCCGGACTAAGTCGTCCAAGGAGCCGCCTTCGGCCTACAAGGAACCG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCCAAGGCCTACCGGGAGGACAAGACCGAGCCTAAGGCCTACAGGCGGCGGCGGTCCCTCAGCCCACTGGGAGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CCGGGACGACAGCCCGGTGTCCCACAGGGCCTCTCAGAGCCTGAGGAGCCGCAAGTCCCCCAGCCCGGCAGGAG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GTGGCAGCAGCCCCTATTCTCGGCGGCTGCCGCGCTCCCCGAGCCCCTACAGTCGCCGCCGCTCCCCCAGCTAC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGCCGCCACAGCTCCTACGAGCGGGGCGGCGACGTGTCCCCTAGTCCCTACAGCAGCAGCAGCTGGCGCCGCTC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TCGCAGTCCCTACAGCCCTGTGCTCAGACGGTCTGGAAAATCCCGAAGCAGAAGCCCGTATTCATCTAGGCATT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CAAGATCTCGTAGCAGGCACAGATTGTCTAGATCCAGAAGTCGTCATTCTAGTATTTCTCCTAGCACACTAACT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CTGAAGAGTAGCCTGGCAGCTGAATTGAACAAGAATAAAAAAGCACGAGCAGCAGAGGCAGCAAGAGCCGCAGA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AGCAGCGAAAGCTGCAGAAGCAACTAAGGCTGCTGAGGCTGCTGCCAAGGCTGCAAAAGCTTCAAACACTTCTA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CACCTACCAAGGGGAACACGGAAACTAGTGCCAGTGCATCACAAACAAACCATGTGAAGGATGTGAAGAAAATT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AAAATTGAACATGCACCTTCTCCCTCAAGTGGTGGAACTTTAAAAAATGACAAAGCAAAAACAAAGCCACCTCT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TCAGGTAACGAAGGTGGAAAATAATTTGATTGTAGATAAAGCCACCAAGAAAGCAGTCATAGTTGGAAAGGAGA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GTAAATCTGCTGCTACAAAGGAGGAATCAGTATCTCTTAAAGAGAAAACCAAACCACTTACACCAAGCATAGGA 1776
Query 1 ------------------------------------------------------------------ATGCTGCC 8
||||||||
Sbjct 1777 GCCAAGGAGAAGGAGCAACATGTAGCTTTAGTCACCTCTACATTACCACCGTTACCTTTGCCTCCCATGCTGCC 1850
Query 9 TGAAGATAAAGAAGCTGATAGCTTACGAGGAAATATTTCAGTAAAAGCAGTTAAAAAAGAAGTAGAAAAGAAAC 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 TGAAGATAAAGAAGCTGATAGCTTACGAGGAAATATTTCAGTAAAAGCAGTTAAAAAAGAAGTAGAAAAGAAAC 1924
Query 83 TCCGATGTCTTCTTGCTGATTTACCGCTGCCCCCTGAGCTACCAGGAGGAGATGATCTTTCAAAGAGTCCAGAG 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 TCCGATGTCTTCTTGCTGATTTACCGCTGCCCCCTGAGCTACCAGGAGGAGATGATCTTTCAAAGAGTCCAGAG 1998
Query 157 GAAAAGAAAACAGCAACACAGTTACATAGTAAAAGGAGGCCTAAAATATGTGGGCCTCGCTATGGTGAAACCAA 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 GAAAAGAAAACAGCAACACAGTTACATAGTAAAAGGAGGCCTAAAATATGTGGGCCTCGCTATGGTGAAACCAA 2072
Query 231 AGAAAAAGATATTGACTGGGGAAAACGCTGCGTGGATAAATTTGATATCATCGGAATTATTGGAGAAGGTACTT 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 AGAAAAAGATATTGACTGGGGAAAACGCTGCGTGGATAAATTTGATATCATCGGAATTATTGGAGAAGGTACTT 2146
Query 305 ACGGACAAGTTTACAAAGCCAGGGATAAAGACACTGGAGAAATGGTAGCCTTAAAAAAAGTACGTCTGGATAAT 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 ACGGACAAGTTTACAAAGCCAGGGATAAAGACACTGGAGAAATGGTAGCCTTAAAAAAAGTACGTCTGGATAAT 2220
Query 379 GAAAAGGAAGGCTTTCCAATTACAGCAATTCGAGAAATTAAAATTCTCCGGCAGCTTACCCATCAGAGTATTAT 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 GAAAAGGAAGGCTTTCCAATTACAGCAATTCGAGAAATTAAAATTCTCCGGCAGCTTACCCATCAGAGTATTAT 2294
Query 453 CAATATGAAGGAAATAGTGACTGATAAAGAAGATGCTTTGGATTTCAAGAAGGACAAAGGTGCATTTTATCTGG 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 CAATATGAAGGAAATAGTGACTGATAAAGAAGATGCTTTGGATTTCAAGAAGGACAAAGGTGCATTTTATCTGG 2368
Query 527 TGTTTGAATATATGGACCATGATCTGATGGGACTACTGGAATCAGGCTTGGTTCATTTTAATGAAAATCACATA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 TGTTTGAATATATGGACCATGATCTGATGGGACTACTGGAATCAGGCTTGGTTCATTTTAATGAAAATCACATA 2442
Query 601 AAGTCATTTATGAGACAGCTCATGGAGGGTCTGGATTATTGTCATAAGAAGAACTTTTTGCATAGAGATATTAA 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 AAGTCATTTATGAGACAGCTCATGGAGGGTCTGGATTATTGTCATAAGAAGAACTTTTTGCATAGAGATATTAA 2516
Query 675 ATGTTCCAATATCCTTCTAAATAATAGAGGGCAGATAAAACTTGCAGACTTTGGACTTGCTCGATTGTATAGCT 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 ATGTTCCAATATCCTTCTAAATAATAGAGGGCAGATAAAACTTGCAGACTTTGGACTTGCTCGATTGTATAGCT 2590
Query 749 CAGAAGAAAGTCGGCCGTATACTAACAAGGTAATTACTTTATGGTACCGTCCACCTGAACTGCTACTGGGAGAA 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 CAGAAGAAAGTCGGCCGTATACTAACAAGGTAATTACTTTATGGTACCGTCCACCTGAACTGCTACTGGGAGAA 2664
Query 823 GAACGATACACACCAGCCATTGATGTATGGAGCTGTGGCTGTATCCTTGGCGAACTCTTCACTAAAAAACCTAT 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665 GAACGATACACACCAGCCATTGATGTATGGAGCTGTGGCTGTATCCTTGGCGAACTCTTCACTAAAAAACCTAT 2738
Query 897 ATTTCAAGCAAATCAGGAACTTGCACAACTAGAATTAATAAGACATGAAGAAAA-----------------TGA 953
||||||||||||||||||||||||||||||||||||||||||.| |||.| ||.
Sbjct 2739 ATTTCAAGCAAATCAGGAACTTGCACAACTAGAATTAATAAGCC-----GAATATGTGGGAGTCCATGTCCTGC 2807
Query 954 AGTTT---CTGA--TAAACAAA----------TC---------------------------------------- 972
|||.| |||| |||.|||| ||
Sbjct 2808 AGTGTGGCCTGATGTAATCAAACTACCATATTTCAACACCATGAAACCAAAGAAGCAATATCGTCGAAAGTTAA 2881
Query 973 -------------------------------------------------------------------------- 972
Sbjct 2882 GAGAAGAATTTGTTTTTATTCCTGCAGCTGCGCTAGACTTATTTGATTACATGCTTGCCTTGGATCCTAGTAAG 2955
Query 973 -------------------------------------------------------------------------- 972
Sbjct 2956 CGCTGCACTGCTGAACAGGCTCTTCAGTGCGAGTTCCTCCGAGATGTGGAACCCTCAAAAATGCCTCCACCAGA 3029
Query 973 -------------------------------------------------------------------------- 972
Sbjct 3030 TCTCCCTTTATGGCAAGATTGTCATGAGTTATGGAGTAAAAAGCGAAGAAGACAGAAGCAGATGGGCATGACTG 3103
Query 973 -------------------------------------------------------------------------- 972
Sbjct 3104 ATGATGTTTCCACAATTAAAGCCCCCAGGAAGGACTTGTCTCTGGGCTTGGATGACAGCAGAACCAACACACCC 3177
Query 973 -------------------------------------------------------------------------- 972
Sbjct 3178 CAGGGTGTGCTGCCATCTTCACAGCTGAAATCTCAGGGCAGCTCAAATGTGGCACCTGTAAAAACAGGCCCTGG 3251
Query 973 -------------------------------------------------------------------------- 972
Sbjct 3252 ACAGCACTTAAACCACAGTGAATTGGCAATTCTACTAAACCTACTACAATCTAAAACAAGTGTTAATATGGCTG 3325
Query 973 -------------------------------------------------------------------------- 972
Sbjct 3326 ATTTTGTCCAAGTGTTGAACATTAAGGTAAACTCTGAGACTCAACAGCAGCTAAATAAAATAAACCTTCCTGCT 3399
Query 973 -------------------------------------------------------------------------- 972
Sbjct 3400 GGAATTTTGGCAACAGGTGAAAAACAGACAGATCCATCAACACCACAACAGGAGTCTTCGAAACCGTTGGGAGG 3473
Query 973 -------------------------------------------------------------------------- 972
Sbjct 3474 AATTCAGCCTTCTTCTCAGACCATCCAGCCTAAAGTGGAGACTGATGCTGCCCAGGCGGCTGTGCAGAGTGCAT 3547
Query 973 -------------------------------------------------------------------------- 972
Sbjct 3548 TTGCAGTTCTGTTGACTCAGTTAATAAAGGCTCAGCAGTCAAAGCAGAAAGATGTGCTACTAGAAGAGAGGGAA 3621
Query 973 -------------------------------------------------------------------------- 972
Sbjct 3622 AATGGATCGGGACATGAAGCGTCATTACAACTCAGGCCACCTCCAGAACCTAGCACTCCGGTGTCGGGACAAGA 3695
Query 973 -------------------------------------------------------------------------- 972
Sbjct 3696 TGACCTCATCCAGCATCAAGATATGAGGATCTTGGAGCTAACGCCAGAACCAGACCGGCCTCGAATTCTGCCTC 3769
Query 973 -------------------------------------------------------------------------- 972
Sbjct 3770 CTGACCAACGACCTCCCGAGCCTCCTGAACCACCACCAGTCACTGAGGAAGATCTAGATTATCGGACAGAAAAC 3843
Query 973 -------------------------------------------------------------------------- 972
Sbjct 3844 CAGCATGTACCCACCACCAGTTCTTCATTAACTGACCCTCATGCCGGAGTGAAGGCAGCCCTGTTACAGCTGCT 3917
Query 973 -------------------------------------------------------------------------- 972
Sbjct 3918 TGCTCAGCATCAGCCCCAGGATGACCCCAAAAGAGAAGGTGGGATTGATTATCAAGCAGGAGACACTTACGTGT 3991
Query 973 -------------------------------------------------------------------------- 972
Sbjct 3992 CCACTTCAGACTACAAGGACAACTTTGGATCCTCTTCTTTCTCTTCTGCTCCTTATGTTAGCAATGATGGTCTA 4065
Query 973 -------------------------------------------------------------------------- 972
Sbjct 4066 GGAAGCAGTTCTGCTCCACCACTAGAACGACGTAGTTTCATTGGAAATTCAGATATTCAGTCTTTGGATAACTA 4139
Query 973 -------------------------------------------------------------------------- 972
Sbjct 4140 CAGTACTGCTTCATCTCATTCTGGTGGTCCACCTCAGCCTTCTGCCTTTTCTGAGTCATTTCCCAGTTCAGTAG 4213
Query 973 -------------------------------------------------------------------------- 972
Sbjct 4214 CTGGATATGGAGACATTTACCTCAATGCTGGTCCCATGTTGTTTAGTGGAGACAAGGACCATAGATTTGAATAT 4287
Query 973 -------------------------------------------------------------------------- 972
Sbjct 4288 AGCCATGGTCCTATTGCAGTCCTGGCAAACAGCAGTGACCCTTCCACGGGGCCAGAGAGTACTCATCCTTTGCC 4361
Query 973 -------------------------------------------------------------------------- 972
Sbjct 4362 AGCAAAGATGCACAACTATAACTATGGTGGTAACTTACAGGAAAATCCGAGTGGCCCCAGCCTCATGCATGGAC 4435
Query 973 -------------------------------------------------------------------------- 972
Sbjct 4436 AGACCTGGACTTCTCCTGCCCAAGGACCTGGATATTCACAAGGATACAGGGGACATATTAGCACATCAACTGGC 4509
Query 973 --------------------------- 972
Sbjct 4510 AGAGGCAGAGGCAGAGGGTTACCATAC 4536
