Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11305
- Subject:
- XR_001740348.2
- Aligned Length:
- 2519
- Identities:
- 1152
- Gaps:
- 1367
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCCCGTGCCGAGTTTCCTGTTTAAGATGGCGTCCCCCGTAGCAGCGCAGGCCGGGAAGCTTCTGCGAGCCCTAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGCTGCGGCCCCGCTTCCTGGCGGCCGGGTCCCAGGCAGTTCAATTAACCTCCAGAAGATGGCTGAACCTGCAG 148
Query 1 ---------------------ATGTCTGACAACGGAGTGAGAGTTCAAAGATTCTTTGTAGCAGACACTGCAAA 53
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GAATACCAGAGCAAGAAACTGATGTCTGACAACGGAGTGAGAGTTCAAAGATTCTTTGTAGCAGACACTGCAAA 222
Query 54 TGAAGCTCTCGAGGCTGCTAAGAGACTAAATGCAAAAGAAATTGTTTTAAAAGCCCAGATCTTAGCTGGAGGAA 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TGAAGCTCTCGAGGCTGCTAAGAGACTAAATGCAAAAGAAATTGTTTTAAAAGCCCAGATCTTAGCTGGAGGAA 296
Query 128 GAGGAAAAGGTGTCTTCAATAGTGGTTTGAAAGGAGGTGTTCATTTAACAAAAGACCCTAATGTTGTGGGACAG 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GAGGAAAAGGTGTCTTCAATAGTGGTTTGAAAGGAGGTGTTCATTTAACAAAAGACCCTAATGTTGTGGGACAG 370
Query 202 CTGGCTAAACAGATGATTGGGTACAATCTAGCGACAAAACAAACTCCAAAAGAAGGTGTGAAAGTTAACAAGGT 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CTGGCTAAACAGATGATTGGGTACAATCTAGCGACAAAACAAACTCCAAAAGAAGGTGTGAAAGTTAACAAGGT 444
Query 276 GATGGTTGCTGAAGCCTTGGATATTTCCAGAGAAACCTACCTGGCAATTCTGATGGACCGGTCCTGCAATGGCC 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GATGGTTGCTGAAGCCTTGGATATTTCCAGAGAAACCTACCTGGCAATTCTGATGGACCGGTCCTGCAATGGCC 518
Query 350 CCGTGCTGGTGGGCAGCCCCCAGGGGGGCGTCGACATTGAAGAGGTGGCTGCTTCAAACCCGGAGCTCATTTTT 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CCGTGCTGGTGGGCAGCCCCCAGGGGGGCGTCGACATTGAAGAGGTGGCTGCTTCAAACCCGGAGCTCATTTTT 592
Query 424 AAGGAGCAAATTGACATTTTTGAAGGAATAAAGGACAGCCAAGCTCAGCGGATGGCCGAAAATCTAGGCTTCGT 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AAGGAGCAAATTGACATTTTTGAAGGAATAAAGGACAGCCAAGCTCAGCGGATGGCCGAAAATCTAGGCTTCGT 666
Query 498 TGGGCCTTTGAAAAGCCAGGCTGCAGATCAAATTACGAAGCTGTATAATCTCTTCCTGAAAATTGATGCTACTC 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TGGGCCTTTGAAAAGCCAGGCTGCAGATCAAATTACGAAGCTGTATAATCTCTTCCTGAAAATTGATGCTACTC 740
Query 572 AGGTGGAAGTGAATCCCTTTGGTGAAACTCCAGAAGGACAAGTTGTCTGTTTTGATGCCAAGATAAACTTTGAT 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AGGTGGAAGTGAATCCCTTTGGTGAAACTCCAGAAGGACAAGTTGTCTGTTTTGATGCCAAGATAAACTTTGAT 814
Query 646 GACAACGCAGAATTCCGACAAAAAGACATATTTGCTATGGACGACAAATCAGAGAATGAGCCCATTGAAAATGA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GACAACGCAGAATTCCGACAAAAAGACATATTTGCTATGGACGACAAATCAGAGAATGAGCCCATTGAAAATGA 888
Query 720 AGCTGCCAAATATGATCTAAAATACATAGGACTAGATGGGAACATTGCCTGCTTTGTGAATGGTGCTGGGCTCG 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AGCTGCCAAATATGATCTAAAATACATAGGACTAGATGGGAACATTGCCTGCTTTGTGAATGGTGCTGGGCTCG 962
Query 794 CCATGGCTACTTGTGATATCATTTTCCTTAATGGTGGGAAGCCAGCCAACTTCTTGGATCTTGGAGGTGGTGTA 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CCATGGCTACTTGTGATATCATTTTCCTTAATGGTGGGAAGCCAGCCAACTTCTTGGATCTTGGAGGTGGTGTA 1036
Query 868 AAGGAAGCTCAAGTATATCAAGCATTCAAATTGCTCACAGCTGATCCTAAG----------------------- 918
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AAGGAAGCTCAAGTATATCAAGCATTCAAATTGCTCACAGCTGATCCTAAGCAGCAAAATTTGAAAGCAAGAAA 1110
Query 919 -------------------------------------------------------------------------- 918
Sbjct 1111 TACTTGGGCACCAGAATACAGGACTCAGAAGCACGTTCTTGAAGCTTGGAAATAGGACCAATATGGAGCTGGAA 1184
Query 919 -------------------------------------------------------------------------G 919
|
Sbjct 1185 CTCCTGACTCATCTTGGGAGTCTCTGATTATAGAGAGACTGCCAGAGGGAGTGGAACGAACATGGACTTTACAG 1258
Query 920 TTGAAGCCATCCTTGTCAATATATTTGGTGGTATCGTCAACTGTGCCATCATTGCCAATGGGATCACCAAAGCC 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTGAAGCCATCCTTGTCAATATATTTGGTGGTATCGTCAACTGTGCCATCATTGCCAATGGGATCACCAAAGCC 1332
Query 994 TGCCGGGAGCTAGAACTCAAGGTGCCCCTGGTGGTCCGGCTTGAAGGAACCAACGTCCAAGAGGCCCAGAAGAT 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TGCCGGGAGCTAGAACTCAAGGTGCCCCTGGTGGTCCGGCTTGAAGGAACCAACGTCCAAGAGGCCCAGAAGAT 1406
Query 1068 ACTCAACAACAGCGGACTCCCCATTACTTCAGCCATTGACCTGGAGGATGCAGCCAAGAAGGCTGTGGCCAGTG 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 ACTCAACAACAGCGGACTCCCCATTACTTCAGCCATTGACCTGGAGGATGCAGCCAAGAAGGCTGTGGCCAGTG 1480
Query 1142 TGGCCAAGAAG--------------------------------------------------------------- 1152
|||||||||||
Sbjct 1481 TGGCCAAGAAGTGATGTCTTTGTCCTGATCCAATGGAGAAAGAAAGCCATTTTTCCGTAAAAAGGGATGGTTCA 1554
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 1555 TCATTGTGAAAGAAATGGTTATCTCATTGGGGAAGAAAAGGGGAGGGGGAAGGCAAGAATCACTGAAAAATCTT 1628
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 1629 AAATCTGTGTTTTCTGGAATAAGATATCTAGACAGCCTAAATCTGATTTTGGTCTTTATAAAAATAATATCTTG 1702
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 1703 TGTTCTCATACTTTTCTGTCACTGTAAGCCTGCCCAGTAGGCAGTGTTTTGCAGACTTTGGGGAGTGGTCTATG 1776
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 1777 TGGCCAAATATTGTGTGTATAGACAGAATTTGAAATCAAGTCCTGCTTCATTTACAAGAATTTTGGTGGGCATC 1850
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 1851 TAATCCTACATAATGAAAAAGAAAAACAGACCATTTAAAAACTCAGACAAGATTATATTTAATATATTAATTAC 1924
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 1925 TAAAAAGGCATAAGATTACACTGAACATATTAGCTACTAAAAAGGCACTGCTAAGACATTCAAGCAAATAGCTA 1998
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 1999 TTACACACTACTGCAGATTTTACAGGTTTCTAATTCTAACATATGTTTGAAAAATCCGTGAGTATTCCAAAATA 2072
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2073 TATTTAATAATGGAATATCTGCATTAATATACCATCCATGTGTTTTTACCATTTGCCTTAATATTGAATATACT 2146
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2147 GTTTACCTCACACTAAAAAGAAAACCAGAAGCCTTATTTGTGATTTTGGGAGTGGAAGCTTCCATTTTTGTGTC 2220
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2221 AAAAATGAATCCTGATTCTTATGGAAATCTCTGTTATTAAGATATTTCAAGATGAGACAACACTGAAGATCAAA 2294
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2295 TTGTGTTTAGTATCACTATCTTCTCTCCTCGTTTCTCTCTTACTCCTCATCCTCCCAGAATCTACCAGTTTATG 2368
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2369 GTAGAAAGATGGGAACCTTATTTGAATGTGTTTTTTTTTTCCATGATGTCCAATTTTGTTGTGGGAAAGGATTT 2442
Query 1153 -------------------------------------------------------------------------- 1152
Sbjct 2443 GGATAAAATTTTTGTTTAAATTTTGGTAGATTTTTATCTATACAAATTTAAATAAAATTATGTTTTGTAAGCTG 2516
Query 1153 --- 1152
Sbjct 2517 TAA 2519
